Bellow

FB38: B242783-A, BigY3: B242783

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > FGC3216 > FGC3197 > Y82590 > BY73349

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFB38
B242783-A		BigY3
B242783
16114653-A-T 14002773-A-T P8_Prx A*
16149174-G-T 14037294-G-T P8_Dst ***A*
16161625-C-T 14049745-C-T P8_Dst ***A*
16169680-G-T 14057800-G-T P8_Dst YA*
18010698-G-A 15898818-G-A P7_Dst YA*
18433158-A-G 16321278-A-G P6_Dst A*
18506521-T-TA 16394641-T-TA P6_Dst 9×AA*
18511674-C-T 16399794-C-T P6_Dst ***A*
18535327-T-C 16423447-T-C P6_Dst A*
20058891-A-G 17947011-A-G P5_Prx A*
20058902-G-A 17947022-G-A P5_Prx A*
20067590-A-T 17955710-A-T P5_Dst A*
20091281-G-A 17979401-G-A P5_Dst ***A*
20223076-A-T 18061190-A-T P5_Dst ***A*
20259968-A-G 18098082-A-G P5_Dst A*
20273139-A-G 18111253-A-G P5_Dst A*
20278235-T-C 18116349-T-C P5_Dst A*
20283669-G-A 18121783-G-A P5_Dst ***A*
20305344-T-A 18143458-T-A P5_Dst A*
20310054-G-A 18148168-G-A P5_Dst ***A*
20328398-T-A 18166512-T-A P5_Dst A*
20331411-A-T 18169525-A-T P5_Dst A*
20338525-A-G 18176639-A-G P5_Dst ***A*
20341156-A-G 18179270-A-G P5_Dst A*
20366200-A-G 18204314-A-G P5_Dst ***A*
20388084-T-C 18226198-T-C P5_Dst ***A*
20410600-T-C 18248714-T-C P5_Dst ***A*
20412546-G-A 18250660-G-A P5_Dst A*
20418212-C-T 18256326-C-T P5_Dst A*
20419217-C-T 18257331-C-T P5_Dst A*
20445977-C-A 18284091-C-A P5_Dst A*
20446253-A-C 18284367-A-C P5_Dst A*
20466171-T-C 18304285-T-C P5_Dst ***A*
20480294-G-A 18318408-G-A P5_Dst A*
20482692-A-G 18320806-A-G P5_Dst ***A*
20483188-C-T 18321302-C-T P5_Dst A*
20483194-C-T 18321308-C-T P5_Dst A*
20484207-G-A 18322321-G-A P5_Dst A*
20484208-G-A 18322322-G-A P5_Dst A*
20509137-C-T 18347251-C-T P5_Dst A*
20509139-C-T 18347253-C-T P5_Dst A*
20509144-C-T 18347258-C-T P5_Dst A*
20522382-A-G 18360496-A-G P5_Dst A*
20524549-T-C 18362663-T-C P5_Dst A*
20537072-C-T 18375186-C-T P5_Dst ***A*
20550583-A-G 18388697-A-G P5_Dst A*
20553646-G-A 18391760-G-A P5_Dst ***A*
20553659-G-A 18391773-G-A P5_Dst ***A*
20554869-G-A 18392983-G-A P5_Dst ***A*
20588323-T-C 18426437-T-C P5_Dst ***A*
20843120-C-T 18681234-C-T P4_Dst A*
20843611-A-T 18681725-A-T P4_Dst A*
20851912-G-A 18690026-G-A P4_Dst A*
20851916-G-A 18690030-G-A P4_Dst A*
20851953-G-A 18690067-G-A P4_Dst A*
20851955-G-A 18690069-G-A P4_Dst A*
20851959-G-A 18690073-G-A P4_Dst A*
20851963-G-A 18690077-G-A P4_Dst A*
20854647-G-A 18692761-G-A P4_Dst ***A*
20862415-T-C 18700529-T-C P4_Dst ***A*
20890069-A-G 18728183-A-G P4_Dst ***A*
20891626-G-A 18729740-G-A P4_Dst ***A*
20898183-G-A 18736297-G-A P4_Dst ***A*
20898192-G-A 18736306-G-A P4_Dst ***A*
20898228-G-A 18736342-G-A P4_Dst A*
20901439-C-T 18739553-C-T P4_Dst ***A*
20904826-T-TA 18742940-T-TA P4_Dst 9×AA*
20915249-G-A 18753363-G-A P4_Dst A*
20918930-G-A 18757044-G-A P4_Dst A*
20926863-C-T 18764977-C-T P4_Dst A*
20937851-T-C 18775965-T-C P4_Dst A*
20941951-A-G 18780065-A-G P4_Dst ***A*
20963682-C-A 18801796-C-A P4_Dst A*
20963789-G-T 18801903-G-T P4_Dst A*
20965886-A-T 18804000-A-T P4_Dst A*
20977357-A-G 18815471-A-G P4_Dst ***A*
20983048-G-A 18821162-G-A P4_Dst ***A*
20990889-T-C 18829003-T-C P4_Dst ***A*
21007722-C-T 18845836-C-T P4_Dst Y***A*
21027716-A-G 18865830-A-G P4_Dst YA*
13448162-TTCCAG-CTCCAC 11292486-TTCCAG-CTCCAC +
11665428-T-C FT450888 DYZ17 ++
9327706-CTG-C 9490097-CTG-C 8×TG*
13706867-T-A 11551191-T-A BY49946 DYZ17 *
59019088-CGCG-TGCC 56872941-CGCG-TGCC *
10691942-C-G *
19987682-G-GT 17875802-G-GT P5_Prx 15×T*
56825755-ATATATATATGG-GA *
10789398-TGCA-CTCT *
10789411-ATTGCATT-CTTCCACA *
9984886-AAT-TAG 10147277-AAT-TAG *
10693705-GTTCCGTTG-ATTGCGTTT *
13447040-GTA-ATC 11291364-GTA-ATC *
13447645-GCTCCACTCCACTCC-ATTCCACTCCACTCT 11291969-GCTCCACTCCACTCC-ATTCCACTCCACTCT 4×CTCCA*
13448322-TTCCAG-CTCCAC,TTCCAC 11292646-TTCCAG-CTCCAC,TTCCAC *
13448358-CCT-CC,TCT 11292682-CCT-CC,TCT *
13448943-GCACGA-CCACGC,CGACGC 11293267-GCACGA-CCACGC,CGACGC *
13449753-CAACCCCATTCTATTC-AAACCCCATTCCATTG,AAGCCCCATTCCATTC 11294077-CAACCCCATTCTATTC-AAACCCCATTCCATTG,AAGCCCCATTCCATTC *
13450521-CTTCACTCCAC-ATCCATCCCAT,CTCCAC 11294845-CTTCACTCCAC-ATCCATCCCAT,CTCCAC *
13451679-TACTTCAT-AACTCCAT,GACTCCAA 11296003-TACTTCAT-AACTCCAT,GACTCCAA *
13535693-GTGTGTGTACATAC-ATAT,GTGTGTGTATAT 11380017-GTGTGTGTACATAC-ATAT,GTGTGTGTATAT *
56831992-GCACTCCACTG-CCACTCAACTA,CCACTCCACTG *
56855234-ATAAAAAAAAAG-TTAAAAAAAA *
56861817-AAAAAAAAAAAAAAAAAAAAAACCTG-AAAAAAAAAAAAACCTA,CAAACAAACAAACAAACAAACAAACAAAAAAAACCTA *
56879318-A-AGA,AGG *
22811008-CA-TG 20649122-CA-TG *
9340761-ACC-A,ACACACC 9503152-ACC-A,ACACACC *
19790172-GAA-G 17678292-GAA-G P5_Prx 15×A*
22502688-GCACG-CCACT,GCCCT 20340802-GCACG-CCACT,GCCCT DYZ19 *
22506732-GTCCG-ATCCA,GTCCA 20344846-GTCCG-ATCCA,GTCCA DYZ19 *
22361071-CTA-AG 20199185-CTA-AG DYZ19 **
22337705-A-C 20175819-A-C DYZ19 **
22330091-A-T 20168205-A-T DYZ19 **
20587808-AAT-A 18425922-AAT-A P5_Dst 10×AT**
19210017-C-G 17098137-C-G **
20385533-A-G 18223647-A-G FGC61340 P5_Dst **
27616494-C-CT 25470347-C-CT P1_Y2 9×T**
13726727-T-C 11571051-T-C DYZ17 **
22311524-C-G 20149638-C-G DYZ19 **
4431198-T-A 4563157-T-A **
4431199-T-G 4563158-T-G **
4431200-G-T 4563159-G-T **
13726423-CAAAAT-TTAAAA 11570747-CAAAAT-TTAAAA DYZ17 **
24597813-C-CT 22451666-C-CT P3_t2 22×T**
13453333-C-T 11297657-C-T **
13453344-CAT-C 11297668-CAT-C **
13453348-C-CTG 11297672-C-CTG **
26421473-GCT-G 24275326-GCT-G P1_Y1 **
13726354-C-T 11570678-C-T DYZ17 **
18511195-C-A 16399315-C-A P6_Dst 30×A**
20654981-AATATATATAT-A 18493095-AATATATATAT-A P4_Prx 21×AT**
3062269-G-A 3194228-G-A **
18734469-C-T 16622589-C-T ****
22295627-G-T 20133741-G-T DYZ19 **
26199619-G-A 24053472-G-A P1_Y1 **
13726739-C-T 11571063-C-T DYZ17 **
27412865-A-ATG 25266718-A-ATG P1_g3 17×TG**
28345690-T-TAC 26199543-T-TAC P1_gr2 19×AC**
6948088-GTTTG-TTTT 7080047-GTTTG-TTTT **
13704762-G-T 11549086-G-T DYZ17 **
13708396-G-T 11552720-G-T DYZ17 **
13710266-GTAG-ATAT 11554590-GTAG-ATAT DYZ17 **
14119783-CC-TT 11999077-CC-TT **
12372008-T-C **
17268868-C-T 15156988-C-T **
28791103-TCA-GTG 26644956-TCA-GTG **
27129870-CA-C 24983723-CA-C P1_g3 16×A**
8176336-A-G 8308295-A-G **
9729369-G-A 9891760-G-A IR3_Prx **
16498193-A-C 14386313-A-C **
18477490-T-C 16365610-T-C P6_Dst **
19084172-C-A 16972292-C-A **
20399536-GAG-AAA 18237650-GAG-AAA P5_Dst **
20549962-C-T 18388076-C-T P5_Dst **
20637578-G-GATAT 18475692-G-GATAT P4_Prx 25×AT**
20928597-A-G 18766711-A-G P4_Dst **
21198846-C-A 19036960-C-A **
21198856-G-C 19036970-G-C **
24562264-C-G 22416117-C-G P3_t2 **
24621589-T-C 22475442-T-C P3_t2 **
24895923-C-T 22749776-C-T g1 **
24919995-G-A 22773848-G-A g1 **
24920011-G-A 22773864-G-A g1 **
25240847-G-A 23094700-G-A P2_r1 **
25781006-G-T 23634859-G-T P1_b3 **
26228681-CTTTCTTTC-ATTTATTTA 24082534-CTTTCTTTC-ATTTATTTA P1_Y1 **
26540623-CT-C 24394476-CT-C P1_g2 16×T**
27243496-A-G 25097349-A-G P1_g3 **
27283010-G-A 25136863-G-A P1_g3 **
27283020-G-A 25136873-G-A P1_g3 **
27283043-G-A 25136896-G-A P1_g3 **
27501961-G-T 25355814-G-T P1_Y2 **
27528876-T-A 25382729-T-A P1_Y2 **
27589805-TTGGTAGCTTGA-T 25443658-TTGGTAGCTTGA-T P1_Y2 **
27844566-TGGTC-GGTA 25698419-TGGTC-GGTA P1_Y2 **
27997468-CAA-C 25851321-CAA-C P1_Y2 23×A**
28349495-C-G 26203348-C-G P1_gr2 **
28349513-C-T 26203366-C-T P1_gr2 **
28366218-T-A 26220071-T-A P1_gr2 **
28369397-AGC-GGT 26223250-AGC-GGT P1_gr2 **
28403603-C-T 26257456-C-T P1_gr2 **
28422559-G-T 26276412-G-T P1_gr2 **
28422624-C-T 26276477-C-T P1_gr2 **
28440195-C-T 26294048-C-T P1_gr2 **
28445693-C-A 26299546-C-A P1_gr2 **
28449163-AT-A 26303016-AT-A P1_gr2 12×T**
28449408-C-T 26303261-C-T P1_gr2 **
28452427-A-C 26306280-A-C P1_gr2 **
56858328-GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAAGAAAGAAAAGAAAGAAAGA-AGAAAGAAAAGAAAGAAAAAGAAAGAAAGAAAAGAAAGAAAAGAAAGAAAGAAAAGAAAGAAAAGAAAGAAAG **
27781145-AT-A 25634998-AT-A P1_Y2 10×T***
20991160-AT-A 18829274-AT-A P4_Dst 18×T***
22489844-G-T 20327958-G-T DYZ19 ***
27421234-A-G 25275087-A-G P1_g3 ***
13479082-C-A 11323406-C-A ***
20337720-AT-A 18175834-AT-A P5_Dst 9×T***
22451050-T-C 20289164-T-C DYZ19 ***
22364782-C-A 20202896-C-A DYZ19 ***
22359302-A-T 20197416-A-T DYZ19 ***
27173659-G-GA 25027512-G-GA P1_g3 13×A***
22454336-C-A 20292450-C-A DYZ19 ***
9232958-C-G 9395349-C-G ***
9355440-A-G 9517831-A-G ***
27414820-C-T 25268673-C-T P1_g3 ***
22242849-A-G 20080963-A-G BY28138 DYZ19 ***
22484716-T-A 20322830-T-A K624 DYZ19 ***
22490515-G-A 20328629-G-A DYZ19 ***
27357557-T-TA 25211410-T-TA P1_g3 14×A***
26046002-CT-C 23899855-CT-C P1_Y1 13×T***
20086349-T-TA 17974469-T-TA P5_Dst 10×A***
24577878-CA-C 22431731-CA-C P3_t2 25×A***
22503236-C-A 20341350-C-A DYZ19 ***
22237712-ACT-GTA 20075826-ACT-GTA DYZ19 ***
22429245-AGTA-GGTC 20267359-AGTA-GGTC DYZ19 ***
28366313-G-A 26220166-G-A P1_gr2 ***
13977154-GTC-ATG 11856448-GTC-ATG ***
59012707-TG-GT 56866560-TG-GT ***
27397108-A-AT 25250961-A-AT P1_g3 10×T***
16298639-CT-C 14186759-CT-C 9×T***
5257534-A-AT 5389493-A-AT 10×T***
27809848-G-A 25663701-G-A P1_Y2 ***
9403521-GT-G,GTT 9565912-GT-G,GTT 21×T***
15151502-CAA-C,CA 13039589-CAA-C,CA 23×A***
9932055-T-G 10094446-T-G ***
22256043-C-A 20094157-C-A DYZ19 ***
20774922-GAAA-G 18613036-GAAA-G P4_Prx 22×A***
13850557-A-C 11729851-A-C FT286238 DYZ17 ***
4307641-A-AT 4439600-A-AT 10×T***
13455776-G-A 11300100-G-A ***
17046715-GT-G,GTT 14934835-GT-G,GTT 25×T***
5147441-CAAA-C,CAA 5279400-CAAA-C,CAA 30×A***
8692608-A-C 8824567-A-C ***
13222482-A-G 11066806-A-G ***
13222487-A-G 11066811-A-G FT441195 ***
13304158-T-C 11148482-T-C ***
12308680-T-TTA,TTATATA 14×TA***
14795058-G-T 12683129-G-T ***
16305744-T-A 14193864-T-A ***
20815408-CATATATATAT-C,CATATATATATATAT 18653522-CATATATATAT-C,CATATATATATATAT P4_Gap 22×AT***
22853770-C-T 20691884-C-T ***
22962008-GTTTT-G,GTTTTT 20800122-GTTTT-G,GTTTTT 27×T***
22490195-T-G 20328309-T-G DYZ19 ***
13728215-G-A 11572539-G-A DYZ17 ***
27242386-G-T 25096239-G-T P1_g3 ***
20567560-AAT-A 18405674-AAT-A P5_Dst 9×AT***
18365541-A-ATG 16253661-A-ATG P6_Prx 20×TG***
27494909-T-G 25348762-T-G P1_Y2 ***
4505414-ATT-A,AT 4637373-ATT-A,AT 22×T***
10624514-TCG-CCA ***
13461829-GGCA-TTCG 11306153-GGCA-TTCG ***
9057380-TTGT-A ***
13204215-ATGGTGATGGTGATGA-GTGG 11048539-ATGGTGATGGTGATGA-GTGG ***
10669466-TTCCA-CTCCT ***
13487357-TAA-CAC 11331681-TAA-CAC ***
3720173-ACCCG-CTCTT 3852132-ACCCG-CTCTT ***
4973668-CAA-C,CA 5105627-CAA-C,CA 19×A***
8100637-CAAA-C,CAA 8232596-CAAA-C,CAA 37×A***
10624485-G-AT ***
10678578-CAA-AAT ***
10683323-ATTTCTTTCGAC-CTATCTTTTGAA ***
10693693-CTTC-TTTA ***
11034826-GTCCATTG-CTCCATTC ***
13348249-G-A 11192573-G-A ***
13470444-TCTGCG-CCTGTT 11314768-TCTGCG-CCTGTT ***
13471196-TGCTC-AGCTA 11315520-TGCTC-AGCTA ***
13488299-GGACCGCG-AGACTGCT 11332623-GGACCGCG-AGACTGCT ***
13488370-GCC-ACT 11332694-GCC-ACT ***
13488944-GCAGGGGTT-CCTGGGGTC 11333268-GCAGGGGTT-CCTGGGGTC ***
13489804-CCC-ACT 11334128-CCC-ACT ***
13504673-CAC-TGT 11348997-CAC-TGT ***
14071348-ACCCGACTT-TCCTGAC,TCCTGACTT 11950642-ACCCGACTT-TCCTGAC,TCCTGACTT ***
17301238-CAAA-C,CA 15189358-CAAA-C,CA 23×A***
18688500-C-AAA 16576620-C-AAA 20×A***
20815408-CATAT-C,CAT 18653522-CATAT-C,CAT P4_Gap 22×AT***
21838971-G-GA,GAA 19677085-G-GA,GAA 20×A***
21753665-TG-CA ***
28797106-GAATG-TAATT 26650959-GAATG-TAATT ***
56828308-CAAATCA-CCATTCC,TGATTCT ***
56828330-ATTCC-ATTCTTTGCA,TTGCA ***
56829155-TTTCGAGTCCA-ATTCGAGTCCG ***
56867493-TTTTTTTT-ATA ***
24681832-T-C 22535685-T-C P3_b2 ***
28343290-A-G 26197143-A-G P1_gr2 ***
28351165-G-A 26205018-G-A P1_gr2 ***
28381085-T-C 26234938-T-C P1_gr2 ***
6401942-ATCGCTGTTA-GTCGCTGTCG 6533901-ATCGCTGTTA-GTCGCTGTCG ***
7059312-G-A 7191271-G-A ***
8006935-GG-AA 8138894-GG-AA ***
9218496-CTG-C 9380887-CTG-C 8×TG***
9527769-C-T 9690160-C-T ***
9530936-AT-A 9693327-AT-A IR3_Prx ***
9531142-C-A 9693533-C-A IR3_Prx ***
9534724-A-G 9697115-A-G IR3_Prx ***
9564029-A-T 9726420-A-T IR3_Prx ***
9599136-T-G 9761527-T-G IR3_Prx ***
9620962-C-T 9783353-C-T IR3_Prx ***
9670439-T-C 9832830-T-C IR3_Prx ***
9698956-C-T 9861347-C-T IR3_Prx ***
9729119-G-C 9891510-G-C IR3_Prx ***
18378959-C-A 16267079-C-A P6_Prx 28×T***
18501106-C-A 16389226-C-A P6_Dst ***
18509525-A-C 16397645-A-C P6_Dst ***
19652904-A-G 17541024-A-G P5_Prx ***
19695012-AT-A 17583132-AT-A P5_Prx 23×T***
20010762-C-T 17898882-C-T P5_Prx ***
20084810-C-A 17972930-C-A P5_Dst ***
20092207-A-C 17980327-A-C P5_Dst ***
20112089-G-A 18000209-G-A P5_Dst ***
20139776-T-C 18027896-T-C P5_Dst ***
20196584-G-A 18034698-G-A P5_Dst ***
20230152-T-TA,TAA 18068266-T-TA,TAA P5_Dst 16×A***
20232617-A-G 18070731-A-G P5_Dst ***
20246601-TA-T 18084715-TA-T P5_Dst ***
20283658-G-A 18121772-G-A P5_Dst ***
20295869-T-C 18133983-T-C P5_Dst ***
20312385-C-T 18150499-C-T P5_Dst ***
20389872-G-A 18227986-G-A P5_Dst ***
20399512-G-A 18237626-G-A P5_Dst ***
20399518-G-A 18237632-G-A P5_Dst ***
20399526-G-A 18237640-G-A P5_Dst ***
20510438-T-C 18348552-T-C P5_Dst ***
20851933-G-A 18690047-G-A P4_Dst ***
20851953-GAGGAAGACTG-AAAAAAAACTA 18690067-GAGGAAGACTG-AAAAAAAACTA P4_Dst ***
20893559-T-C 18731673-T-C P4_Dst ***
20977661-T-A 18815775-T-A P4_Dst ***
22268233-GTTT-CTTC 20106347-GTTT-CTTC DYZ19 ***
22275639-CCTA-TCTT 20113753-CCTA-TCTT DYZ19 ***
22281980-C-T 20120094-C-T DYZ19 ***
22298716-ACT-GCA 20136830-ACT-GCA DYZ19 ***
22337771-C-T 20175885-C-T DYZ19 ***
22355746-A-G 20193860-A-G DYZ19 ***
22364479-T-C 20202593-T-C DYZ19 ***
22430833-G-T 20268947-G-T DYZ19 ***
22483467-ATG-TTT 20321581-ATG-TTT DYZ19 ***
22488341-T-C 20326455-T-C DYZ19 ***
22490175-AGTGT-TGTGG 20328289-AGTGT-TGTGG DYZ19 ***
22495654-G-C 20333768-G-C DYZ19 ***
22502828-TTGTG-ATGTC,TTGTC 20340942-TTGTG-ATGTC,TTGTC DYZ19 ***
22504526-C-G 20342640-C-G DYZ19 ***
22505043-GGCCT-AACCA,GACCT 20343157-GGCCT-AACCA,GACCT DYZ19 ***
22810971-TAC-T 20649085-TAC-T ***
21768124-T-C ***
24023162-T-C 21877015-T-C ***
24558155-G-A 22412008-G-A P3_t2 ***
24570625-T-C 22424478-T-C P3_t2 ***
24628014-A-T 22481867-A-T P3_t2 ***
24628063-GAGG-AAAA 22481916-GAGG-AAAA P3_t2 ***
24642024-T-C 22495877-T-C P3_t2 ***
24680465-T-C 22534318-T-C P3_b2 ***
24701562-G-T 22555415-G-T P3_b2 ***
24851241-A-G 22705094-A-G IR1_R ***
24907781-T-TA 22761634-T-TA g1 22×A***
25085892-A-G 22939745-A-G g1 ***
25291897-T-C 23145750-T-C P2_r1 ***
25378556-G-A 23232409-G-A P2_r2 ***
25412653-CTT-C 23266506-CTT-C P2_r2 16×T***
25445007-A-G 23298860-A-G P2_r2 ***
25486075-C-T 23339928-C-T P2_r2 ***
25491097-TTTTG-T 23344950-TTTTG-T P2_r2 4×TTTG***
25682559-A-G 23536412-A-G P1_b3 ***
26376499-CA-AA,C 24230352-CA-AA,C P1_Y1 18×A***
26387069-G-GT 24240922-G-GT P1_Y1 13×T***
26501807-C-CA 24355660-C-CA P1_Y1 15×A***
27121711-C-T 24975564-C-T P1_g3 ***
27122319-A-T 24976172-A-T P1_g3 ***
27130320-GAA-G 24984173-GAA-G P1_g3 14×A***
27136198-A-G 24990051-A-G P1_g3 ***
27149071-C-T 25002924-C-T P1_g3 ***
27189243-C-T 25043096-C-T P1_g3 ***
27197778-A-G 25051631-A-G P1_g3 ***
27214359-C-T 25068212-C-T P1_g3 ***
27222361-C-A 25076214-C-A P1_g3 ***
27228987-C-T 25082840-C-T P1_g3 ***
27242342-C-T 25096195-C-T P1_g3 ***
27242795-G-A 25096648-G-A P1_g3 ***
27280288-GG-AA 25134141-GG-AA P1_g3 ***
27300819-C-T 25154672-C-T P1_g3 ***
27305660-A-G 25159513-A-G P1_g3 ***
27397919-C-T 25251772-C-T P1_g3 ***
27397928-C-T 25251781-C-T P1_g3 ***
27410376-T-C 25264229-T-C P1_g3 ***
27459997-C-T 25313850-C-T P1_Y2 ***
27461249-A-C 25315102-A-C P1_Y2 ***
27461606-T-G 25315459-T-G P1_Y2 ***
27471981-G-A 25325834-G-A P1_Y2 ***
27472028-G-T 25325881-G-T P1_Y2 ***
27472187-G-A 25326040-G-A P1_Y2 ***
27494426-C-T 25348279-C-T P1_Y2 ***
27538907-G-A 25392760-G-A P1_Y2 ***
27541368-A-G 25395221-A-G P1_Y2 ***
27542426-G-A 25396279-G-A P1_Y2 ***
27566627-A-C 25420480-A-C P1_Y2 ***
27572555-CTG-C 25426408-CTG-C P1_Y2 10×TG***
27574365-T-C 25428218-T-C P1_Y2 ***
27600557-C-T 25454410-C-T P1_Y2 ***
27632633-T-C 25486486-T-C P1_Y2 ***
27649970-C-T 25503823-C-T P1_Y2 ***
27651529-C-T 25505382-C-T P1_Y2 ***
27657415-T-A 25511268-T-A P1_Y2 ***
27660634-A-C 25514487-A-C P1_Y2 ***
27661126-C-T 25514979-C-T P1_Y2 ***
27665772-C-A 25519625-C-A P1_Y2 ***
27666039-G-A 25519892-G-A P1_Y2 ***
27666044-G-A 25519897-G-A P1_Y2 ***
27666066-G-A 25519919-G-A P1_Y2 ***
27737351-A-G 25591204-A-G P1_Y2 ***
27754201-T-C 25608054-T-C P1_Y2 ***
27767287-C-T 25621140-C-T P1_Y2 ***
27790547-C-A 25644400-C-A P1_Y2 ***
27801774-C-A 25655627-C-A P1_Y2 ***
27804257-GGAGTGG-AAAGTAA 25658110-GGAGTGG-AAAGTAA P1_Y2 ***
27804305-G-A 25658158-G-A P1_Y2 ***
27809840-G-A 25663693-G-A P1_Y2 ***
27837481-G-A 25691334-G-A P1_Y2 ***
27846923-G-T 25700776-G-T P1_Y2 ***
27866184-A-G 25720037-A-G P1_Y2 ***
27880284-T-C 25734137-T-C P1_Y2 ***
27922950-A-T 25776803-A-T P1_Y2 ***
27972276-A-G 25826129-A-G P1_Y2 ***
28051624-A-G 25905477-A-G P1_Y2 ***
28086316-A-C 25940169-A-C P1_Y2 ***
28091500-C-T 25945353-C-T P1_Y2 ***
28114947-TA-T 25968800-TA-T P1_b4 ***
28120118-T-C 25973971-T-C P1_b4 ***
28172366-C-T 26026219-C-T P1_b4 ***
28255069-TC-T 26108922-TC-T P1_b4 ***
28343345-G-T 26197198-G-T P1_gr2 ***
28346944-C-G 26200797-C-G P1_gr2 ***
28349544-T-G 26203397-T-G P1_gr2 ***
28350699-G-C 26204552-G-C P1_gr2 ***
28351176-A-G 26205029-A-G P1_gr2 ***
28359563-G-C 26213416-G-C P1_gr2 ***
28362754-C-A 26216607-C-A P1_gr2 ***
28362773-G-A 26216626-G-A P1_gr2 ***
28362784-A-T 26216637-A-T P1_gr2 ***
28362792-C-G 26216645-C-G P1_gr2 ***
28368913-A-G 26222766-A-G P1_gr2 ***
28381004-T-A 26234857-T-A P1_gr2 ***
28387262-A-G 26241115-A-G P1_gr2 ***
28392035-T-G 26245888-T-G P1_gr2 ***
28394930-T-G 26248783-T-G P1_gr2 ***
28397661-CATATT-C 26251514-CATATT-C P1_gr2 ***
28397707-G-A 26251560-G-A P1_gr2 ***
28399777-C-T 26253630-C-T P1_gr2 ***
28404098-C-T 26257951-C-T P1_gr2 ***
28404132-G-A 26257985-G-A P1_gr2 ***
28407463-C-T 26261316-C-T P1_gr2 ***
28414287-G-C 26268140-G-C P1_gr2 ***
28420879-C-T 26274732-C-T P1_gr2 ***
28431461-C-T 26285314-C-T P1_gr2 ***
28431471-C-T 26285324-C-T P1_gr2 ***
28431476-CTC-TTT 26285329-CTC-TTT P1_gr2 ***
28445585-G-A 26299438-G-A P1_gr2 ***
28449142-A-G 26302995-A-G P1_gr2 ***
28453258-G-A 26307111-G-A P1_gr2 ***
17278250-AGAAAGGAAGAAAGGAAGAAGAACGAAAGAAA-AGAAAGGAAGAAAGGAAGAAGAACGAAA,GAAAGGAAGAAAGGAAGAAGAAC 15166370-AGAAAGGAAGAAAGGAAGAAGAACGAAAGAAA-AGAAAGGAAGAAAGGAAGAAGAACGAAA,GAAAGGAAGAAAGGAAGAAGAAC ***
27567147-G-GA,GAA 25421000-G-GA,GAA P1_Y2 11×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.