Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > A1134 > ~24847026-G-A > Z20766 > ~20076039-T-C > BY58140 > Y128056 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
651405
56833856-A-ACTCTT A*
20720848-G-GA 18558962-G-GA P4_Prx 11×AA*
56831563-T-C A*
56831575-T-A A*
13448128-T-A 11292452-T-A A*
13449648-T-A 11293972-T-A A*
13450738-T-C 11295062-T-C A*
19751457-G-GA 17639577-G-GA P5_Prx 11×AA*
13478078-C-T 11322402-C-T A*
13478091-T-A 11322415-T-A A*
20868952-T-TA 18707066-T-TA P4_Dst 12×AA*
28812878-A-C 26666731-A-C A*
13448423-G-A 11292747-G-A A*
13449848-C-A 11294172-C-A A*
56834254-A-ATTCCT A*
56834093-A-T A*
56834266-T-G A*
56834397-C-T A*
13449583-A-G 11293907-A-G A*
56836887-T-C A*
28812859-A-G 26666712-A-G A*
28812870-A-T 26666723-A-T A*
28634133-T-TA 26487986-T-TA 10×AA*
13449700-A-T 11294024-A-T A*
13451508-C-A 11295832-C-A A*
13450836-C-T 11295160-C-T A*
56832708-C-G A*
13449930-A-AACTCC 11294254-A-AACTCC A*
20493539-T-TA 18331653-T-TA P5_Dst 16×AA*
13449667-G-T 11293991-G-T A*
56829746-C-T A*
13448373-T-C 11292697-T-C A*
56836754-C-T A*
56833815-T-A A*
20868988-C-CT 18707102-C-CT P4_Dst 10×TA*
13451444-C-G 11295768-C-G A*
13449626-T-A 11293950-T-A A*
13451301-C-G 11295625-C-G A*
28816677-G-A 26670530-G-A A*
56833860-C-T A*
56832320-C-T A*
13451375-G-T 11295699-G-T A*
56834352-C-T A*
13450613-C-G 11294937-C-G A*
56831538-C-A A*
56833996-C-T A*
13450549-C-T 11294873-C-T A*
13451511-C-T 11295835-C-T A*
56832340-C-A A*
56832290-C-T A*
13451488-C-T 11295812-C-T A*
13478970-T-C 11323294-T-C A*
13449416-A-T 11293740-A-T A*
56833840-C-T A*
13451659-C-A 11295983-C-A A*
13451653-A-C 11295977-A-C A*
56834400-C-CTAT A*
20505787-T-A 18343901-T-A P5_Dst A*
20942951-C-CA 18781065-C-CA P4_Dst 13×AA*
13449692-A-G 11294016-A-G A*
13451291-C-T 11295615-C-T A*
20934370-C-A 18772484-C-A P4_Dst A*
20532190-C-CA 18370304-C-CA P5_Dst 16×AA*
20539978-A-G 18378092-A-G P5_Dst A*
20565501-T-C 18403615-T-C P5_Dst A*
20583469-G-A 18421583-G-A P5_Dst A*
20846991-T-C 18685105-T-C P4_Dst A*
20849318-A-G 18687432-A-G P4_Dst A*
20862072-C-T 18700186-C-T P4_Dst A*
20870048-T-C 18708162-T-C P4_Dst A*
20889046-A-G 18727160-A-G P4_Dst A*
20915502-T-A 18753616-T-A P4_Dst A*
20916700-A-G 18754814-A-G P4_Dst A*
20924165-G-C 18762279-G-C P4_Dst A*
20934374-G-T 18772488-G-T P4_Dst A*
20518629-G-A 18356743-G-A P5_Dst A*
20935394-T-A 18773508-T-A P4_Dst A*
20951634-A-G 18789748-A-G P4_Dst A*
20966871-G-A 18804985-G-A P4_Dst A*
21009093-T-C 18847207-T-C P4_Dst YA*
21015235-A-G 18853349-A-G P4_Dst YA*
21020472-G-A 18858586-G-A P4_Dst YA*
21020482-G-A 18858596-G-A P4_Dst YA*
21020484-G-A 18858598-G-A P4_Dst YA*
21024051-T-A 18862165-T-A P4_Dst YA*
25522197-C-T 23376050-C-T P1_gr1 A*
26037174-T-C 23891027-T-C P1_Y1 A*
56832324-C-A A*
20531810-G-A 18369924-G-A P5_Dst A*
20495725-A-C 18333839-A-C P5_Dst A*
18341345-A-T 16229465-A-T P6_Prx A*
20315744-C-T 18153858-C-T P5_Dst A*
18452490-C-T 16340610-C-T P6_Dst A*
18455635-T-G 16343755-T-G P6_Dst A*
18530638-G-T 16418758-G-T P6_Dst A*
19653412-C-A 17541532-C-A P5_Prx A*
20077125-A-G 17965245-A-G P5_Dst A*
20107548-C-T 17995668-C-T P5_Dst A*
20247893-C-T 18086007-C-T P5_Dst A*
20254964-C-T 18093078-C-T P5_Dst A*
20257587-G-T 18095701-G-T P5_Dst A*
20263582-C-A 18101696-C-A P5_Dst A*
20264885-T-C 18102999-T-C P5_Dst A*
20315743-C-T 18153857-C-T P5_Dst A*
20328488-T-C 18166602-T-C P5_Dst A*
20490334-A-G 18328448-A-G P5_Dst A*
20339948-C-T 18178062-C-T P5_Dst A*
20365762-T-C 18203876-T-C P5_Dst A*
20389488-A-G 18227602-A-G P5_Dst A*
20427903-C-T 18266017-C-T P5_Dst A*
20427919-G-A 18266033-G-A P5_Dst A*
20434144-G-A 18272258-G-A P5_Dst A*
20434148-A-G 18272262-A-G P5_Dst A*
20453570-C-CT 18291684-C-CT P5_Dst 12×TA*
20457147-A-G 18295261-A-G P5_Dst A*
20469824-A-G 18307938-A-G P5_Dst A*
20480752-T-C 18318866-T-C P5_Dst A*
20486174-G-A 18324288-G-A P5_Dst A*
20021530-C-A 17909650-C-A P5_Prx A*
56831529-A-T A*
56833677-C-T A*
13449636-G-A 11293960-G-A A*
13449688-T-C 11294012-T-C A*
20859789-G-GA 18697903-G-GA P4_Dst 13×AA*
13449683-T-A 11294007-T-A A*
58976897-C-T 56830750-C-T A*
25964727-C-CT 23818580-C-CT P1_Y1 16×TA*
56833729-A-C A*
3555449-A-T 3687408-A-T A*
13449643-C-A 11293967-C-A A*
13451634-C-CATTCCATTCT 11295958-C-CATTCCATTCT A*
58977922-G-A 56831775-G-A A*
58978410-C-T 56832263-C-T A*
58982822-G-A 56836675-G-A A*
58980671-A-T 56834524-A-T A*
58978883-C-CTCCAT 56832736-C-CTCCAT A*
20067114-G-GA 17955234-G-GA P5_Dst 10×AA*
20333440-T-A 18171554-T-A P5_Dst A*
5695930-C-CA 5827889-C-CA 14×AA*
10805417-A-C A*
58977470-G-T 56831323-G-T A6147 A*
56836399-A-T A17075 A*
19644383-G-GT 17532503-G-GT P5_Prx 10×TA*
14458558-C-CA 12337831-C-CA 21×AA*
58978153-T-TCTAAA 56832006-T-TCTAAA A*
58978860-C-G 56832713-C-G A*
58975742-A-T 56829595-A-T A*
13449345-C-G 11293669-C-G A*
20110561-G-GA 17998681-G-GA P5_Dst 20×AA*
13449680-A-T 11294004-A-T A*
56833648-C-T A*
13448372-C-T 11292696-C-T A*
20087764-G-GA 17975884-G-GA P5_Dst 13×AA*
13449420-T-C 11293744-T-C A*
20478953-C-CA 18317067-C-CA P5_Dst 15×AA*
21011657-G-GT 18849771-G-GT P4_Dst 11×TA*
20892325-G-GA 18730439-G-GA P4_Dst 11×AA*
13448083-T-C 11292407-T-C A*
58980575-C-A 56834428-C-A A*
13135792-G-T 10625278-G-T A*
58975794-A-C 56829647-A-C A*
56836876-T-C A*
58982887-A-T 56836740-A-T A*
13449306-C-T 11293630-C-T A*
56831736-C-T A*
3400962-C-G 3532921-C-G A*
26505530-C-CA 24359383-C-CA P1_Y1 11×AA*
58977823-A-C 56831676-A-C A*
13448087-C-T 11292411-C-T A*
13137634-T-C 10627120-T-C A*
6093051-T-C 6225010-T-C A*
13242044-C-T 11086368-C-T A*
13449336-A-C 11293660-A-C A*
13128355-C-G 10617841-C-G BY42910 +
14964211-ACT-A 12852286-ACT-A +
5411568-A-C 5543527-A-C FT32153 +
10991578-G-A +
19257300-T-C 17145420-T-C FT32700 YY+
22991232-T-C 20829346-T-C FT6358 YY+
28812832-C-A 26666685-C-A *
17109091-AACACAC-A,AAC 14997211-AACACAC-A,AAC 25×AC*
13488489-C-G 11332813-C-G *
13447460-T-A 11291784-T-A *
13450125-C-G,T 11294449-C-G,T *
13135194-C-T 10624680-C-T *
58991884-G-C 56845737-G-C *
3609264-A-G 3741223-A-G *
4834245-T-TAA 4966204-T-TAA 23×A*
3404101-A-G 3536060-A-G *
3421223-A-T 3553182-A-T *
13478909-C-G 11323233-C-G *
3609328-A-G 3741287-A-G *
13463216-G-A 11307540-G-A *
14082047-T-TTCTATCTA 11961341-T-TTCTATCTA 11×TCTA*
13135214-G-A 10624700-G-A *
13135209-T-A 10624695-T-A *
10763116-C-T *
10986824-T-G *
3984667-GA-G 4116626-GA-G 12×A*
10692436-C-A *
13463914-G-A 11308238-G-A *
3628012-A-AT 3759971-A-AT 14×T*
10671904-T-A *
13135213-T-C 10624699-T-C *
27838006-TTG-T 25691859-TTG-T P1_Y2 **
16515946-A-T 14404066-A-T **
13453179-C-A 11297503-C-A **
15658179-CATATATATATACACGTATATTATATATATATACGTGT-C 13546299-CATATATATATACACGTATATTATATATATATACGTGT-C **
14737440-T-C 12625508-T-C **
19329685-C-A 17217805-C-A **
14290677-C-T 12169971-C-T **
9626103-G-T 9788494-G-T IR3_Prx **
19505265-G-A 17393385-G-A **
2790511-C-A 2922470-C-A **
20757341-C-A 18595455-C-A P4_Prx **
20757361-C-A 18595475-C-A P4_Prx **
18738605-C-T 16626725-C-T **
12371950-CA-C **
22642054-T-A 20480168-T-A **
5557238-CA-C 5689197-CA-C 23×A**
16164441-AC-A 14052561-AC-A P8_Dst **
22182052-C-T 20020166-C-T **
23213330-G-A 21051444-G-A **
25086556-A-G 22940409-A-G g1 **
13459366-CTGTTG-C 11303690-CTGTTG-C **
56828263-CCATGT-C **
28454698-G-A 26308551-G-A P1_gr2 **
5435736-T-A 5567695-T-A **
18848233-C-T 16736353-C-T **
58974431-A-G 56828284-A-G **
10627871-A-C **
4021930-C-CT 4153889-C-CT 15×T***
17932405-CA-C 15820525-CA-C 13×A***
4671300-TA-T 4803259-TA-T 13×A***
13223530-GGAATGGAA-G 11067854-GGAATGGAA-G ***
13476473-C-G 11320797-C-G ***
10988055-T-A ***
13488540-C-G 11332864-C-G ***
21105995-AT-A 18944109-AT-A 10×T***
13611405-CA-C 11455729-CA-C 16×A***
4503511-AT-A 4635470-AT-A 14×T***
3775829-TA-T 3907788-TA-T 12×A***
6093042-T-C 6225001-T-C ZS7959 ***
13476440-G-C 11320764-G-C ***
3609342-T-A 3741301-T-A ***
13457953-C-G 11302277-C-G ***
3403707-C-A 3535666-C-A ***
7164467-CAAA-C,CA 7296426-CAAA-C,CA 24×A***
3812718-CA-C 3944677-CA-C 17×A***
4336555-AAT-A 4468514-AAT-A 9×AT***
4386824-G-A 4518783-G-A ***
4473970-G-C 4605929-G-C ***
4277201-CT-C 4409160-CT-C 20×T***
4200055-CAAAA-C 4332014-CAAAA-C 23×A***
13909001-TA-T 11788295-TA-T 11×A***
5781302-GA-G 5913261-GA-G 13×A***
5288945-TA-T 5420904-TA-T 13×A***
28492932-ATT-A,AT 26346785-ATT-A,AT 22×T***
21788486-CTT-C 19626600-CTT-C 12×T***
3174374-CTT-C 3306333-CTT-C 18×T***
24387715-CTA-C 22241568-CTA-C ***
13455784-AAGTCC-A 11300108-AAGTCC-A ***
23438879-CTT-C,CT 21276993-CTT-C,CT 21×T***
4360890-CAA-C 4492849-CAA-C 16×A***
22515367-A-G 20353481-A-G ***
21151784-A-G 18989898-A-G ***
6413855-CT-C 6545814-CT-C 14×T***
13457924-T-G 11302248-T-G ***
28581630-GAT-G 26435483-GAT-G 19×AT***
13455756-T-A 11300080-T-A ***
3232253-T-TA 3364212-T-TA 13×A***
13455713-C-T 11300037-C-T ***
10055774-C-CA 10218165-C-CA 15×A***
13478929-C-A 11323253-C-A ***
10013177-C-T 10175568-C-T ***
3482590-CAAA-C 3614549-CAAA-C 22×A***
4917601-CT-C 5049560-CT-C 16×T***
10961378-C-G,T ***
22339608-G-A 20177722-G-A DYZ19 ***
6682767-T-C 6814726-T-C ***
21846452-CTTTTT-C 19684566-CTTTTT-C 26×T***
3909109-CA-C 4041068-CA-C 22×A***
3446607-CA-C 3578566-CA-C 25×A***
14047600-CTT-C 11926894-CTT-C 15×T***
16356565-G-GA 14244685-G-GA 10×A***
13405198-A-G 11249522-A-G ***
13339775-C-G 11184099-C-G ***
18232033-C-CT 16120153-C-CT 11×T***
28812837-G-T 26666690-G-T ***
16679404-ATTT-A 14567524-ATTT-A 18×T***
15557033-CAAAA-C,CAA 13445153-CAAAA-C,CAA 18×A***
4190419-T-TA 4322378-T-TA 10×A***
3970985-C-CTT 4102944-C-CTT 17×T***
3550572-CTCA-C,CT 3682531-CTCA-C,CT ***
13449513-ACTCC-A,ATTCC 11293837-ACTCC-A,ATTCC ***
10648089-T-C ***
3809136-ATTT-A 3941095-ATTT-A 31×T***
2685644-CTTT-C 2817603-CTTT-C 20×T***
13924970-CAA-C 11804264-CAA-C 20×A***
28809710-G-T 26663563-G-T ***
15146696-T-C 13034783-T-C ***
4196001-T-TA 4327960-T-TA 15×A***
8314146-CTTT-C 8446105-CTTT-C 24×T***
3884962-G-GT 4016921-G-GT 11×T***
10013179-G-T 10175570-G-T ***
10988041-G-C ***
3908945-C-CA 4040904-C-CA 15×A***
5784062-CA-C 5916021-CA-C 21×A***
58974430-C-T 56828283-C-T ***
13455774-A-T 11300098-A-T ***
3514522-CTT-C 3646481-CTT-C 16×T***
10692390-T-C ***
14143412-G-GA,GAA 12022706-G-GA,GAA 12×A***
28500806-C-CTT 26354659-C-CTT 18×T***
28812845-A-T 26666698-A-T ***
21553403-CTTTTTT-C 19391517-CTTTTTT-C 31×T***
15109457-AT-A 12997544-AT-A 14×T***
5224763-CA-C 5356722-CA-C 13×A***
4537586-CTTT-C 4669545-CTTT-C 21×T***
3543166-C-CA 3675125-C-CA 14×A***
13455720-ATTC-A 11300044-ATTC-A ***
28526659-TA-T 26380512-TA-T 12×A***
59022271-C-T 56876124-C-T 50×A***
3483826-TAC-T 3615785-TAC-T 13×AC***
10763177-A-C ***
13206784-C-CAA,CAAA 11051108-C-CAA,CAAA 14×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 6514051520079495259798367801
Used in age calculations1520079495259798367801
Counts of SNPs82
Variant counts last updated 2019-04-10 00:21:37.



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