Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > BY907 > BY1206 > BY27644 > BY1277 > BY221376

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
27570631-A-G 25424484-A-G P1_Y2 A+
56836282-C-T A*
13139364-C-G 10628850-C-G A*
10628856-C-T A*
22310993-G-T 20149107-G-T DYZ19 A*
22289431-G-C 20127545-G-C DYZ19 A*
24257450-C-T 22111303-C-T P3_b1 A*
25962126-A-G 23815979-A-G P1_Y1 A*
26320218-C-T 24174071-C-T P1_Y1 A*
26391806-T-C 24245659-T-C P1_Y1 A*
13451375-G-A 11295699-G-A A*
13450061-C-T 11294385-C-T A*
56834488-C-T A*
18300311-G-A 16188431-G-A P6_Prx A*
6266622-A-G 6398581-A-G IR3_Dst A*
28809697-G-T 26663550-G-T A*
20967284-T-A 18805398-T-A P4_Dst A*
19744596-C-G 17632716-C-G P5_Prx A*
56830620-C-G A*
13451389-A-C 11295713-A-C A*
13139366-A-G 10628852-A-G A*
20676894-A-T 18515008-A-T P4_Prx A*
13139355-C-T 10628841-C-T A*
13139356-A-G 10628842-A-G A*
7398317-T-C 7530276-T-C YY+
7558443-C-A 7690402-C-A FT49693 YY+
22727382-C-T 20565496-C-T FT51466 YY+
9903109-A-G 10065500-A-G FT50002 Y+
17666697-T-C 15554817-T-C FT50822 YY+
8998596-T-C 9160987-T-C FT49919 Y+
3087941-T-C 3219900-T-C FT48692 +
18581940-TGATA-T 16470060-TGATA-T +
18417001-T-G 16305121-T-G FT50950 P6_Gap +
6003437-C-T 6135396-C-T FT49439 +
22229189-T-G 20067303-T-G DYZ19 +
17961761-G-T 15849881-G-T FT50875 YY+
8199061-G-C 8331020-G-C FT49785 YY+
6991603-C-T 7123562-C-T FT49592 YY+
3866739-C-T 3998698-C-T FT48894 +
3801112-C-T 3933071-C-T FT48872 +
10922258-C-G FT56517 +
21964580-C-T 19802694-C-T FT51365 Y+
16628129-C-T 14516249-C-T FT50599 YY+
14338349-C-G 12217644-C-G FT50168 YY+
14326073-A-G 12205367-A-G Y9746 Z9100 YY+
14233286-T-C 12112580-T-C FT50139 YY+
28630493-A-G 26484346-A-G FT51733 +
13955138-G-A 11834432-G-A FT50069 Y+
14556130-A-G 12444331-A-G FT50223 YY+
14790680-CACA-C 12678751-CACA-C +
11664111-G-C FT56518 +
23974107-A-G 21827960-A-G FT51663 Y+
28784994-G-A 26638847-G-A BY55564 +
23301593-T-C 21139707-T-C FT51566 YY+
23135751-C-A 20973865-C-A FT51535 YY+
16715032-G-A 14603152-G-A FT50623 YY+
17461639-G-A 15349759-G-A YY+
5419991-C-T 5551950-C-T FT28404 +
14766577-G-A 12654646-G-A FT50259 YY+
13647946-G-A 11492270-G-A ZS6741 +
17654452-C-A 15542572-C-A FT50819 YY+
28643756-G-A 26497609-G-A FT31871 +
13470596-G-A 11314920-G-A *
22304234-A-T 20142348-A-T DYZ19 *
8465934-T-TTGTG 8597893-T-TTGTG 20×TG*
23146630-A-AT 20984744-A-AT 10×T*
16898888-A-ATTAT 14787008-A-ATTAT 6×TTAT*
15184731-T-A 13072817-T-A **
13469944-C-A 11314268-C-A **
18056830-T-C 15944950-T-C **
5964331-T-C 6096290-T-C **
6101940-A-C 6233899-A-C **
13288103-A-G 11132427-A-G **
19426078-C-T 17314198-C-T **
56886771-A-G **
19700241-C-A 17588361-C-A P5_Prx 19×A**
13474703-C-A 11319027-C-A **
59010417-A-G 56864270-A-G **
18195154-ATTT-A 16083274-ATTT-A 29×T**
28680947-T-A 26534800-T-A **
28644666-G-T 26498519-G-T **
21261826-TAAAA-T 19099940-TAAAA-T 26×A**
21122971-C-CA 18961085-C-CA 10×A**
17201762-C-CTT 15089882-C-CTT 16×T**
26024549-T-C 23878402-T-C P1_Y1 **
22871061-G-C 20709175-G-C **
13474687-G-C 11319011-G-C **
13474689-A-G 11319013-A-G **
13474677-C-T 11319001-C-T **
4269795-TG-T 4401754-TG-T **
7338827-C-T 7470786-C-T **
4839144-T-C 4971103-T-C **
20137869-C-T 18025989-C-T P5_Dst **
3130901-T-C 3262860-T-C **
15798159-T-C 13686279-T-C **
21574918-T-C 19413032-T-C **
16209109-C-T 14097229-C-T **
7338825-T-A 7470784-T-A **
7338823-A-G 7470782-A-G **
23011004-G-A 20849118-G-A ***
17245213-C-T 15133333-C-T ***
22988401-G-A 20826515-G-A ***
22920605-CTTTTTTTT-C 20758719-CTTTTTTTT-C 25×T***
21147418-T-TAA 18985532-T-TAA 16×A***
28500806-CTTTT-C,CTTTTTT 26354659-CTTTT-C,CTTTTTT 18×T***
19275101-A-G 17163221-A-G ***
21056025-A-G 18894139-A-G ***
21055149-T-C 18893263-T-C ***
16561393-A-C 14449513-A-C ***
56862635-T-G,TT ***
24893418-C-G 22747271-C-G g1 ***
28390820-GA-G 26244673-GA-G P1_gr2 10×A***
15297456-T-A 13185555-T-A ***
15364059-CAAAAA-C 13252179-CAAAAA-C 21×A***
21487760-CT-C 19325874-CT-C 10×T***
5059457-T-TA 5191416-T-TA 9×A***
5442529-T-TA 5574488-T-TA 10×A***
17475295-C-T 15363415-C-T ***
13469420-G-A 11313744-G-A ***
22722112-G-GA 20560226-G-GA 10×A***
13467894-G-C 11312218-G-C ***
21732663-CTT-C,CT 19570777-CTT-C,CT 14×T***
2741101-CTTT-C 2873060-CTTT-C 19×T***
9771054-ATT-A,AT 9933445-ATT-A,AT 16×T***
11031569-A-ACCATT ***
5514701-TA-T 5646660-TA-T 10×A***
13889851-AT-A 11769145-AT-A 11×T***
22881076-CTTT-C 20719190-CTTT-C 14×T***
13223554-G-A 11067878-G-A ***
10673225-T-C ***
5487197-A-AT 5619156-A-AT 10×T***
13474672-T-A 11318996-T-A ***
5626506-CT-C 5758465-CT-C 10×T***
14497364-CT-C 12385569-CT-C 10×T***
4456726-A-G 4588685-A-G ***
4341009-CT-C 4472968-CT-C ***
14178830-A-T 12058124-A-T ***
3465599-T-TA 3597558-T-TA 11×A***
14621030-T-C 12509228-T-C ***
5963882-A-T 6095841-A-T ***
13875614-C-A 11754908-C-A 10×T***
13549878-TTGTGTG-T,TTG 11394202-TTGTGTG-T,TTG 14×TG***
13527991-G-A 11372315-G-A ***
13527990-T-C 11372314-T-C ***
13485365-G-C 11329689-G-C ***
9666639-T-C 9829030-T-C IR3_Prx ***
8977735-A-G 9140126-A-G ***
7443911-T-C 7575870-T-C ***
13476662-A-G,T 11320986-A-G,T ***
6024638-G-A 6156597-G-A ***
5815594-CAAAAA-C 5947553-CAAAAA-C 22×A***
6438379-GT-G 6570338-GT-G 10×T***
5795860-CTTTT-C 5927819-CTTTT-C 18×T***
5366187-T-C 5498146-T-C ***
4848521-T-C 4980480-T-C ***
4794855-CTTTTTT-C 4926814-CTTTTTT-C 21×T***
4640099-GT-G 4772058-GT-G 11×T***
4164347-A-G 4296306-A-G ***
3514522-CTT-C,CTTTT 3646481-CTT-C,CTTTT 16×T***
3392031-T-C 3523990-T-C ***
3035254-G-A 3167213-G-A ***
21123539-TAA-T 18961653-TAA-T 13×A***
5400870-CT-C,CTT 5532829-CT-C,CTT 21×T***
6024643-TGC-T 6156602-TGC-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: IN409681474768892590818240898
Used in age calculations1474768892590818240898
Counts of SNPs2120
Variant counts last updated 2020-01-14 02:52:15.

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