Hammond

BigY3: 684760
MDKA Birth: Northern Ireland

Tree Position

R-P312/S116 > Z46521 > Z46516 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Y19915

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
684760
hg19:Y:3255884-G-A hg38:Y:3387843-G-A A+
hg19:Y:4281886-T-C hg38:Y:4413845-T-C A+
hg19:Y:6401942-A-G hg38:Y:6533901-A-G A*
hg19:Y:13687076-A-T hg38:Y:11531400-A-T DYZ17 A*
hg19:Y:16147042-A-C hg38:Y:14035162-A-C P8_Dst A*
hg19:Y:16152807-T-C hg38:Y:14040927-T-C P8_Dst A*
hg19:Y:18013852-A-G hg38:Y:15901972-A-G P7_Dst YA*
hg19:Y:18353204-G-A hg38:Y:16241324-G-A P6_Prx A*
hg19:Y:18353213-T-C hg38:Y:16241333-T-C P6_Prx A*
hg19:Y:18357417-C-T hg38:Y:16245537-C-T P6_Prx A*
hg19:Y:18428539-T-C hg38:Y:16316659-T-C P6_Dst A*
hg19:Y:18466763-G-T hg38:Y:16354883-G-T P6_Dst A*
hg19:Y:18466963-A-G hg38:Y:16355083-A-G P6_Dst A*
hg19:Y:18469338-G-T hg38:Y:16357458-G-T P6_Dst A*
hg19:Y:18472677-A-C hg38:Y:16360797-A-C P6_Dst A*
hg19:Y:18519582-T-C hg38:Y:16407702-T-C P6_Dst A*
hg19:Y:19634256-A-C hg38:Y:17522376-A-C P5_Prx A*
hg19:Y:19735517-C-A hg38:Y:17623637-C-A P5_Prx A*
hg19:Y:19814248-C-T hg38:Y:17702368-C-T P5_Prx A*
hg19:Y:19829299-C-CTT hg38:Y:17717419-C-CTT P5_Prx 27×TA*
hg19:Y:20006424-A-C hg38:Y:17894544-A-C P5_Prx A*
hg19:Y:20106422-C-T hg38:Y:17994542-C-T P5_Dst A*
hg19:Y:20130356-T-C hg38:Y:18018476-T-C P5_Dst A*
hg19:Y:20213519-G-A hg38:Y:18051633-G-A P5_Dst A*
hg19:Y:20216461-G-A hg38:Y:18054575-G-A P5_Dst A*
hg19:Y:20216465-G-A hg38:Y:18054579-G-A P5_Dst A*
hg19:Y:20230226-A-C hg38:Y:18068340-A-C P5_Dst A*
hg19:Y:20230278-A-T hg38:Y:18068392-A-T P5_Dst A*
hg19:Y:20259236-C-A hg38:Y:18097350-C-A P5_Dst A*
hg19:Y:20269203-A-G hg38:Y:18107317-A-G P5_Dst A*
hg19:Y:20326870-A-G hg38:Y:18164984-A-G P5_Dst A*
hg19:Y:20331003-T-C hg38:Y:18169117-T-C P5_Dst A*
hg19:Y:20333976-A-G hg38:Y:18172090-A-G P5_Dst A*
hg19:Y:20335920-T-G hg38:Y:18174034-T-G P5_Dst A*
hg19:Y:20408114-T-C hg38:Y:18246228-T-C P5_Dst A*
hg19:Y:20443946-G-A hg38:Y:18282060-G-A P5_Dst A*
hg19:Y:20449472-T-C hg38:Y:18287586-T-C P5_Dst A*
hg19:Y:20453582-T-A hg38:Y:18291696-T-A P5_Dst A*
hg19:Y:20457804-C-A hg38:Y:18295918-C-A P5_Dst A*
hg19:Y:20473504-A-G hg38:Y:18311618-A-G P5_Dst A*
hg19:Y:20483027-A-G hg38:Y:18321141-A-G P5_Dst A*
hg19:Y:20506956-G-C hg38:Y:18345070-G-C P5_Dst A*
hg19:Y:20509105-A-G hg38:Y:18347219-A-G P5_Dst A*
hg19:Y:20530790-A-ATC hg38:Y:18368904-A-ATC P5_Dst A*
hg19:Y:20553714-C-A hg38:Y:18391828-C-A P5_Dst A*
hg19:Y:20561498-A-G hg38:Y:18399612-A-G P5_Dst A*
hg19:Y:20576669-T-C hg38:Y:18414783-T-C P5_Dst A*
hg19:Y:20576749-T-C hg38:Y:18414863-T-C P5_Dst A*
hg19:Y:20594815-A-T hg38:Y:18432929-A-T P5_Dst A*
hg19:Y:20893850-T-C hg38:Y:18731964-T-C P4_Dst A*
hg19:Y:20926872-A-G hg38:Y:18764986-A-G P4_Dst A*
hg19:Y:20927286-C-T hg38:Y:18765400-C-T P4_Dst A*
hg19:Y:20932612-G-GAA hg38:Y:18770726-G-GAA P4_Dst 17×AA*
hg19:Y:20973499-T-A hg38:Y:18811613-T-A P4_Dst A*
hg19:Y:20977224-A-G hg38:Y:18815338-A-G P4_Dst A*
hg19:Y:20978543-A-G hg38:Y:18816657-A-G P4_Dst A*
hg19:Y:21000230-T-C hg38:Y:18838344-T-C P4_Dst YA*
hg19:Y:21002991-A-G hg38:Y:18841105-A-G P4_Dst YA*
hg19:Y:21006845-G-T hg38:Y:18844959-G-T P4_Dst YA*
hg19:Y:21012995-A-G hg38:Y:18851109-A-G P4_Dst YA*
hg19:Y:21028163-T-C hg38:Y:18866277-T-C P4_Dst YA*
hg19:Y:25926375-T-A hg38:Y:23780228-T-A P1_Y1 A*
hg19:Y:25941995-T-G hg38:Y:23795848-T-G P1_Y1 A*
hg19:Y:26099574-G-A hg38:Y:23953427-G-A P1_Y1 A*
hg19:Y:15583562-A-G hg38:Y:13471682-A-G FT30064 YY+
hg19:Y:13490458-C-A hg38:Y:11334782-C-A FT444249 +
hg19:Y:15406921-C-T hg38:Y:13295041-C-T FT30024 YY+
hg19:Y:23468442-C-T hg38:Y:21306556-C-T FGC23904 YY+
hg19:Y:7681900-C-T hg38:Y:7813859-C-T Z3191 YY+
hg19:Y:16336867-C-A hg38:Y:14224987-C-A FT30234 YY+
hg19:Y:3230405-G-A hg38:Y:3362364-G-A FT27542 +
hg19:Y:3786298-G-A hg38:Y:3918257-G-A FT27757 +
hg19:Y:3875635-T-C hg38:Y:4007594-T-C FT27798 +
hg19:Y:4087548-C-T hg38:Y:4219507-C-T FT27876 +
hg19:Y:4590148-C-G hg38:Y:4722107-C-G FT28074 +
hg19:Y:5693757-T-G hg38:Y:5825716-T-G FT28518 +
hg19:Y:6794461-G-A hg38:Y:6926420-G-A YY+
hg19:Y:7620315-G-A hg38:Y:7752274-G-A FT28992 YY+
hg19:Y:8032480-T-C hg38:Y:8164439-T-C FT29111 YY+
hg19:Y:8143311-G-A hg38:Y:8275270-G-A FT29141 YY+
hg19:Y:8226907-A-G hg38:Y:8358866-A-G FT29170 YY+
hg19:Y:8642512-T-G hg38:Y:8774471-T-G FT29285 YY+
hg19:Y:9155380-G-C hg38:Y:9317771-G-C FT29418 Y+
hg38:Y:10617401-A-T FT219847 +
hg38:Y:10976053-C-T FT232697 +
hg19:Y:13463476-G-A hg38:Y:11307800-G-A FT232696 +
hg19:Y:13830566-A-T hg38:Y:11709860-A-T FT29524 DYZ17 +
hg19:Y:13882792-A-T hg38:Y:11762086-A-T FT29554 Y+
hg19:Y:13906978-T-G hg38:Y:11786272-T-G FT29569 Y+
hg19:Y:13945641-C-G hg38:Y:11824935-C-G FT29598 Y+
hg19:Y:14455076-A-G hg38:Y:12334349-A-G FT29780 YY+
hg19:Y:14519019-A-G hg38:Y:12407220-A-G FT29805 YY+
hg19:Y:14807026-G-A hg38:Y:12695097-G-A FT29880 YY+
hg19:Y:16727355-G-C hg38:Y:14615475-G-C FT30337 Y+
hg19:Y:17344629-T-C hg38:Y:15232749-T-C FT30489 YY+
hg19:Y:17595975-G-A hg38:Y:15484095-G-A FT30587 YY+
hg19:Y:17944542-A-C hg38:Y:15832662-A-C FT30693 YY+
hg19:Y:18985510-A-G hg38:Y:16873630-A-G BY125276 YY+
hg19:Y:19300150-C-T hg38:Y:17188270-C-T FT31006 Y+
hg19:Y:21551669-G-A hg38:Y:19389783-G-A FT31246 Y+
hg19:Y:21800563-G-T hg38:Y:19638677-G-T FT31305 YY+
hg19:Y:28498617-T-C hg38:Y:26352470-T-C FT31834 +
hg19:Y:8555979-T-TTTTTG hg38:Y:8687938-T-TTTTTG S190 8×TTTTG*
hg19:Y:16833655-TACAC-T hg38:Y:14721775-TACAC-T 17×AC*
hg19:Y:22345256-T-A hg38:Y:20183370-T-A DYZ19 *
hg19:Y:58980937-C-A hg38:Y:56834790-C-A *
hg19:Y:10056938-C-T hg38:Y:10219329-C-T *
hg19:Y:22345244-A-G hg38:Y:20183358-A-G DYZ19 *
hg19:Y:22345257-T-C hg38:Y:20183371-T-C DYZ19 *
hg38:Y:10959261-CTCCATTCCAT-C **
hg19:Y:20740459-G-A hg38:Y:18578573-G-A P4_Prx **
hg19:Y:28006376-AC-A hg38:Y:25860229-AC-A P1_Y2 **
hg19:Y:23050330-T-C hg38:Y:20888444-T-C **
hg19:Y:16765563-A-G hg38:Y:14653683-A-G **
hg19:Y:17989589-C-CAT hg38:Y:15877709-C-CAT P7_Prx **
hg19:Y:19749309-CTTTT-C hg38:Y:17637429-CTTTT-C P5_Prx 22×T**
hg19:Y:3790812-G-T hg38:Y:3922771-G-T **
hg19:Y:5502116-G-C hg38:Y:5634075-G-C FTB42621 **
hg19:Y:5702274-A-T hg38:Y:5834233-A-T **
hg38:Y:11028067-C-T FTB42622 **
hg19:Y:13418943-G-A hg38:Y:11263267-G-A FTB42623 **
hg19:Y:14307399-A-G hg38:Y:12186693-A-G FTB36208 **
hg19:Y:17027084-G-T hg38:Y:14915204-G-T **
hg19:Y:17066052-A-G hg38:Y:14954172-A-G **
hg19:Y:17213250-GA-G hg38:Y:15101370-GA-G **
hg19:Y:19768447-T-C hg38:Y:17656567-T-C P5_Prx **
hg19:Y:19857577-A-AGC hg38:Y:17745697-A-AGC P5_Prx **
hg19:Y:21744460-C-T hg38:Y:19582574-C-T **
hg19:Y:22475438-C-T hg38:Y:20313552-C-T DYZ19 **
hg19:Y:22475885-C-T hg38:Y:20313999-C-T BY223459 DYZ19 **
hg19:Y:22856734-T-A hg38:Y:20694848-T-A FTB38546 **
hg19:Y:24302295-G-T hg38:Y:22156148-G-T P3_t1 **
hg19:Y:2795550-G-T hg38:Y:2927509-G-T ***
hg19:Y:59006827-TAC-T hg38:Y:56860680-TAC-T 11×AC***
hg19:Y:8207556-C-CT hg38:Y:8339515-C-CT 10×T***
hg19:Y:22269379-G-T hg38:Y:20107493-G-T FGC51957 DYZ19 ***
hg19:Y:4981838-GGTGT-G hg38:Y:5113797-GGTGT-G 14×GT***
hg19:Y:14297038-CTATA-C hg38:Y:12176332-CTATA-C 10×TA***
hg38:Y:10810593-G-C ***
hg19:Y:4908175-CAAAAA-C hg38:Y:5040134-CAAAAA-C 17×A***
hg19:Y:13223503-G-GAGGGA hg38:Y:11067827-G-GAGGGA ***
hg19:Y:7093259-GAAA-G hg38:Y:7225218-GAAA-G 14×A***
hg19:Y:16665446-CTGTG-C hg38:Y:14553566-CTGTG-C 17×TG***
hg19:Y:13466023-T-C hg38:Y:11310347-T-C ***
hg19:Y:15866268-CAAAAAAAAAAAAAAAAAAAA-C hg38:Y:13754388-CAAAAAAAAAAAAAAAAAAAA-C 43×A***
hg19:Y:13223527-A-T hg38:Y:11067851-A-T ***
hg19:Y:21807142-G-A hg38:Y:19645256-G-A ***
hg19:Y:4200055-CAAA-C hg38:Y:4332014-CAAA-C 23×A***
hg19:Y:16558177-TTATA-T hg38:Y:14446297-TTATA-T 11×TA***
hg19:Y:13223456-G-A hg38:Y:11067780-G-A ***
hg19:Y:28529232-CAAAA-C hg38:Y:26383085-CAAAA-C 23×A***
hg19:Y:13463183-TAC-CGT,T hg38:Y:11307507-TAC-CGT,T ***
hg19:Y:14795058-G-T hg38:Y:12683129-G-T ***
hg19:Y:3588114-A-G hg38:Y:3720073-A-G ***
hg19:Y:14339106-CTT-C,CT hg38:Y:12218401-CTT-C,CT 19×T***
hg19:Y:15116919-T-C hg38:Y:13005006-T-C ***
hg19:Y:22230800-T-G hg38:Y:20068914-T-G DYZ19 ***
hg19:Y:22661493-ATGTGTGTG-A,ATG hg38:Y:20499607-ATGTGTGTG-A,ATG 26×TG***
hg38:Y:56867491-ATTTTT-A,ATTT 11×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 6847601507342794470498347963
Used in age calculations1507342794470498347963
Counts of SNPs3120
Variant counts last updated 2025-01-26 03:42:59.


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