Ferrara

BigY3: 881635
MDKA Birth: Italy

Tree Position

R-P312/S116 > Z46521 > Z46516 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > A21822 > S8183 > BY150781

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
881635
hg19:Y:3885728-A-G hg38:Y:4017687-A-G A+
hg19:Y:13449868-A-G hg38:Y:11294192-A-G A*
hg19:Y:28816606-A-T hg38:Y:26670459-A-T A*
hg19:Y:4397193-A-C hg38:Y:4529152-A-C A*
hg19:Y:13448085-C-T hg38:Y:11292409-C-T A*
hg19:Y:6112097-G-A hg38:Y:6244056-G-A A*
hg19:Y:6221130-A-G hg38:Y:6353089-A-G IR3_Dst A*
hg19:Y:6244587-C-A hg38:Y:6376546-C-A IR3_Dst A*
hg19:Y:13451532-T-C hg38:Y:11295856-T-C A*
hg19:Y:19768080-T-C hg38:Y:17656200-T-C P5_Prx A*
hg19:Y:19803431-G-GT hg38:Y:17691551-G-GT P5_Prx 8×TA*
hg19:Y:20708588-G-T hg38:Y:18546702-G-T P4_Prx A*
hg19:Y:25976701-C-G hg38:Y:23830554-C-G P1_Y1 A*
hg19:Y:26351372-G-C hg38:Y:24205225-G-C P1_Y1 A*
hg38:Y:56830864-C-G A*
hg38:Y:56833797-C-G A*
hg19:Y:4751112-C-A hg38:Y:4883071-C-A FT57060 +
hg19:Y:18546990-C-T hg38:Y:16435110-C-T FT58329 Y+
hg19:Y:3592765-G-T hg38:Y:3724724-G-T FT56848 +
hg19:Y:17394171-C-T hg38:Y:15282291-C-T YY+
hg19:Y:2938436-C-T hg38:Y:3070395-C-T FT56744 +
hg19:Y:3019764-T-C hg38:Y:3151723-T-C FT56762 +
hg19:Y:4653185-C-T hg38:Y:4785144-C-T FT57042 +
hg19:Y:4661773-C-T hg38:Y:4793732-C-T FT57045 +
hg19:Y:5393491-G-C hg38:Y:5525450-G-C FT57169 +
hg19:Y:5540698-T-G hg38:Y:5672657-T-G FT57194 +
hg19:Y:5554974-T-A hg38:Y:5686933-T-A FT57197 +
hg19:Y:5708876-A-C hg38:Y:5840835-A-C FT57226 +
hg19:Y:6502664-T-G hg38:Y:6634623-T-G FT57325 +
hg19:Y:6801743-G-T hg38:Y:6933702-G-T FT57366 YY+
hg19:Y:6833214-G-A hg38:Y:6965173-G-A FT57368 YY+
hg19:Y:6846379-C-A hg38:Y:6978338-C-A FT57371 YY+
hg19:Y:7133357-AG-A hg38:Y:7265316-AG-A +
hg19:Y:7323808-G-A hg38:Y:7455767-G-A FT57441 YY+
hg19:Y:7595925-T-A hg38:Y:7727884-T-A FT57465 YY+
hg19:Y:7622580-T-C hg38:Y:7754539-T-C FT57469 YY+
hg19:Y:7633463-T-C hg38:Y:7765422-T-C BY66400 YY+
hg19:Y:8441312-T-C hg38:Y:8573271-T-C FT57587 YY+
hg19:Y:9133126-A-G hg38:Y:9295517-A-G FT57667 Y+
hg19:Y:9883968-C-T hg38:Y:10046359-C-T BY30800 YY+
hg38:Y:10811992-G-A FT432270 +
hg38:Y:10859515-C-T FT219841 +
hg38:Y:10991837-TC-T +
hg19:Y:13199911-C-T hg38:Y:11044235-C-T FT219840 +
hg19:Y:13206022-T-C hg38:Y:11050346-T-C FT219839 +
hg19:Y:13865697-A-C hg38:Y:11744991-A-C FT57740 DYZ17 +
hg19:Y:14150061-T-C hg38:Y:12029355-T-C FT57794 YY+
hg19:Y:15934424-C-T hg38:Y:13822544-C-T FT58020 YY+
hg19:Y:17110963-T-C hg38:Y:14999083-T-C FT58155 YY+
hg19:Y:17462844-GA-G hg38:Y:15350964-GA-G +
hg19:Y:17722759-C-T hg38:Y:15610879-C-T FT58252 Y+
hg19:Y:19183038-A-C hg38:Y:17071158-A-C FT58427 Y+
hg19:Y:19450263-G-A hg38:Y:17338383-G-A FT58462 YY+
hg19:Y:21510936-G-A hg38:Y:19349050-G-A FT58547 YY+
hg19:Y:21650806-G-A hg38:Y:19488920-G-A FT58571 YY+
hg19:Y:22656497-A-G hg38:Y:20494611-A-G FT58666 YY+
hg19:Y:22713708-C-T hg38:Y:20551822-C-T FT58668 Y+
hg19:Y:23444489-C-T hg38:Y:21282603-C-T FT58777 YY+
hg19:Y:23494964-C-T hg38:Y:21333078-C-T FT58783 YY+
hg19:Y:24397905-T-C hg38:Y:22251758-T-C FT58825 Y+
hg19:Y:28730520-A-T hg38:Y:26584373-A-T FT58883 +
hg38:Y:10901614-C-CTCCAT *
hg38:Y:11027035-A-AC *
hg19:Y:21822848-A-AAATTGTAG hg38:Y:19660962-A-AAATTGTAG *
hg19:Y:22230016-A-T hg38:Y:20068130-A-T DYZ19 *
hg19:Y:22299669-C-G hg38:Y:20137783-C-G DYZ19 *
hg19:Y:28797657-T-A hg38:Y:26651510-T-A *
hg19:Y:6592615-TATAATA-T hg38:Y:6724574-TATAATA-T 13×ATA**
hg19:Y:18060384-G-A hg38:Y:15948504-G-A FT181317 **
hg19:Y:13530807-G-A hg38:Y:11375131-G-A **
hg19:Y:13465913-G-C hg38:Y:11310237-G-C **
hg19:Y:13458075-GCATTCCATTCCATTCCATTC-G hg38:Y:11302399-GCATTCCATTCCATTCCATTC-G 9×CATTC**
hg19:Y:4378789-T-G hg38:Y:4510748-T-G **
hg19:Y:23099839-C-T hg38:Y:20937953-C-T **
hg19:Y:13457706-C-A hg38:Y:11302030-C-A **
hg19:Y:13457686-C-CTTTAT hg38:Y:11302010-C-CTTTAT **
hg19:Y:13457709-T-G hg38:Y:11302033-T-G **
hg19:Y:5691453-AAAAT-A hg38:Y:5823412-AAAAT-A 6×AAAT**
hg19:Y:4503419-A-C hg38:Y:4635378-A-C **
hg19:Y:5178062-CAAAAAAAA-C hg38:Y:5310021-CAAAAAAAA-C 20×A**
hg19:Y:5753401-T-C hg38:Y:5885360-T-C **
hg19:Y:6375595-C-G hg38:Y:6507554-C-G **
hg19:Y:8278608-T-C hg38:Y:8410567-T-C **
hg19:Y:10069252-T-C hg38:Y:10231643-T-C **
hg19:Y:13481222-G-A hg38:Y:11325546-G-A **
hg19:Y:13524910-G-A hg38:Y:11369234-G-A **
hg19:Y:13568372-T-C hg38:Y:11412696-T-C FT445468 **
hg19:Y:13606416-AT-A hg38:Y:11450740-AT-A **
hg19:Y:14297038-CTATATATA-C hg38:Y:12176332-CTATATATA-C 10×TA**
hg19:Y:14685130-A-G hg38:Y:12573196-A-G **
hg19:Y:15133980-C-T hg38:Y:13022067-C-T **
hg19:Y:16208795-T-C hg38:Y:14096915-T-C **
hg19:Y:17903517-G-T hg38:Y:15791637-G-T FT181262 **
hg19:Y:19753967-T-C hg38:Y:17642087-T-C P5_Prx **
hg19:Y:22238749-G-A hg38:Y:20076863-G-A DYZ19 **
hg19:Y:23452160-G-A hg38:Y:21290274-G-A **
hg19:Y:26078795-G-A hg38:Y:23932648-G-A P1_Y1 **
hg19:Y:27852182-G-A hg38:Y:25706035-G-A P1_Y2 **
hg19:Y:28766236-G-A hg38:Y:26620089-G-A **
hg19:Y:9400643-ATT-A hg38:Y:9563034-ATT-A 13×T***
hg19:Y:13446462-C-A hg38:Y:11290786-C-A A17303 ***
hg19:Y:17678621-CTTTTTT-C hg38:Y:15566741-CTTTTTT-C 26×T***
hg19:Y:19391116-TG-T hg38:Y:17279236-TG-T ***
hg19:Y:8477577-A-AT hg38:Y:8609536-A-AT 10×T***
hg19:Y:3271445-CT-C hg38:Y:3403404-CT-C 10×T***
hg19:Y:26415676-CAAA-C hg38:Y:24269529-CAAA-C P1_Y1 20×A***
hg19:Y:23207965-CT-C hg38:Y:21046079-CT-C 10×T***
hg19:Y:23435682-CTT-C,CT hg38:Y:21273796-CTT-C,CT 21×T***
hg19:Y:7160586-C-CTT hg38:Y:7292545-C-CTT 15×T***
hg19:Y:23488834-TA-T hg38:Y:21326948-TA-T 30×A***
hg19:Y:6780870-CAAAA-C hg38:Y:6912829-CAAAA-C 26×A***
hg19:Y:21919404-CTTTTT-C hg38:Y:19757518-CTTTTT-C 16×T***
hg19:Y:13458095-C-G hg38:Y:11302419-C-G ***
hg38:Y:12376050-C-CTT ***
hg19:Y:4221231-T-TAA hg38:Y:4353190-T-TAA 19×A***
hg19:Y:23364087-CAA-C,CA hg38:Y:21202201-CAA-C,CA 16×A***
hg19:Y:2677983-A-G hg38:Y:2809942-A-G ***
hg19:Y:2856782-CTTTTTTT-C,CTTTTT hg38:Y:2988741-CTTTTTTT-C,CTTTTT 24×T***
hg19:Y:3012827-A-G hg38:Y:3144786-A-G ***
hg19:Y:3250696-CT-C,CTT hg38:Y:3382655-CT-C,CTT 14×T***
hg19:Y:5691465-T-A hg38:Y:5823424-T-A ***
hg19:Y:6046195-T-C hg38:Y:6178154-T-C ***
hg19:Y:8901991-CTTT-C,CTTTT hg38:Y:9033950-CTTT-C,CTTTT 19×T***
hg19:Y:13931739-CTT-C,CTTT hg38:Y:11811033-CTT-C,CTTT 22×T***
hg19:Y:15557048-AAAAG-A hg38:Y:13445168-AAAAG-A ***
hg19:Y:21435190-C-CT,CTT hg38:Y:19273304-C-CT,CTT 15×T***
hg19:Y:23087121-A-T hg38:Y:20925235-A-T ***
hg19:Y:23425016-T-C hg38:Y:21263130-T-C ***
hg38:Y:21780443-A-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 8816351489049093331428278647
Used in age calculations1489049093331428278647
Counts of SNPs2321
Variant counts last updated 2025-01-26 03:43:06.


Big Tree Main Page