Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > CTS3655 > FT135171 > L627 > BY3364 > BY3368 > BY111495

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
13448901-C-T 11293225-C-T A*
20327827-C-A 18165941-C-A P5_Dst A*
28816967-G-T 26670820-G-T A*
20047795-G-A 17935915-G-A E97 P5_Prx A*
20766914-G-A 18605028-G-A P4_Prx A*
20325071-T-C 18163185-T-C P5_Dst A*
19707674-G-C 17595794-G-C P5_Prx A*
20685184-G-A 18523298-G-A P4_Prx A*
13449917-T-G 11294241-T-G A*
16101272-G-T 13989392-G-T P8_Prx A*
20598413-G-T 18436527-G-T P5_Dst A*
18284648-A-C 16172768-A-C BY175765 P6_Prx A*
18430125-C-A 16318245-C-A P6_Dst A*
24286512-C-G 22140365-C-G P3_t1 A*
21553622-T-A 19391736-T-A FT84019 Y+
21251684-C-T 19089798-C-T BY177240 YY++
23363535-C-T 21201649-C-T FT84145 Y+
4383698-A-G 4515657-A-G FT82795 +
3198526-A-T 3330485-A-T FT82437 +
16276049-T-C 14164169-T-C FT83766 YY+**
5773264-C-T 5905223-C-T *
5656083-A-G 5788042-A-G **
56849363-G-T **
7100813-C-A 7232772-C-A **
3463059-A-G 3595018-A-G **
10781891-C-A **
9173208-C-A 9335599-C-A **
2672963-C-T 2804922-C-T **
10976011-C-A **
13487223-A-G 11331547-A-G **
13455746-T-TCAAG 11300070-T-TCAAG **
56847256-G-A **
13455744-C-CA 11300068-C-CA **
22587966-A-AT 20426080-A-AT **
13455730-A-C 11300054-A-C **
18059362-G-A 15947482-G-A **
9623332-T-C 9785723-T-C IR3_Prx **
9471109-A-G 9633500-A-G **
20489745-T-TC 18327859-T-TC P5_Dst **
22360187-C-G 20198301-C-G DYZ19 **
7088063-T-C 7220022-T-C **
5756992-C-A 5888951-C-A **
5895185-A-G 6027144-A-G **
13459429-C-A 11303753-C-A **
6008897-C-T 6140856-C-T **
7338494-C-A 7470453-C-A **
4948165-A-C 5080124-A-C **
11676656-G-A BY49949 FGC79200 **
13945542-C-T 11824836-C-T **
4220936-C-T 4352895-C-T **
27943970-C-CCACA 25797823-C-CCACA P1_Y2 14×CA**
6286927-G-T 6418886-G-T Z1205 IR3_Dst **
18412199-T-C 16300319-T-C P6_Gap **
19540717-G-T 17428837-G-T **
22437710-T-G 20275824-T-G DYZ19 **
19720782-A-T 17608902-A-T P5_Prx **
9936739-A-G 10099130-A-G **
10745352-T-TTCCAA **
9974304-C-A 10136695-C-A **
16625404-G-A 14513524-G-A **
16422206-TA-T 14310326-TA-T **
10977145-C-A **
13457741-C-CACAAGGATTG 11302065-C-CACAAGGATTG **
21272254-GT-G 19110368-GT-G 8×T**
16116711-T-A 14004831-T-A P8_Prx **
10756178-G-A **
3334646-G-T 3466605-G-T **
22483514-G-T 20321628-G-T DYZ19 **
22876964-TA-T,TAA 20715078-TA-T,TAA 20×A***
22446811-A-G 20284925-A-G DYZ19 ***
23197360-CAAAA-C,CAAAAAA 21035474-CAAAA-C,CAAAAAA 17×A***
22893515-C-T 20731629-C-T ***
4841256-C-T 4973215-C-T ***
4707512-C-CAA 4839471-C-CAA 18×A***
4675104-ATT-A,AT 4807063-ATT-A,AT 12×T***
24429979-C-T 22283832-C-T ***
27906809-A-G 25760662-A-G P1_Y2 ***
28229180-G-A 26083033-G-A P1_b4 ***
22440936-T-C 20279050-T-C DYZ19 ***
19275255-C-T 17163375-C-T ***
5080362-CT-C,CTT 5212321-CT-C,CTT 15×T***
22298041-T-C 20136155-T-C DYZ19 ***
22130227-T-G 19968341-T-G ***
7016319-A-G 7148278-A-G ***
13905270-G-C 11784564-G-C ***
7084525-G-A 7216484-G-A ***
18825675-A-G 16713795-A-G FGC58306 ***
18539217-C-T 16427337-C-T ***
18539211-G-A 16427331-G-A ***
8666723-GTTTTTTT-G,GTT 8798682-GTTTTTTT-G,GTT 25×T***
17950816-A-G 15838936-A-G ***
16688057-T-C 14576177-T-C ***
15980721-TAAA-T,TAAAAA 13868841-TAAA-T,TAAAAA 17×A***
14114915-C-T 11994209-C-T ***
4377969-CTTTT-C,CTTT 4509928-CTTTT-C,CTTT 19×T***
15140611-C-A 13028698-C-A ***
4089221-GAT-G 4221180-GAT-G ***
21224779-ATT-A,AT 19062893-ATT-A,AT 19×T***
3093647-C-A 3225606-C-A ***
15163300-ATTT-A 13051386-ATTT-A 15×T***
5393341-C-A 5525300-C-A ***
10980674-A-T ***
21694777-C-A 19532891-C-A ***
14530847-AAT-A 12419048-AAT-A ***
16519316-C-CAA 14407436-C-CAA 15×A***
18850375-C-A 16738495-C-A Y102866 ***
17872639-CTTT-C 15760759-CTTT-C 17×T***
10785308-C-G ***
9771940-CTTTT-C 9934331-CTTTT-C 18×T***
7753294-T-C 7885253-T-C ***
6440357-AT-A 6572316-AT-A 8×T***
11643724-G-A ***
28591181-A-C 26445034-A-C ***
13710401-G-A 11554725-G-A ***
23009991-G-A 20848105-G-A M5330 CTS11205 PF1881 L854 ***
18060306-A-ATGTG 15948426-A-ATGTG ***
3434217-A-G 3566176-A-G FT317203 ***
16299577-TA-T 14187697-TA-T DC338 10×A***
23831252-CTTTTTTT-C 21669366-CTTTTTTT-C 26×T***
7137231-A-G 7269190-A-G FGC1514 Y6054 ***
13448853-A-C,T 11293177-A-C,T ***
8599677-AT-A,ATT 8731636-AT-A,ATT 17×T***
14460043-C-T 12339316-C-T ***
3921135-TA-T 4053094-TA-T ***
2960062-CAAAA-C,CAAAAA 3092021-CAAAA-C,CAAAAA 17×A***
3114682-C-G 3246641-C-G ***
4816954-AT-A,ATT 4948913-AT-A,ATT 13×T***
28522751-CTTTT-C 26376604-CTTTT-C 17×T***
56831711-C-A ***
18901350-C-A 16789470-C-A ***
18873527-G-A 16761647-G-A ***
15411117-A-G 13299237-A-G ***
13475122-C-A 11319446-C-A ***
14347558-C-A 12226853-C-A ***
13575944-G-A 11420268-G-A ***
15864395-C-A 13752515-C-A ***
16814099-A-T 14702219-A-T Y70541 ***
13608707-T-A 11453031-T-A ***
28673407-AT-A 26527260-AT-A 9×T***
15439842-T-A 13327962-T-A ***
21694797-C-A 19532911-C-A ***
13482388-T-A 11326712-T-A ***
3347120-C-A 3479079-C-A ***
7084518-G-A 7216477-G-A ***
28605190-G-GAAAT 26459043-G-GAAAT 6×AAAT***
11656461-C-A ***
13808748-T-TCTTCC 11688042-T-TCTTCC ***
13976083-CA-C,CAA 11855377-CA-C,CAA 15×A***
28569383-T-A 26423236-T-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 449050972000279803457906829
Kit: 4490501465954491875238198139
Used in age calculations1465954491875238198139
Counts of SNPs42
Variant counts last updated 2022-06-16 03:31:59.

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