Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > BY217348

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
876287
20437787-G-T 18275901-G-T P5_Dst A*
20516001-T-C 18354115-T-C P5_Dst A*
18457958-C-A 16346078-C-A P6_Dst A*
18450228-G-T 16338348-G-T P6_Dst A*
18438618-C-G 16326738-C-G P6_Dst A*
18340997-A-T 16229117-A-T P6_Prx A*
18340996-A-T 16229116-A-T P6_Prx A*
18275289-A-T 16163409-A-T P6_Prx A*
18011727-G-A 15899847-G-A P7_Dst YA*
18009628-T-C 15897748-T-C P7_Dst YA*
17991830-C-T 15879950-C-T P7_Prx YA*
20460816-A-G 18298930-A-G P5_Dst A*
20466311-G-T 18304425-G-T P5_Dst A*
20478542-C-T 18316656-C-T P5_Dst A*
20485377-T-C 18323491-T-C P5_Dst A*
20498311-C-G 18336425-C-G P5_Dst A*
16161550-C-T 14049670-C-T P8_Dst A*
18469094-T-A 16357214-T-A P6_Dst A*
16156519-C-A 14044639-C-A P8_Dst A*
16155530-G-A 14043650-G-A P8_Dst A*
16152250-A-G 14040370-A-G P8_Dst A*
16143385-G-A 14031505-G-A P8_Dst A*
16123105-C-T 14011225-C-T P8_Prx A*
20524615-T-C 18362729-T-C P5_Dst A*
20528486-C-T 18366600-C-T P5_Dst A*
20532684-G-A 18370798-G-A P5_Dst A*
13470645-G-A 11314969-G-A A*
20536741-G-T 18374855-G-T P5_Dst A*
20451114-G-T 18289228-G-T P5_Dst A*
20562480-A-T 18400594-A-T P5_Dst A*
20564762-A-G 18402876-A-G P5_Dst A*
20584517-G-T 18422631-G-T P5_Dst A*
18460043-A-T 16348163-A-T P6_Dst A*
18508018-A-T 16396138-A-T P6_Dst A*
20591814-C-A 18429928-C-A P5_Dst A*
20325614-G-T 18163728-G-T P5_Dst A*
20432258-T-C 18270372-T-C P5_Dst A*
20424542-C-T 18262656-C-T P5_Dst A*
20411628-G-T 18249742-G-T P5_Dst A*
20406655-A-G 18244769-A-G P5_Dst A*
20393895-C-A 18232009-C-A P5_Dst A*
20389926-C-A 18228040-C-A P5_Dst A*
20388036-T-A 18226150-T-A P5_Dst A*
20388021-C-G 18226135-C-G P5_Dst A*
20382502-G-A 18220616-G-A P5_Dst A*
20380268-T-TGAGAAA 18218382-T-TGAGAAA P5_Dst A*
20378618-G-T 18216732-G-T P5_Dst A*
20373699-A-G 18211813-A-G P5_Dst A*
20370393-A-G 18208507-A-G P5_Dst A*
20351237-T-C 18189351-T-C P5_Dst A*
20312611-T-C 18150725-T-C P5_Dst A*
20457968-C-T 18296082-C-T P5_Dst A*
20298823-T-A 18136937-T-A P5_Dst A*
20296541-T-C 18134655-T-C P5_Dst A*
20283947-A-T 18122061-A-T P5_Dst A*
20267748-G-C 18105862-G-C P5_Dst A*
20266684-G-A 18104798-G-A P5_Dst A*
20258777-A-G 18096891-A-G P5_Dst A*
20244244-C-T 18082358-C-T P5_Dst A*
20232266-A-G 18070380-A-G P5_Dst A*
20081399-T-C 17969519-T-C P5_Dst A*
20076863-A-G 17964983-A-G P5_Dst A*
20076631-A-G 17964751-A-G P5_Dst A*
19912028-C-G 17800148-C-G P5_Prx A*
19681466-G-C 17569586-G-C P5_Prx A*
20452794-C-A 18290908-C-A P5_Dst A*
20586439-C-T 18424553-C-T P5_Dst A*
20548843-C-A 18386957-C-A P5_Dst A*
20901936-A-T 18740050-A-T P4_Dst A*
20971283-C-A 18809397-C-A P4_Dst A*
20980145-T-C 18818259-T-C P4_Dst A*
20982099-A-C 18820213-A-C P4_Dst A*
20992786-G-C 18830900-G-C P4_Dst A*
20965247-G-T 18803361-G-T P4_Dst A*
20882116-T-C 18720230-T-C P4_Dst A*
20964613-T-A 18802727-T-A P4_Dst A*
20964512-C-A 18802626-C-A P4_Dst A*
20933560-A-G 18771674-A-G P4_Dst A*
20887654-G-A 18725768-G-A P4_Dst A*
20928103-G-A 18766217-G-A P4_Dst A*
23721527-C-T 21559641-C-T A*
16136085-C-T 14024205-C-T P8_Dst A*
10961375-C-G A*
25889542-A-G 23743395-A-G P1_Y1 A*
20875846-G-A 18713960-G-A P4_Dst A*
26244421-T-G 24098274-T-G P1_Y1 A*
20917505-T-C 18755619-T-C P4_Dst A*
18490252-C-CT 16378372-C-CT P6_Dst 11×TA*
20688503-A-G 18526617-A-G P4_Prx A*
20571031-G-GT 18409145-G-GT P5_Dst 11×TA*
20602061-A-G 18440175-A-G P5_Dst A*
5833035-A-G 5964994-A-G FT325203 A*
56833497-C-T A*
20907152-G-A 18745266-G-A P4_Dst A*
20884575-G-T 18722689-G-T P4_Dst A*
18977442-G-A 16865562-G-A YY+
8361142-G-A 8493101-G-A YY+
11034092-C-A FT225397 +
17377460-C-T 15265580-C-T BY202398FT23422 Y+
22271952-T-G 20110066-T-G FGC35948 DYZ19 +
14484900-G-A 12364169-G-A FGC61370FGC71466 YY+
22613728-T-C 20451842-T-C FT31460 YY+
22613917-T-A 20452031-T-A FT31461 YY+
23164570-G-T 21002684-G-T FT31596 Y+
23743459-G-A 21581573-G-A FT31715 +
21777263-C-T 19615377-C-T BY135382 YY+
23565385-A-T 21403499-A-T ZS1224 M10377 YY+
24387362-T-C 22241215-T-C FT26964 +
28756448-C-T 26610301-C-T FT225396 Y+
56884594-A-T +
21341858-C-T 19179972-C-T FT31179 YY+
18202919-A-G 16091039-A-G FT30764 YY+
18226345-C-T 16114465-C-T FT30772 Y+
5700797-A-C 5832756-A-C FT28522 +
14573086-T-C 12461286-T-C FT29822 YY+
14240952-G-A 12120246-G-A FT29720 YY+
14116625-T-C 11995919-T-C BY93136 YY+
5569564-C-T 5701523-C-T FT28468 +
13827859-A-T 11707153-A-T FT29522 +
13807860-C-T 11687154-C-T FT328409 +
5972922-C-G 6104881-C-G FT28634 +
5115388-A-C 5247347-A-C FT28273 +
5992275-T-A 6124234-T-A FT28647 +
6962644-G-C 7094603-G-C FT28860 YY+
7618644-C-T 7750603-C-T FT28991 YY+
7784335-A-G 7916294-A-G FT29042 YY+
10953765-T-G FT225400 +
8258028-A-G 8389987-A-G FT29178 YY+
10045032-G-A 10207423-G-A FT225398 +
15227418-G-A 13115504-G-A Y+
5341812-A-G 5473771-A-G FT28370 +
5030249-C-T 5162208-C-T FT28238 +
3637819-T-C 3769778-T-C FT27703 +
9907736-C-G 10070127-C-G FT29508 Y+
18017495-A-C 15905615-A-C FT30713 Y+
12377234-A-T FT29797 +
17770446-C-T 15658566-C-T FT30632 YY+
2845821-CAAAAAAAAAAAAAA-C 2977780-CAAAAAAAAAAAAAA-C 28×A+
17448083-C-T 15336203-C-T FT30531 YY+
17415093-A-T 15303213-A-T FT30519 YY+
16833033-G-T 14721153-G-T FT30357 YY+
16634589-C-T 14522709-C-T FT30314 YY+
16608651-G-C 14496771-G-C FT30307 YY+
3981399-C-T 4113358-C-T FT27843 +
4097525-T-C 4229484-T-C FT27880 +
4321083-G-C 4453042-G-C FT27972 +
4733148-T-C 4865107-T-C FT28129 +
3832233-AACACACAC-A 3964192-AACACACAC-A 22×AC*
23969674-A-AACAC 21823527-A-AACAC 20×AC*
14612382-TAGAC-T 12500588-TAGAC-T 6×AGAC*
13819563-G-GA 11698857-G-GA A30 *
21078273-G-A 18916387-G-A **
26314369-G-C 24168222-G-C P1_Y1 **
22259804-G-T 20097918-G-T DYZ19 **
22259736-G-C 20097850-G-C DYZ19 **
17735169-T-C 15623289-T-C **
18845999-G-C 16734119-G-C **
13269076-A-C 11113400-A-C **
22259775-C-T 20097889-C-T DYZ19 **
13475831-T-G 11320155-T-G **
14879536-CTGTG-C 12767606-CTGTG-C 16×TG**
15646542-ATTT-A 13534662-ATTT-A 14×T**
56848234-C-T **
13643069-C-T 11487393-C-T **
18845418-T-C 16733538-T-C **
17996127-TACACAC-T 15884247-TACACAC-T P7_Gap 20×AC**
10836461-CTCCAT-C **
4320220-G-A 4452179-G-A **
7966047-A-G 8098006-A-G **
10887332-C-T FT225399 **
13314-G-T **
13364107-A-G 11208431-A-G **
13464977-A-G 11309301-A-G **
16687526-C-T 14575646-C-T **
16168883-GGGGGT-G 14057003-GGGGGT-G P8_Dst **
16168881-G-GAA 14057001-G-GAA P8_Dst **
13475819-T-C 11320143-T-C **
13475822-G-T 11320146-G-T **
13386222-C-T 11230546-C-T **
13386228-G-A 11230552-G-A **
16168892-A-AGGT 14057012-A-AGGT P8_Dst **
8501689-CTCTTCTTCT-C 8633648-CTCTTCTTCT-C 18×TCT***
27862535-TGAGAGAGA-T,TGA 25716388-TGAGAGAGA-T,TGA P1_Y2 22×GA***
13944051-CAAAAA-C 11823345-CAAAAA-C 22×A***
17534388-T-A 15422508-T-A S19861 Z6326 ***
56848205-C-T ***
17006261-CTTT-C,CTT 14894381-CTTT-C,CTT 17×T***
22475607-C-G 20313721-C-G Z22231 DYZ19 ***
4414167-CTTT-C 4546126-CTTT-C 18×T***
13588209-C-T 11432533-C-T 8×AT***
23007939-A-G 20846053-A-G ***
3908945-CA-C 4040904-CA-C 15×A***
22511565-C-T 20349679-C-T BY47386 DYZ19 ***
22511553-T-G 20349667-T-G DYZ19 ***
15991806-GTTTT-G 13879926-GTTTT-G 24×T***
6205625-A-G 6337584-A-G BY59463 IR3_Dst ***
13197843-CAAAAAAAAAAAAAAAAAAAA-C 42×A***
10648073-ATTC-A,ACTC ***
13386215-G-T 11230539-G-T ***
13166860-TTTATATTATA-T 10×TTATA***
56848194-T-C ***
56848198-A-T ***
56848221-A-G ***
56848231-C-T ***
14031744-TTCTTTC-T,TTCTTTCTTTCTTTC 11911038-TTCTTTC-T,TTCTTTCTTTCTTTC ***
15127841-T-A 13015928-T-A ***
3631252-T-C 3763211-T-C ***
5115842-CA-C 5247801-CA-C 10×A***
5986611-T-G 6118570-T-G ***
7664483-TCCCTTT-T,TCCCTC 7796442-TCCCTTT-T,TCCCTC ***
6205605-A-T 6337564-A-T IR3_Dst ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 8762871518358595004218370818
Used in age calculations1518358595004218370818
Counts of SNPs3024
Variant counts last updated 2020-06-05 03:15:34.



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