HIDE SNP NAMES

The Big Tree: R-Z38845

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF41/S524 > Z43690 > S775 > L746 > Z38845

Z38845 is a G to A mutation at position hg19:7483249. This mutation is on the short arm of the Y chromosome in the IR1 region. There are 3 similar regions on the long arm of the Y chromosome and as such it does not show up cleanly in NGS tests if it shows up at all. NGS BAM files will usually show a mixture of G and A reads at this position. Paired end reads can pick up a difference between the regions and suggest that the mutation really is at hg19:7483249.
Z38845
Z17581 Y4954
BY11978
Y15896
BY11979
BY11980
BY11981
BY11982
7311574-GGATGGATGGACAGGCC-G
7311592-TAGAACCCAATGAC-T
BY11983
BY11984
Y14197
Y14198
BY11977
BY24222
Z17582
A8328
BY11985
BY11986
A8321
18589570-G-T
Y56398
A8343
A8341
ZZ52
BY101802
BY11987
BY11988
BY93240
Y74140
Stewart
337156
Stewart
N2338
Stewart
430337
Stewart
439070
Stewart
589108
Pearce
35963 YF01793
Stewart
52840
Stewart
358623
Stewart
B520703
Stuart
632426
Stuart
839265
Stuart
147822
Stewart
330477
Stewart
367892
Stewart
337093 YF03214
Stewart
430452
Stewart
283694
Stewart
431184
Webb
75703
Clancey
5987
Stewart
724157
Stewart
320811 YF03673
Stuart
315872
Stewart
801681
Stewart
751502
Stewart
305358
unknown
414818
Stewart
275682
Stewart
164047
Stewart
855102
Stewart
221200
Stewart
367895
Stewart
317006
Stewart
321497
Stuart
368733
Cole
704952
Stewart
IN54330
Mitchell
52758
Stewart
B1502
Stewart
251006 251006
Campbell
IN11448

Overlay STR Data for an STR:


Porter
N28007
Oakes
H2290
A red background is used for men whose data has not yet been fully analyzed. His position on the tree is not yet final, and will in general be downstream of the current position. He may not be positive for all the SNPs/INDELs in the block he descends from.

Men whose NGS data have been fully analyzed are indicated with a grey background color.

CTS4296
22233413-G-A
Mutations written with a red background fall within a region of the Y chromosome, such as the palindromic region, which has left the position of the mutation ambiguous. The true mutation may be at the indicated position, or at any one of a number of alternate positions.