Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331 > Z2186 > L1066 > CTS9881 > BY14632 > BY160561

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
127812
24247410-T-TAC 22101263-T-TAC P3_b1 12×ACA*
20391409-G-GA 18229523-G-GA P5_Dst 12×AA*
3094131-C-CT 3226090-C-CT 11×TA*
13450778-C-CTCCAG 11295102-C-CTCCAG A*
13449638-T-C 11293962-T-C A*
56832476-C-A A*
10627024-A-C A*
13450888-C-G 11295212-C-G A*
28816788-C-G 26670641-C-G A*
10971267-T-C A*
13449667-G-T 11293991-G-T A*
13470811-C-G 11315135-C-G A*
10776182-T-C A*
20678980-T-TTCTCAAGGTTCACC 18517094-T-TTCTCAAGGTTCACC P4_Prx A*
10627016-C-A A*
13223198-A-G 11067522-A-G A*
10627025-A-C A*
13241566-G-T 11085890-G-T A*
25579255-C-CA 23433108-C-CA P1_gr1 22×AA*
10627042-T-G A*
10627028-T-C A*
13450595-A-G 11294919-A-G A*
56832730-A-T A*
13479145-C-CT 11323469-C-CT A*
13479157-G-A 11323481-G-A A*
56833677-C-G A*
13450766-T-TATTCC 11295090-T-TATTCC A*
4909005-T-C 5040964-T-C FT7646 +
5553300-T-C 5685259-T-C FT7959 +
4746308-T-G 4878267-T-G FT7593 +
7740029-C-T 7871988-C-T FT8566 YY+
9450050-G-A 9612441-G-A FT8923 YY+
13911120-T-G 11790414-T-G FT9055 Y+
6422195-C-T 6554154-C-T FT8222 +
3536439-AT-A 3668398-AT-A +
4080358-C-T 4212317-C-T FT7304 +
14185509-G-GA 12064803-G-GA 8×A+
21305738-G-T 19143852-G-T YY+
3220600-GT-G 3352559-GT-G 14×T*
56825735-GTGTACATATATATATATATATATATATATGGTTCCAT-G,GTGTACATATATATATATATATATGATTCCAT *
3200263-CTGTGTGTG-C 3332222-CTGTGTGTG-C 15×TG*
13488454-C-A 11332778-C-A *
19686218-C-CCT 17574338-C-CCT P5_Prx **
2775015-T-C 2906974-T-C **
19126440-A-ACC 17014560-A-ACC **
19126446-A-AT 17014566-A-AT **
7453523-G-C 7585482-G-C IR1_L **
16319730-A-G 14207850-A-G **
13459247-G-T 11303571-G-T 9×TTCCA**
26437236-C-A 24291089-C-A P1_Y1 **
4076256-C-CA 4208215-C-CA 21×A**
18985974-A-C 16874094-A-C **
20669272-T-TTCG 18507386-T-TTCG P4_Prx 11×TTG**
13932140-C-CAT 11811434-C-CAT 13×AT**
18829335-C-CAT 16717455-C-CAT **
13465947-G-T 11310271-G-T **
6148578-GT-G 6280537-GT-G IR3_Dst **
26437215-T-A 24291068-T-A P1_Y1 **
19048056-A-T 16936176-A-T **
22852199-C-CT 20690313-C-CT 16×T**
23223378-G-A 21061492-G-A **
2790645-C-T 2922604-C-T **
7094897-C-CAA 7226856-C-CAA 16×A**
16996491-A-T 14884611-A-T **
15518688-C-T 13406808-C-T **
13480156-C-T 11324480-C-T **
13480158-C-T 11324482-C-T **
14307506-A-G 12186800-A-G **
17161584-C-G 15049704-C-G **
14256271-G-A 12135565-G-A **
17474945-CTTTTT-C 15363065-CTTTTT-C 15×T**
14121284-G-A 12000578-G-A **
17541520-A-G 15429640-A-G **
17725689-G-A 15613809-G-A **
4228110-C-A 4360069-C-A **
13457923-T-G 11302247-T-G **
2790651-C-T 2922610-C-T **
13205592-A-AG 11049916-A-AG **
18579081-T-C 16467201-T-C **
2790649-C-T 2922608-C-T **
28598204-A-T 26452057-A-T ***
28598197-A-C 26452050-A-C ***
24355728-GATATAT-G 22209581-GATATAT-G 9×AT***
16836521-CT-C 14724641-CT-C 8×T***
21687981-CACAC-C,CACAG 19526095-CACAC-C,CACAG ***
5130314-T-C 5262273-T-C ***
21412261-CTTTTTTTTTTTTTTTT-C,CT 19250375-CTTTTTTTTTTTTTTTT-C,CT 36×T***
21127604-A-AAT 18965718-A-AAT ***
19753693-CTTTTTTTT-C 17641813-CTTTTTTTT-C P5_Prx 25×T***
7195501-CTGTGTGTGTG-C 7327460-CTGTGTGTGTG-C 17×TG***
18761900-C-T 16650020-C-T ***
7867976-G-A 7999935-G-A ***
13479112-C-T 11323436-C-T ***
13479115-C-T 11323439-C-T ***
16009461-T-C 13897581-T-C ***
3871498-A-G 4003457-A-G ***
13469965-A-G,T 11314289-A-G,T ***
3327918-G-A 3459877-G-A ***
13329987-CT-C 11174311-CT-C 15×T***
5248619-ATT-A 5380578-ATT-A 19×T***
27593158-AT-A 25447011-AT-A P1_Y2 8×T***
5866323-G-GA 5998282-G-GA 11×A***
11021456-C-CTATTCCATTCCACTCTACTCCAGTG ***
2680691-AT-A 2812650-AT-A 12×T***
6675843-GAA-G 6807802-GAA-G 12×A***
13463067-T-C 11307391-T-C ***
5571890-CTTT-C 5703849-CTTT-C 16×T***
5273214-CTT-C 5405173-CTT-C 23×T***
13466050-G-A 11310374-G-A ***
14420787-CTT-C 12300062-CTT-C 18×T***
2833178-CT-C,CTT 2965137-CT-C,CTT 19×T***
3181857-CAAA-C 3313816-CAAA-C 20×A***
6099384-CAAA-C 6231343-CAAA-C 17×A***
22083932-G-GA 19922046-G-GA 11×A***
13540253-AACAC-A 11384577-AACAC-A 23×AC***
13529513-G-A 11373837-G-A ***
13241598-G-C 11085922-G-C ***
13241593-T-C 11085917-T-C ***
5259878-T-C 5391837-T-C ***
3411996-TTG-T 3543955-TTG-T 23×TG***
13241584-T-C 11085908-T-C ***
4964729-ATTT-A 5096688-ATTT-A 34×T***
28471990-GA-G 26325843-GA-G 12×A***
3327913-T-C 3459872-T-C ***
4669265-ATT-A 4801224-ATT-A 15×T***
3327905-G-A 3459864-G-A ***
3327900-TA-T 3459859-TA-T ***
26500451-AACAC-A,AAC 24354304-AACAC-A,AAC P1_Y1 23×AC***
3543166-CAA-C,CA 3675125-CAA-C,CA 14×A***
4848574-GTTTTTT-G 4980533-GTTTTTT-G 29×T***
5997198-GT-G 6129157-GT-G 15×T***
10896442-C-CT,CTT ***
9120876-A-AT ***
28539174-C-CA 26393027-C-CA 20×A***
13485733-G-T 11330057-G-T ***
13464440-C-A 11308764-C-A ***
17648536-A-AT 15536656-A-AT 22×T***
56843030-A-G ***
5520571-G-GA 5652530-G-GA 11×A***
28633965-TA-T 26487818-TA-T 10×A***
6052051-TA-T 6184010-TA-T 10×A***
6418002-CT-C 6549961-CT-C 12×T***
13930171-CAA-C 11809465-CAA-C 21×A***
5511878-CT-C 5643837-CT-C 12×T***
28155841-G-T 26009694-G-T P1_b4 ***
21755795-CTT-C ***
14819674-CTT-C,CT 12707741-CTT-C,CT 15×T***
6089764-GTT-G 6221723-GTT-G 31×T***
28815100-A-G 26668953-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1278121495951893722638295937
Used in age calculations1495951893722638295937
Counts of SNPs43
Variant counts last updated 2019-05-11 10:45:38.



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