Bonhomme
BigY2: 745652, YFull-BigY: YF12543, FGC2: W6G4M, YSEQ: 14354MDKA Birth: France
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 745652 |
---|---|---|---|---|---|---|---|---|
9544688-A-T | 9707079-A-T | IR3_Prx | A+ | |||||
10958358-C-G | A* | |||||||
6291173-C-T | 6423132-C-T | IR3_Dst | A* | |||||
6325692-T-A | 6457651-T-A | IR3_Dst | A* | |||||
22241385-C-A | 20079499-C-A | BY46595 | DYZ19 | A* | ||||
22291687-C-G | 20129801-C-G | DYZ19 | A* | |||||
2749038-C-T | 2880997-C-T | Y | Y | + | ||||
7856783-A-G | 7988742-A-G | BY68262 | Y | Y | + | |||
8489102-G-A | 8621061-G-A | Y | Y | + | ||||
8643076-G-A | 8775035-G-A | Y | Y | + | ||||
15710314-G-A | 13598434-G-A | Y | Y | + | ||||
16566465-G-A | 14454585-G-A | Y | Y | + | ||||
17152412-C-T | 15040532-C-T | Y | Y | + | ||||
23080473-T-C | 20918587-T-C | Y | Y | + | ||||
23740777-T-C | 21578891-T-C | BY147268 | + | |||||
15239-CA-C | + | |||||||
23234708-C-CTTCTTTCT | 21072822-C-CTTCTTTCT | 17×TTCT | * | |||||
15558431-G-GAGATAGAT | 13446551-G-GAGATAGAT | 17×AGAT | * | |||||
22233629-T-A | 20071743-T-A | BY213568 | DYZ19 | * | ||||
22233630-G-A | 20071744-G-A | BY213569 | DYZ19 | * | ||||
22233640-T-A | 20071754-T-A | BY12899 | DYZ19 | * | ||||
22233633-T-G | 20071747-T-G | DYZ19 | * | |||||
14807122-C-CA | 12695193-C-CA | * | ||||||
20337571-CTTTATTTATTTA-C | 18175685-CTTTATTTATTTA-C | P5_Dst | 7×TTTA | ** | ||||
13480795-G-A | 11325119-G-A | ** | ||||||
58985096-T-C | 56838949-T-C | ** | ||||||
21268938-C-A | 19107052-C-A | ** | ||||||
58842746-C-A | 56748125-G-T | ** | ||||||
58842769-T-C | 56748102-A-G | ** | ||||||
18890563-GGAAAGAAA-G | 16778683-GGAAAGAAA-G | 11×GAAA | ** | |||||
13715810-G-C | 11560134-G-C | BY16785 | ** | |||||
58842729-T-C | 56748142-A-G | ** | ||||||
13480794-A-T | 11325118-A-T | ** | ||||||
20333835-C-CA | 18171949-C-CA | P5_Dst | 24×A | ** | ||||
17926575-C-A | 15814695-C-A | ** | ||||||
18195999-GTA-G | 16084119-GTA-G | ** | ||||||
18354222-A-G | 16242342-A-G | P6_Prx | ** | |||||
8075905-C-A | 8207864-C-A | ** | ||||||
22353452-A-G | 20191566-A-G | BY160863 | DYZ19 | ** | ||||
13919208-C-CA | 11798502-C-CA | 17×A | ** | |||||
20943477-C-CTT | 18781591-C-CTT | P4_Dst | 12×TG | ** | ||||
26260636-A-AT | 24114489-A-AT | P1_Y1 | 11×T | ** | ||||
58985109-C-A | 56838962-C-A | ** | ||||||
17569226-G-GA | 15457346-G-GA | 25×A | ** | |||||
18354220-G-A | 16242340-G-A | P6_Prx | ** | |||||
17928102-G-GT | 15816222-G-GT | 9×T | ** | |||||
58985056-T-C | 56838909-T-C | ** | ||||||
58985060-G-C | 56838913-G-C | ** | ||||||
16364058-CTATATATATATA-C | 14252178-CTATATATATATA-C | 27×TA | ** | |||||
59004640-G-A | 56858493-G-A | ** | ||||||
6765637-T-G | 6897596-T-G | ** | ||||||
17085721-C-CT | 14973841-C-CT | 20×T | ** | |||||
22317910-A-C | 20156024-A-C | DYZ19 | ** | |||||
28797880-G-T | 26651733-G-T | ** | ||||||
19146569-CT-C | 17034689-CT-C | 28×T | ** | |||||
10845680-C-T | ** | |||||||
10987158-T-TA | ** | |||||||
10037818-G-A | 10200209-G-A | ** | ||||||
10037822-G-T | 10200213-G-T | ** | ||||||
10037826-TAATG-T | 10200217-TAATG-T | ** | ||||||
10763076-C-G | ** | |||||||
11025294-A-C | ** | |||||||
9540127-GT-G | 9702518-GT-G | IR3_Prx | ** | |||||
10927861-G-C | ** | |||||||
10927874-C-A | ** | |||||||
10808433-C-G | ** | |||||||
10808451-T-C | ** | |||||||
11019411-C-T | ** | |||||||
17090883-C-A | 14979003-C-A | ** | ||||||
10654485-T-G | ** | |||||||
10654487-C-G | ** | |||||||
10973903-C-A | ** | |||||||
10648108-A-G | ** | |||||||
11025279-A-C | ** | |||||||
11025284-A-T | ** | |||||||
11025298-C-A | ** | |||||||
11025333-G-T | ** | |||||||
11025365-C-T | ** | |||||||
10969966-T-C | ** | |||||||
10969969-C-CCACCT | ** | |||||||
10887245-CCGAAA-C | ** | |||||||
10887274-C-A | ** | |||||||
10887279-A-AG | ** | |||||||
10887281-TC-T | ** | |||||||
10887288-G-A | ** | |||||||
10887289-T-C | ** | |||||||
10887294-C-A | ** | |||||||
10887298-A-G | ** | |||||||
10887314-A-G | ** | |||||||
10972891-T-A | ** | |||||||
10779526-T-C | ** | |||||||
10779553-T-A | ** | |||||||
10779561-C-T | ** | |||||||
10784333-T-C | ** | |||||||
10895775-C-T | ** | |||||||
7986079-GA-G | 8118038-GA-G | 8×A | ** | |||||
7221478-CTATT-C | 7353437-CTATT-C | 4×TATT | ** | |||||
10795092-C-A | ** | |||||||
22317932-A-G | 20156046-A-G | DYZ19 | ** | |||||
19272142-CAAA-C | 17160262-CAAA-C | 18×A | ** | |||||
10770553-CACTGCACTCA-C | ** | |||||||
10895773-T-C | ** | |||||||
10895786-A-T | ** | |||||||
10973932-C-A | ** | |||||||
10973938-C-T | ** | |||||||
10761196-G-A | ** | |||||||
10761214-A-C | ** | |||||||
10827945-A-C | ** | |||||||
10827951-T-A | ** | |||||||
10827956-A-C | ** | |||||||
10827962-T-C | ** | |||||||
10827971-C-T | ** | |||||||
10827977-T-C | ** | |||||||
10866114-C-A | ** | |||||||
10907776-T-A | ** | |||||||
19052414-CAAA-C | 16940534-CAAA-C | 24×A | ** | |||||
10866087-A-C | ** | |||||||
6915-T-A | ** | |||||||
10956679-C-G | ** | |||||||
10956700-ATTGCG-T | ** | |||||||
10956708-A-C | ** | |||||||
9601586-CTTTT-C | 9763977-CTTTT-C | IR3_Prx | 16×T | ** | ||||
10767878-T-G | ** | |||||||
10767888-CTACAA-C | ** | |||||||
10767898-T-C | ** | |||||||
10767905-T-G | ** | |||||||
10767920-C-A | ** | |||||||
10767922-A-T | FT430343 | ** | ||||||
10767932-A-T | ** | |||||||
10767951-C-G | ** | |||||||
10767956-C-G | ** | |||||||
10796699-T-C | ** | |||||||
10836497-T-C | ** | |||||||
13421679-C-CTT | 11266003-C-CTT | 14×T | ** | |||||
13466417-G-T | 11310741-G-T | ** | ||||||
11030777-C-G | ** | |||||||
17929416-G-T | 15817536-G-T | ** | ||||||
22166535-CTTT-C | 20004649-CTTT-C | 29×T | ** | |||||
10796663-A-G | ** | |||||||
10824244-A-C | ** | |||||||
16602638-C-CTT | 14490758-C-CTT | 15×T | ** | |||||
10866104-T-G | ** | |||||||
10843913-C-A | ** | |||||||
10827906-A-T | ** | |||||||
10827907-T-C | ** | |||||||
10827925-C-T | FT433006 | ** | ||||||
10827930-CA-C | ** | |||||||
10827943-T-A | ** | |||||||
10682573-A-T | ** | |||||||
5853532-G-T | 5985491-G-T | ** | ||||||
10828572-T-A | ** | |||||||
56748159-G-C | ** | |||||||
10657655-A-C | ** | |||||||
10657659-C-A | ** | |||||||
10909738-T-G | ** | |||||||
11029767-C-A | ** | |||||||
11029768-T-A | ** | |||||||
11029771-C-A | ** | |||||||
11029779-A-C | ** | |||||||
11029786-C-T | ** | |||||||
10755344-T-G | ** | |||||||
10919143-T-C | ** | |||||||
10919160-C-T | ** | |||||||
10924391-T-A | ** | |||||||
19706137-T-C | 17594257-T-C | P5_Prx | ** | |||||
9531238-GT-G | 9693629-GT-G | IR3_Prx | ** | |||||
10907675-G-A | ** | |||||||
15011714-C-A | 12899802-C-A | ** | ||||||
10969260-C-A | ** | |||||||
15971773-C-A | 13859893-C-A | ** | ||||||
10763080-C-A | ** | |||||||
10787188-C-G | ** | |||||||
10964239-T-C | ** | |||||||
27733768-G-T | 25587621-G-T | P1_Y2 | ** | |||||
13705477-AATGGAATGGAATG-A | 11549801-AATGGAATGGAATG-A | ** | ||||||
10755584-T-A | ** | |||||||
10755591-A-G | ** | |||||||
10755594-T-C | ** | |||||||
10755613-A-G | ** | |||||||
10755614-C-A | ** | |||||||
10796654-T-A | ** | |||||||
10796679-T-G | ** | |||||||
10986350-C-A | ** | |||||||
10755609-A-C | ** | |||||||
10691396-C-G | ** | |||||||
16305923-TCAAA-T | 14194043-TCAAA-T | ** | ||||||
10909705-C-A | ** | |||||||
13468255-C-A | 11312579-C-A | ** | ||||||
10947380-T-C | ** | |||||||
28797866-T-C | 26651719-T-C | ** | ||||||
10964227-C-T | ** | |||||||
10964231-CT-C | ** | |||||||
10964243-A-T | ** | |||||||
10964248-A-T | ** | |||||||
10964254-T-A | ** | |||||||
13315642-C-A | 11159966-C-A | ** | ||||||
17046714-AG-A | 14934834-AG-A | ** | ||||||
2812777-AT-A | 2944736-AT-A | 30×T | ** | |||||
20027998-TTA-T | 17916118-TTA-T | P5_Prx | ** | |||||
56748137-G-C | ** | |||||||
56748150-T-C | ** | |||||||
15931748-C-A | 13819868-C-A | ** | ||||||
18982584-AAAG-A | 16870704-AAAG-A | ** | ||||||
15049947-A-C | 12938038-A-C | ** | ||||||
10986824-T-C | ** | |||||||
20771716-A-AC | 18609830-A-AC | P4_Prx | ** | |||||
10872167-T-A | ** | |||||||
10988641-A-G | ** | |||||||
10778995-C-G | ** | |||||||
10050759-G-T | 10213150-G-T | ** | ||||||
10907704-T-A | ** | |||||||
17920925-G-C | 15809045-G-C | ** | ||||||
17920936-C-T | 15809056-C-T | ** | ||||||
24293027-T-G | 22146880-T-G | P3_t1 | ** | |||||
10987936-T-C | ** | |||||||
10987940-C-G | ** | |||||||
10987941-T-C | ** | |||||||
10987946-A-C | ** | |||||||
10655149-C-A | ** | |||||||
56861903-C-A | ** | |||||||
26054122-G-GTA | 23907975-G-GTA | P1_Y1 | ** | |||||
16305904-G-A | 14194024-G-A | ** | ||||||
13480801-T-A | 11325125-T-A | ** | ||||||
16181268-C-A | 14069388-C-A | ** | ||||||
10982272-C-G | ** | |||||||
10919123-A-G | ** | |||||||
16305880-C-G | 14194000-C-G | ** | ||||||
10779058-A-C | ** | |||||||
14343928-C-A | 12223223-C-A | FT55885 | ** | |||||
19066053-C-A | 16954173-C-A | ** | ||||||
10759579-G-A | ** | |||||||
11025350-G-T | ** | |||||||
5937278-ATT-A | 6069237-ATT-A | ** | ||||||
14047362-C-A | 11926656-C-A | ** | ||||||
22884945-AT-A | 20723059-AT-A | 9×T | ** | |||||
10766691-C-A | ** | |||||||
16297389-C-A | 14185509-C-A | ** | ||||||
10988628-T-A | ** | |||||||
24258792-A-C | 22112645-A-C | P3_b1 | ** | |||||
25466538-AAG-A | 23320391-AAG-A | P2_r2 | ** | |||||
11025312-G-A | ** | |||||||
11025337-C-G | FT439995 | ** | ||||||
11025345-G-C | ** | |||||||
11025388-C-TT | ** | |||||||
10834415-G-GCATTC | ** | |||||||
10779003-C-A | ** | |||||||
10872192-A-T | ** | |||||||
11009260-C-A | ** | |||||||
10866048-C-G | ** | |||||||
10992962-A-T | ** | |||||||
14695992-CAAA-C | 12584058-CAAA-C | 30×A | ** | |||||
9899527-CA-C | 10061918-CA-C | ** | ||||||
21427696-C-A | 19265810-C-A | ** | ||||||
10909688-G-C | ** | |||||||
10909692-C-T | ** | |||||||
31122-A-T | ** | |||||||
31130-T-G | FGCLR37 | ** | ||||||
4937054-C-A | 5069013-C-A | ** | ||||||
21468042-C-A | 19306156-C-A | ** | ||||||
13963921-A-G | 11843215-A-G | ** | ||||||
5335940-C-A | 5467899-C-A | ** | ||||||
13468228-A-G | 11312552-A-G | ** | ||||||
4088424-C-A | 4220383-C-A | ** | ||||||
10763090-C-CCAATA | ** | |||||||
10763106-C-T | ** | |||||||
26415654-G-T | 24269507-G-T | P1_Y1 | ** | |||||
17318206-C-A | 15206326-C-A | ** | ||||||
19416486-C-A | 17304606-C-A | ** | ||||||
7076612-CAAAA-C | 7208571-CAAAA-C | 29×A | ** | |||||
56748123-G-T | ** | |||||||
18767186-CTT-C | 16655306-CTT-C | 16×T | ** | |||||
31141-G-T | ** | |||||||
19663384-C-A | 17551504-C-A | P5_Prx | ** | |||||
9564514-TG-T | 9726905-TG-T | IR3_Prx | ** | |||||
16707465-G-T | 14595585-G-T | 8×A | ** | |||||
22317911-T-C | 20156025-T-C | DYZ19 | ** | |||||
6952-T-G | ** | |||||||
10666669-C-A | ** | |||||||
10964806-C-G | ** | |||||||
10653095-A-T | ** | |||||||
10947390-G-T | ** | |||||||
9977433-C-A | 10139824-C-A | ** | ||||||
19479306-C-A | 17367426-C-A | ** | ||||||
20337607-A-G | 18175721-A-G | P5_Dst | ** | |||||
9117726-G-T | ** | |||||||
19575811-C-A | 17463931-C-A | P5_Prx | ** | |||||
8078407-G-T | 8210366-G-T | ** | ||||||
24115135-C-A | 21968988-C-A | P3_b1 | ** | |||||
56858317-A-C | ** | |||||||
22317897-G-A | 20156011-G-A | DYZ19 | ** | |||||
22253110-T-C | 20091224-T-C | DYZ19 | ** | |||||
56838954-A-C | ** | |||||||
14563060-C-A | 12451260-C-A | ** | ||||||
10870522-C-A | ** | |||||||
13324806-T-G | 11169130-T-G | ** | ||||||
10657560-C-A | ** | |||||||
13596361-C-A | 11440685-C-A | ** | ||||||
56839008-G-T | ** | |||||||
28816049-T-A | 26669902-T-A | ** | ||||||
14981779-C-CAAA | 12869855-C-CAAA | 14×A | ** | |||||
24618870-T-TC | 22472723-T-TC | P3_t2 | ** | |||||
15081268-C-A | 12969358-C-A | ** | ||||||
19770038-G-T | 17658158-G-T | P5_Prx | ** | |||||
21503218-C-A | 19341332-C-A | ** | ||||||
2970049-C-A | 3102008-C-A | ** | ||||||
4357626-G-T | 4489585-G-T | ** | ||||||
11650894-A-G | ** | |||||||
11650905-A-T | ** | |||||||
11650911-C-T | ** | |||||||
11650932-G-A | ** | |||||||
3550648-C-T | 3682607-C-T | ** | ||||||
7041782-C-A | 7173741-C-A | ** | ||||||
2683329-T-G | 2815288-T-G | ** | ||||||
19706129-C-CACT | 17594249-C-CACT | P5_Prx | ** | |||||
22836702-C-A | 20674816-C-A | ** | ||||||
10924413-A-T | ** | |||||||
10924394-T-C | ** | |||||||
17464966-C-A | 15353086-C-A | ** | ||||||
56838929-C-A | ** | |||||||
23848424-G-T | 21686538-G-T | ** | ||||||
9665554-CACACACA-C | 9827945-CACACACA-C | IR3_Prx | ** | |||||
14555058-A-T | 12443259-A-T | ** | ||||||
13943194-C-A | 11822488-C-A | ** | ||||||
5524697-C-A | 5656656-C-A | ** | ||||||
10982279-C-T | ** | |||||||
17480054-C-A | 15368174-C-A | ** | ||||||
56705936-G-A | ** | |||||||
9373212-C-A | 9535603-C-A | ** | ||||||
18518324-C-A | 16406444-C-A | P6_Dst | ** | |||||
23565867-G-T | 21403981-G-T | ** | ||||||
15321326-GTGT-G | 13209444-GTGT-G | ** | ||||||
10872200-G-T | ** | |||||||
14068510-AT-A | 11947804-AT-A | ** | ||||||
10760257-T-A | ** | |||||||
15788067-C-A | 13676187-C-A | ** | ||||||
10795331-C-A | ** | |||||||
10968249-C-A | ** | |||||||
13468202-A-G | 11312526-A-G | ** | ||||||
11033147-C-A | ** | |||||||
5865370-C-A | 5997329-C-A | ** | ||||||
9700668-C-A | 9863059-C-A | IR3_Prx | ** | |||||
16305886-C-T | 14194006-C-T | ** | ||||||
11018250-C-G | ** | |||||||
28081883-A-AAT | 25935736-A-AAT | P1_Y2 | 8×AC | ** | ||||
16720392-G-T | 14608512-G-T | ** | ||||||
13728822-T-A | 11573146-T-A | ** | ||||||
23355399-C-A | 21193513-C-A | ** | ||||||
17831074-C-A | 15719194-C-A | ** | ||||||
14926397-A-G | 12814462-A-G | ** | ||||||
14270441-C-A | 12149735-C-A | ** | ||||||
10982255-T-C | ** | |||||||
15049936-AT-A | 12938027-AT-A | ** | ||||||
16305906-C-T | 14194026-C-T | ** | ||||||
16214537-G-T | 14102657-G-T | ** | ||||||
13315088-T-G | 11159412-T-G | ** | ||||||
10662003-C-A | ** | |||||||
13313584-A-C | 11157908-A-C | ** | ||||||
3107240-C-G | 3239199-C-G | ** | ||||||
3158879-A-C | 3290838-A-C | ** | ||||||
3377156-G-T | 3509115-G-T | ** | ||||||
3420687-G-T | 3552646-G-T | ** | ||||||
3941958-G-T | 4073917-G-T | ** | ||||||
4271324-G-T | 4403283-G-T | ** | ||||||
4510246-C-A | 4642205-C-A | ** | ||||||
4605208-C-A | 4737167-C-A | ** | ||||||
4653999-G-T | 4785958-G-T | ** | ||||||
4792274-G-T | 4924233-G-T | ** | ||||||
4815607-G-T | 4947566-G-T | ** | ||||||
4960004-C-A | 5091963-C-A | ** | ||||||
5017646-C-G | 5149605-C-G | ** | ||||||
5059482-T-A | 5191441-T-A | ** | ||||||
5059509-T-A | 5191468-T-A | ** | ||||||
5059521-A-C | 5191480-A-C | ** | ||||||
5059526-A-C | 5191485-A-C | ** | ||||||
5155733-C-A | 5287692-C-A | ** | ||||||
5214786-C-A | 5346745-C-A | ** | ||||||
5296416-T-C | 5428375-T-C | ** | ||||||
5334575-A-AT | 5466534-A-AT | 10×T | ** | |||||
5363659-C-A | 5495618-C-A | ** | ||||||
5393363-G-A | 5525322-G-A | ** | ||||||
5443996-A-T | 5575955-A-T | ** | ||||||
5536063-G-T | 5668022-G-T | ** | ||||||
5904852-G-A | 6036811-G-A | ** | ||||||
6117966-T-A | 6249925-T-A | ** | ||||||
6313893-A-T | 6445852-A-T | IR3_Dst | ** | |||||
6313923-C-T | 6445882-C-T | IR3_Dst | ** | |||||
6313950-C-G | 6445909-C-G | IR3_Dst | ** | |||||
6663975-G-T | 6795934-G-T | ** | ||||||
6882329-T-C | 7014288-T-C | ** | ||||||
7040965-G-T | 7172924-G-T | FT308548 | ** | |||||
7080869-G-T | 7212828-G-T | ** | ||||||
7167004-C-G | 7298963-C-G | ** | ||||||
7210188-G-T | 7342147-G-T | ** | ||||||
7257416-C-A | 7389375-C-A | ** | ||||||
7257431-C-A | 7389390-C-A | ** | ||||||
7298604-A-C | 7430563-A-C | ** | ||||||
7374320-A-C | 7506279-A-C | ** | ||||||
7383725-T-G | 7515684-T-G | ** | ||||||
7420731-A-C | 7552690-A-C | ** | ||||||
8075058-T-G | 8207017-T-G | ** | ||||||
8080509-C-A | 8212468-C-A | ** | ||||||
8091720-A-C | 8223679-A-C | ** | ||||||
8112394-C-A | 8244353-C-A | ** | ||||||
8333698-TCTTCTC-T | 8465657-TCTTCTC-T | ** | ||||||
8807475-G-A | 8939434-G-A | ** | ||||||
9030122-G-T | 9192513-G-T | ** | ||||||
9030253-G-T | 9192644-G-T | ** | ||||||
9385166-T-G | 9547557-T-G | ** | ||||||
10037758-T-G | 10200149-T-G | ** | ||||||
10666911-T-G | ** | |||||||
10750557-C-A | ** | |||||||
10759625-T-C | ** | |||||||
10760269-C-G | ** | |||||||
10762591-C-A | ** | |||||||
10779024-TCCTCA-T | ** | |||||||
10799768-T-G | ** | |||||||
10809562-TC-T | ** | |||||||
10822212-GTTCCA-G | ** | |||||||
10835537-C-G | ** | |||||||
10835539-T-G | ** | |||||||
10866062-C-CAAATT | ** | |||||||
10866123-A-ACTCAT | ** | |||||||
10906322-G-T | ** | |||||||
10973314-C-A | ** | |||||||
10974383-C-A | ** | |||||||
10983340-C-A | ** | |||||||
11000411-TCC-T | ** | |||||||
11018247-C-A | ** | |||||||
11033153-C-A | ** | |||||||
11035222-C-A | ** | |||||||
11035259-C-G | ** | |||||||
11035360-T-G | ** | |||||||
13227039-A-C | 11071363-A-C | ** | ||||||
13243574-C-A | 11087898-C-A | ** | ||||||
13255822-T-GGG | 11100146-T-GGG | ** | ||||||
13302165-T-C | 11146489-T-C | ** | ||||||
13324794-T-G | 11169118-T-G | ** | ||||||
13453395-ATTCCTTTCC-A | 11297719-ATTCCTTTCC-A | ** | ||||||
13453406-AT-A | 11297730-AT-A | ** | ||||||
13514566-C-A | 11358890-C-A | ** | ||||||
13697873-G-T | 11542197-G-T | ** | ||||||
13705491-GAA-G | 11549815-GAA-G | ** | ||||||
13715802-C-A | 11560126-C-A | ** | ||||||
13728749-A-G | 11573073-A-G | ** | ||||||
13728775-G-T | 11573099-G-T | ** | ||||||
13728788-C-A | 11573112-C-A | ** | ||||||
13728807-T-A | 11573131-T-A | ** | ||||||
11650971-G-C | ** | |||||||
11652056-C-T | ** | |||||||
11666049-G-A | ** | |||||||
13859245-G-T | 11738539-G-T | FT107566 | ** | |||||
13910195-C-A | 11789489-C-A | ** | ||||||
14230052-C-A | 12109346-C-A | ** | ||||||
14470437-T-G | 12349706-T-G | ** | ||||||
14506895-A-C | 12395100-A-C | ** | ||||||
14620337-C-A | 12508535-C-A | ** | ||||||
14660382-G-T | 12548447-G-T | ** | ||||||
15128127-T-TG | 13016214-T-TG | ** | ||||||
15446801-C-A | 13334921-C-A | ** | ||||||
15797992-C-A | 13686112-C-A | ** | ||||||
15798111-T-G | 13686231-T-G | ** | ||||||
15852762-C-A | 13740882-C-A | ** | ||||||
16004628-T-C | 13892748-T-C | ** | ||||||
16676721-A-C | 14564841-A-C | ** | ||||||
16701973-A-C | 14590093-A-C | ** | ||||||
16707437-G-T | 14595557-G-T | ** | ||||||
16999101-T-G | 14887221-T-G | ** | ||||||
17264987-G-T | 15153107-G-T | ** | ||||||
17730515-T-A | 15618635-T-A | ** | ||||||
17737793-A-C | 15625913-A-C | ** | ||||||
18249986-TAAAAAAAAAATTATA-T | 16138106-TAAAAAAAAAATTATA-T | 10×A | ** | |||||
18411041-C-A | 16299161-C-A | P6_Gap | ** | |||||
18928874-A-C | 16816994-A-C | ** | ||||||
19075492-T-A | 16963612-T-A | ** | ||||||
19137583-A-T | 17025703-A-T | ** | ||||||
19244835-C-A | 17132955-C-A | ** | ||||||
19479285-G-A | 17367405-G-A | ** | ||||||
19512641-A-T | 17400761-A-T | ** | ||||||
19770052-C-A | 17658172-C-A | P5_Prx | ** | |||||
19770082-G-T | 17658202-G-T | P5_Prx | ** | |||||
19874966-C-A | 17763086-C-A | P5_Prx | ** | |||||
19875002-G-T | 17763122-G-T | P5_Prx | ** | |||||
19930070-T-G | 17818190-T-G | P5_Prx | ** | |||||
19930089-C-G | 17818209-C-G | P5_Prx | ** | |||||
19930136-C-A | 17818256-C-A | P5_Prx | ** | |||||
19948478-A-T | 17836598-A-T | P5_Prx | ** | |||||
19948490-A-T | 17836610-A-T | P5_Prx | ** | |||||
20707100-A-C | 18545214-A-C | P4_Prx | ** | |||||
20771722-A-AC | 18609836-A-AC | P4_Prx | ** | |||||
20869243-T-TA | 18707357-T-TA | P4_Dst | ** | |||||
20974912-A-C | 18813026-A-C | P4_Dst | ** | |||||
21107788-G-A | 18945902-G-A | ** | ||||||
21503322-C-T | 19341436-C-T | FT194070 | ** | |||||
21738522-A-C | 19576636-A-C | ** | ||||||
21738524-A-C | 19576638-A-C | ** | ||||||
21832667-C-A | 19670781-C-A | ** | ||||||
21968687-A-T | 19806801-A-T | ** | ||||||
22134183-T-A | 19972297-T-A | ** | ||||||
22134187-T-G | 19972301-T-G | ** | ||||||
22134221-A-C | 19972335-A-C | ** | ||||||
22352547-C-A | 20190661-C-A | DYZ19 | ** | |||||
22520644-C-A | 20358758-C-A | ** | ||||||
24259842-A-AC | 22113695-A-AC | P3_b1 | ** | |||||
24643247-C-A | 22497100-C-A | P3_t2 | ** | |||||
25466576-G-A | 23320429-G-A | P2_r2 | ** | |||||
26008854-C-A | 23862707-C-A | P1_Y1 | ** | |||||
26921845-C-G | 24775698-C-G | P1_r3 | ** | |||||
27815745-G-T | 25669598-G-T | P1_Y2 | ** | |||||
28229244-G-T | 26083097-G-T | P1_b4 | ** | |||||
28515414-C-A | 26369267-C-A | ** | ||||||
28608429-T-C | 26462282-T-C | ** | ||||||
28800793-T-A | 26654646-T-A | ** | ||||||
56705926-G-C | ** | |||||||
56734853-T-A | ** | |||||||
56838927-T-A | ** | |||||||
56838930-A-T | ** | |||||||
56838948-C-G | ** | |||||||
56838972-G-T | ** | |||||||
56838974-A-G | ** | |||||||
56838975-A-G | ** | |||||||
56838989-T-G | ** | |||||||
56841420-T-A | ** | |||||||
56861472-A-T | ** | |||||||
56876589-T-A | ** | |||||||
31146-T-A | ** | |||||||
58974243-A-T | 56828096-A-T | *** | ||||||
13459116-GATTCC-G | 11303440-GATTCC-G | 10×ATTCC | *** | |||||
13467906-T-A | 11312230-T-A | *** | ||||||
13467921-G-T | 11312245-G-T | *** | ||||||
58974241-A-C | 56828094-A-C | *** | ||||||
13457901-T-TATTCC | 11302225-T-TATTCC | 7×ATTCC | *** | |||||
2892542-ATTTTTT-A | 3024501-ATTTTTT-A | 18×T | *** | |||||
23327296-C-CT | 21165410-C-CT | 11×T | *** | |||||
9777507-C-CA | 9939898-C-CA | 17×A | *** | |||||
7009187-C-CT | 7141146-C-CT | 19×T | *** | |||||
19520845-TAAA-T | 17408965-TAAA-T | 21×A | *** | |||||
10657577-C-T | FT233380 | *** | ||||||
56834454-ATTCCATTCCCTTCCA-A,ATTCCATTCCCTTCCC | *** | |||||||
24381401-AAT-A,AAA | 22235254-AAT-A,AAA | *** | ||||||
10657297-T-C | *** | |||||||
10934845-T-C | *** | |||||||
10895822-A-T | *** | |||||||
8562865-CAAA-C | 8694824-CAAA-C | 17×A | *** | |||||
23471038-CAA-C,CA | 21309152-CAA-C,CA | 19×A | *** | |||||
10967552-C-G | *** | |||||||
13480425-C-A | 11324749-C-A | A16177 | *** | |||||
13446534-C-T | 11290858-C-T | *** | ||||||
10851060-C-T | *** | |||||||
56827547-CTTTCC-CATGCG,G | *** | |||||||
10892567-C-T | *** | |||||||
10926629-A-C | *** | |||||||
10926598-A-T | *** | |||||||
6978301-C-T | 7110260-C-T | *** | ||||||
10780639-C-T | *** | |||||||
10764570-C-CAATCT | *** | |||||||
10764572-T-TTTCAC | *** | |||||||
19143125-ATTTT-A | 17031245-ATTTT-A | 17×T | *** | |||||
10911698-G-T | *** | |||||||
10744289-T-A | *** | |||||||
10851089-C-G | *** | |||||||
10892562-C-T | *** | |||||||
10911735-A-T | *** | |||||||
10761168-C-T | *** | |||||||
17923876-GTTTT-G | 15811996-GTTTT-G | 18×T | *** | |||||
13453226-A-C | 11297550-A-C | 10×TCCAT | *** | |||||
10765721-T-C | *** | |||||||
10971937-C-A | *** | |||||||
10667019-C-A | *** | |||||||
13704988-A-T | 11549312-A-T | *** | ||||||
5073579-C-A | 5205538-C-A | *** | ||||||
10934847-C-A,G | *** | |||||||
10888014-T-G | *** | |||||||
8725422-C-A | 8857381-C-A | *** | ||||||
22537809-G-T | 20375923-G-T | *** | ||||||
4101061-C-A | 4233020-C-A | *** | ||||||
11004114-G-C | *** | |||||||
4103405-A-AT | 4235364-A-AT | 10×T | *** | |||||
56835842-C-T | *** | |||||||
11014389-C-A | *** | |||||||
10801678-ATTC-A,ATGC | *** | |||||||
8725419-C-A | 8857378-C-A | *** | ||||||
10958386-T-C | *** | |||||||
10657576-A-T | *** | |||||||
56833707-C-T | *** | |||||||
10657565-C-A | *** | |||||||
10949949-C-A | *** | |||||||
7142783-C-A | 7274742-C-A | *** | ||||||
6359661-AAG-A | 6491620-AAG-A | *** | ||||||
15368938-C-A | 13257058-C-A | *** | ||||||
10657572-C-T | *** | |||||||
10746959-A-G,T | *** | |||||||
18271018-GT-G,GTT | 16159138-GT-G,GTT | 17×T | *** | |||||
4357653-CT-C | 4489612-CT-C | *** | ||||||
6773490-T-C | 6905449-T-C | *** | ||||||
7363157-TA-T,TAA | 7495116-TA-T,TAA | 18×A | *** | |||||
10657582-C-T | *** | |||||||
13869857-TGGAATGGAAG-T,TGGAATGGAAT | 11749151-TGGAATGGAAG-T,TGGAATGGAAT | *** | ||||||
14936854-G-GGTTT | 12824919-G-GGTTT | 6×GTTT | *** | |||||
15468678-CAAAAA-C,CAAAAAA | 13356798-CAAAAA-C,CAAAAAA | 23×A | *** | |||||
17441175-AATATATATATATATAT-A,AATAT | 15329295-AATATATATATATATAT-A,AATAT | 20×AT | *** | |||||
28800479-TGGG-T | 26654332-TGGG-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.