Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > ZZ77 > Z216 > S452 > PH1171 > Y19587

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
22296413-G-T 20134527-G-T DYZ19 A+
22296436-G-C 20134550-G-C DYZ19 A+
22296434-A-G 20134548-A-G DYZ19 A+
56831779-G-C A*
13464040-C-A 11308364-C-A BY85673 A*
13464056-G-T 11308380-G-T A*
56842503-C-A A*
56833483-C-T A*
19644383-G-GT 17532503-G-GT P5_Prx 10×TA*
25511351-A-AT 23365204-A-AT P1_gr1 14×TA*
19752002-C-T 17640122-C-T P5_Prx A*
20761545-C-A 18599659-C-A P4_Prx A*
56834118-A-G A*
26117333-A-G 23971186-A-G P1_Y1 A*
28816787-T-A 26670640-T-A A*
25929815-C-T 23783668-C-T P1_Y1 A*
22270199-T-G 20108313-T-G DYZ19 +
8726342-T-G 8858301-T-G FT20096 YY+
2911696-GA-G 3043655-GA-G 9×A+
3435464-A-G 3567423-A-G FT15274 +
3521376-T-G 3653335-T-G FT15373 +
4089362-T-C 4221321-T-C FT16067 +
4089372-A-T 4221331-A-T FT16068 +
4137775-A-G 4269734-A-G FT16122 +
7200006-G-A 7331965-G-A FT19040 Y+
7409022-C-A 7540981-C-A FT19205 YY+
8348832-T-C 8480791-T-C FT19809 YY+
8680235-G-T 8812194-G-T YY+
9762158-T-C 9924549-T-C FT20512 Y+
21037451-T-G 18875565-T-G FT25066 Y+
9847784-A-C 10010175-A-C FT20572 YY+
10805101-G-A +
13334157-C-A 11178481-C-A +
14123978-G-T 12003272-G-T FT21073 YY+
15019891-A-C 12907980-A-C FT21761 YY+
16721159-T-A 14609279-T-A FT22953 Y+
23753031-G-A 21591145-G-A FT26801 Y+
19078152-T-C 16966272-T-C FT24675 YY+
23105277-GC-G 20943391-GC-G +
22459815-G-A 20297929-G-A DYZ19 +
19111149-CT-C 16999269-CT-C +
19181255-T-A 17069375-T-A Y+
8467103-G-A 8599062-G-A SK1765 YY+
17926774-C-A 15814894-C-A FT23901 YY+
22436327-T-C 20274441-T-C DYZ19 *
6941484-T-TTC 7073443-T-TTC 13×TC*
56841505-C-T *
10689777-C-CTCCAT *
6044858-A-T 6176817-A-T **
6330115-CA-C 6462074-CA-C IR3_Dst 18×A**
10001058-C-CT 10163449-C-CT 16×T**
56829038-C-T **
8813441-G-C 8945400-G-C **
19827097-A-G 17715217-A-G P5_Prx **
17074692-C-G 14962812-C-G **
17054915-G-A 14943035-G-A 10×TA**
19532883-T-A 17421003-T-A **
25991108-AT-A 23844961-AT-A P1_Y1 8×T**
10790447-C-T **
18305794-C-T 16193914-C-T P6_Prx **
18041612-G-A 15929732-G-A **
15962326-T-A 13850446-T-A **
4089437-G-A 4221396-G-A **
22239231-T-A 20077345-T-A DYZ19 **
23952164-AAAT-A 21806017-AAAT-A 8×AAT**
3446515-G-T 3578474-G-T **
8296263-GA-G 8428222-GA-G 17×A**
25886281-T-C 23740134-T-C P1_Y1 **
2897454-G-A 3029413-G-A **
23009419-T-C 20847533-T-C **
17074677-G-A 14962797-G-A **
3634752-T-C 3766711-T-C **
13223453-G-A 11067777-G-A ***
10769918-G-C ***
18035691-TTTTTG-G,T 15923811-TTTTTG-G,T ***
28596399-GTTT-G 26450252-GTTT-G 16×T***
27527402-T-C 25381255-T-C P1_Y2 ***
18653012-A-G 16541132-A-G ***
13459258-T-C 11303582-T-C ***
28522376-C-CTT 26376229-C-CTT 18×T***
22885133-T-TTA 20723247-T-TTA 10×TA***
18685992-GAA-G 16574112-GAA-G 13×A***
21830205-C-CAA 19668319-C-CAA 25×A***
3430864-G-T 3562823-G-T FGC81648 ***
22166535-CT-C,CTT 20004649-CT-C,CTT 29×T***
22019790-G-GA 19857904-G-GA 10×A***
23009368-C-T 20847482-C-T ***
5905890-CAA-C 6037849-CAA-C 27×A***
3854457-TAC-T 3986416-TAC-T 12×AC***
13452080-T-C 11296404-T-C ***
13222333-G-A 11066657-G-A ***
13808702-A-T 11687996-A-T ***
17703236-TAAA-T,TA 15591356-TAAA-T,TA 22×A***
3205858-C-CA 3337817-C-CA 15×A***
13477235-T-G 11321559-T-G ***
13477247-C-G 11321571-C-G ***
13477279-C-A 11321603-C-A ***
13477287-G-T 11321611-G-T ***
21134925-AT-A,ATT 18973039-AT-A,ATT 22×T***
20574944-GTT-G,GT 18413058-GTT-G,GT P5_Dst 19×T***
5399016-ATT-A 5530975-ATT-A 18×T***
3039839-CTT-C 3171798-CTT-C 22×T***
4773481-CTTT-C 4905440-CTTT-C 25×T***
3603491-ATTT-A,AT 3735450-ATTT-A,AT 24×T***
3901391-T-C 4033350-T-C ***
4956079-CT-C 5088038-CT-C 13×T***
3086544-CAAA-C 3218503-CAAA-C 18×A***
5041629-A-G 5173588-A-G ***
5211296-C-CTT 5343255-C-CTT 16×T***
4586352-C-CT 4718311-C-CT 11×T***
4880709-GTT-G 5012668-GTT-G 22×T***
9114145-CTT-C ***
9075188-CT-C,CTT 9237579-CT-C,CTT 20×T***
10616875-A-G ***
24485675-CT-C,CTT 22339528-CT-C,CTT 15×T***
10949581-T-C ***
13504532-T-C 11348856-T-C ***
13477217-G-T 11321541-G-T ***
22164376-C-CA 20002490-C-CA 22×A***
22920605-CTTT-C 20758719-CTTT-C 25×T***
15449892-CTTTTTT-C,CTT 13338012-CTTTTTT-C,CTT 21×T***
3732952-C-CTT 3864911-C-CTT 14×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 8736291510087794676788347713
Used in age calculations1510087794676788347713
Counts of SNPs1511
Variant counts last updated 2019-08-26 23:04:09.

Big Tree Main Page