Atherton
BigY2: N63183MDKA Birth: England
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 N63183 |
---|---|---|---|---|---|---|---|---|
9538929-G-A | 9701320-G-A | IR3_Prx | A+ | |||||
24305272-C-CA | 22159125-C-CA | P3_t1 | 21×A | A* | ||||
16478359-C-CA | 14366479-C-CA | 18×A | A* | |||||
28816494-G-A | 26670347-G-A | A* | ||||||
26223427-A-G | 24077280-A-G | P1_Y1 | A* | |||||
21873566-C-CA | 19711680-C-CA | 14×A | A* | |||||
28810433-T-A | 26664286-T-A | BY48978 | A* | |||||
10657328-T-C | A* | |||||||
13695070-T-C | 11539394-T-C | A* | ||||||
10896304-A-T | FT178493 | A* | ||||||
28817195-T-G | 26671048-T-G | A* | ||||||
10759791-A-T | BY83766 | A* | ||||||
10759794-C-T | BY83767 | A* | ||||||
28810524-G-T | 26664377-G-T | A* | ||||||
28807417-G-A | 26661270-G-A | A* | ||||||
28817951-T-C | 26671804-T-C | A* | ||||||
28815523-A-G | 26669376-A-G | A* | ||||||
28816923-G-A | 26670776-G-A | A* | ||||||
28817115-G-A | 26670968-G-A | A* | ||||||
14958837-T-C | 12846912-T-C | Y92636 | Y | Y | + | |||
7868975-GAA-G | 8000934-GAA-G | 16×A | *** | |||||
13847060-A-G | 11726354-A-G | ** | ||||||
15232238-G-T | 13120324-G-T | CTS3863 | ** | |||||
15623176-AT-A | 13511296-AT-A | 11×T | ** | |||||
16590649-T-C | 14478769-T-C | ** | ||||||
16590683-A-C | 14478803-A-C | ** | ||||||
22335808-C-T | 20173922-C-T | DYZ19 | ** | |||||
20998349-G-A | 18836463-G-A | P4_Dst | ** | |||||
24618792-C-G | 22472645-C-G | P3_t2 | ** | |||||
22292130-T-C | 20130244-T-C | DYZ19 | ** | |||||
13705418-C-T | 11549742-C-T | ** | ||||||
9371457-CATATAT-C | 9533848-CATATAT-C | 22×AT | ** | |||||
15912133-C-A | 13800253-C-A | ** | ||||||
58903246-C-G | 56687625-G-C | ** | ||||||
22335815-T-C | 20173929-T-C | DYZ19 | ** | |||||
22335816-A-T | 20173930-A-T | DYZ19 | ** | |||||
20511001-G-T | 18349115-G-T | P5_Dst | ** | |||||
7009187-CTTTTTTT-C | 7141146-CTTTTTTT-C | 19×T | ** | |||||
19233033-T-C | 17121153-T-C | BY15306 | BY41918 | ** | ||||
21946433-GA-G | 19784547-GA-G | 11×A | ** | |||||
13461047-G-A | 11305371-G-A | ** | ||||||
21146240-CT-C | 18984354-CT-C | 10×T | ** | |||||
58848168-T-C | 56742703-A-G | ** | ||||||
9414607-A-T | 9576998-A-T | ** | ||||||
22804535-CAA-C | 20642649-CAA-C | 12×A | ** | |||||
7084333-C-A | 7216292-C-A | ** | ||||||
58981655-T-A | 56835508-T-A | ** | ||||||
22188682-AACACAC-A | 20026796-AACACAC-A | 23×AC | ** | |||||
10880695-T-C | ** | |||||||
10940306-C-G | ** | |||||||
10940323-C-G | ** | |||||||
10661638-A-C | ** | |||||||
10661640-G-A | ** | |||||||
10877820-T-C | ** | |||||||
10760345-C-A | ** | |||||||
10776011-A-G | ** | |||||||
10828696-C-T | ** | |||||||
13488844-G-GGC | 11333168-G-GGC | ** | ||||||
10868066-C-T | ** | |||||||
11005264-C-A | ** | |||||||
10973955-T-A | ** | |||||||
22100855-C-T | 19938969-C-T | ** | ||||||
10787665-G-T | ** | |||||||
10809022-G-C | ** | |||||||
10769384-C-T | ** | |||||||
13461035-T-C | 11305359-T-C | ** | ||||||
2758842-CAAAAA-C | 2890801-CAAAAA-C | 19×A | ** | |||||
5869982-C-CT | 6001941-C-CT | 11×T | ** | |||||
10942719-C-A | ** | |||||||
11026894-T-C | ** | |||||||
10973927-C-A | ** | |||||||
10973930-C-A | ** | |||||||
8389677-G-A | 8521636-G-A | ** | ||||||
10839617-C-A | ** | |||||||
10964751-C-G | ** | |||||||
6752156-TA-T | 6884115-TA-T | ** | ||||||
4374808-C-A | 4506767-C-A | ** | ||||||
10755386-C-A | ** | |||||||
10866477-A-C | ** | |||||||
24582353-T-TC | 22436206-T-TC | P3_t2 | ** | |||||
13476138-A-G | 11320462-A-G | ** | ||||||
13476150-C-G | 11320474-C-G | ** | ||||||
21846516-C-A | 19684630-C-A | ** | ||||||
9181065-G-T | 9343456-G-T | ** | ||||||
10795842-A-G | ** | |||||||
10795848-T-A | ** | |||||||
10795859-T-G | ** | |||||||
10795866-C-T | ** | |||||||
10795875-C-G | ** | |||||||
10795876-C-A | ** | |||||||
10935611-C-T | ** | |||||||
11031290-G-C | ** | |||||||
10925467-T-G | ** | |||||||
16146490-AG-A | 14034610-AG-A | P8_Dst | ** | |||||
10747818-A-C | ** | |||||||
10787729-C-T | ** | |||||||
10787730-A-G | ** | |||||||
10787738-T-C | ** | |||||||
7154797-C-CAA | 7286756-C-CAA | 18×A | ** | |||||
11031313-T-TTCCCC | ** | |||||||
26018406-TG-T | 23872259-TG-T | P1_Y1 | ** | |||||
26204676-T-A | 24058529-T-A | P1_Y1 | ** | |||||
10682580-T-G | ** | |||||||
11675327-G-C | ** | |||||||
10797721-C-G | ** | |||||||
10877816-T-A | ** | |||||||
17770250-T-C | 15658370-T-C | ** | ||||||
11027714-A-G | ** | |||||||
11027720-T-A | ** | |||||||
11031354-T-G | ** | |||||||
13476120-G-T | 11320444-G-T | ** | ||||||
13476117-C-A | 11320441-C-A | ** | ||||||
13476122-A-T | 11320446-A-T | ** | ||||||
10924672-G-C | ** | |||||||
10924677-G-C | ** | |||||||
10924685-T-C | ** | |||||||
10924690-T-C | ** | |||||||
10924708-C-T | ** | |||||||
10924740-T-G | ** | |||||||
13487735-G-T | 11332059-G-T | ** | ||||||
13487743-T-TC | 11332067-T-TC | ** | ||||||
13487760-C-A | 11332084-C-A | ** | ||||||
20850637-GT-G | 18688751-GT-G | P4_Dst | ** | |||||
11026899-C-T | ** | |||||||
10882112-T-C | ** | |||||||
10927886-T-C | ** | |||||||
11031300-C-G | ** | |||||||
10808995-T-C | ** | |||||||
3804760-A-T | 3936719-A-T | ** | ||||||
11003655-T-C | FT393304 | ** | ||||||
11031349-T-A | ** | |||||||
11031359-C-T | ** | |||||||
11031359-C-CCCT | ** | |||||||
11017665-C-A | ** | |||||||
11017621-T-C | ** | |||||||
11017622-T-C | ** | |||||||
11017632-T-C | ** | |||||||
11017635-A-G | ** | |||||||
11017648-C-G | ** | |||||||
11017658-C-T | ** | |||||||
11017671-C-G | ** | |||||||
11017674-A-T | ** | |||||||
11017677-C-G | ** | |||||||
11017693-T-A | ** | |||||||
11017699-G-C | ** | |||||||
14530879-C-T | 12419080-C-T | FT239586 | ** | |||||
10760422-T-C | ** | |||||||
10993157-C-A | ** | |||||||
11025887-A-C | ** | |||||||
11025875-C-T | FT440020 | ** | ||||||
11025878-T-C | ** | |||||||
11025917-C-G | ** | |||||||
11025939-A-C | ** | |||||||
14144008-C-A | 12023302-C-A | ** | ||||||
10801041-C-A | ** | |||||||
10880700-T-C | ** | |||||||
11024667-C-T | ** | |||||||
9544152-TG-T | 9706543-TG-T | IR3_Prx | ** | |||||
18447621-G-GTTT | 16335741-G-GTTT | P6_Dst | 18×T | ** | ||||
10880684-T-A | ** | |||||||
10935549-C-G | ** | |||||||
13935589-C-A | 11814883-C-A | ** | ||||||
10794022-C-A | ** | |||||||
10784835-C-T | ** | |||||||
10784877-T-A | ** | |||||||
6310855-AC-A | 6442814-AC-A | IR3_Dst | ** | |||||
10683636-A-C | ** | |||||||
13491026-T-G | 11335350-T-G | ** | ||||||
10799622-TTCC-T | ** | |||||||
10885076-C-A | ** | |||||||
14757397-C-A | 12645466-C-A | ** | ||||||
13935546-G-GT | 11814840-G-GT | 9×T | ** | |||||
16420745-C-A | 14308865-C-A | ** | ||||||
27398549-G-T | 25252402-G-T | P1_g3 | ** | |||||
11675375-T-C | ** | |||||||
11675379-A-G | ** | |||||||
11675385-T-C | ** | |||||||
21166806-C-A | 19004920-C-A | ** | ||||||
11017704-T-A | ** | |||||||
10809017-C-G | ** | |||||||
10794259-CAATCCACTCT-C | ** | |||||||
21923932-T-C | 19762046-T-C | ** | ||||||
14196332-CAA-C | 12075626-CAA-C | 11×A | ** | |||||
21923915-T-C | 19762029-T-C | ** | ||||||
17821825-G-T | 15709945-G-T | 17×A | ** | |||||
10935551-C-G | ** | |||||||
10935574-C-A | ** | |||||||
10935592-C-T | ** | |||||||
10935597-C-CACT | ** | |||||||
10935599-T-TACTCCTC | ** | |||||||
4898342-C-A | 5030301-C-A | ** | ||||||
10895873-T-TTAAAC | ** | |||||||
10927889-C-T | ** | |||||||
10927891-T-C | ** | |||||||
4388666-G-T | 4520625-G-T | ** | ||||||
17098867-C-A | 14986987-C-A | ** | ||||||
10801045-T-C | ** | |||||||
10648119-T-C | FT91485 | ** | ||||||
18966064-T-G | 16854184-T-G | ** | ||||||
10780782-G-T | ** | |||||||
10780791-A-T | ** | |||||||
10780802-C-G | ** | |||||||
10780842-A-T | ** | |||||||
10780845-T-C | ** | |||||||
10780847-C-G | ** | |||||||
10780855-A-C | ** | |||||||
10780869-T-C | ** | |||||||
10780879-G-C | ** | |||||||
10747843-G-C | ** | |||||||
10780789-C-T | ** | |||||||
10780821-ACTACT-A | ** | |||||||
10780834-C-T | ** | |||||||
23120661-C-T | 20958775-C-T | ** | ||||||
10967722-GCATTC-G | ** | |||||||
21556943-GTC-G | 19395057-GTC-G | ** | ||||||
13227319-T-G | 11071643-T-G | ** | ||||||
10776066-G-C | ** | |||||||
10776092-C-CTAAAT | ** | |||||||
19187446-CTTTTT-C | 17075566-CTTTTT-C | 34×T | ** | |||||
7428035-C-A | 7559994-C-A | ** | ||||||
7076280-C-A | 7208239-C-A | ** | ||||||
14776945-T-G | 12665014-T-G | ** | ||||||
22100886-A-G | 19939000-A-G | ** | ||||||
10927871-C-A | ** | |||||||
13928226-C-A | 11807520-C-A | ** | ||||||
18984028-C-A | 16872148-C-A | ** | ||||||
17584157-G-TT | 15472277-G-TT | ** | ||||||
10767648-G-A | ** | |||||||
11022125-C-T | ** | |||||||
10747841-A-C | ** | |||||||
8170358-C-A | 8302317-C-A | ** | ||||||
19075439-AAAAC-A | 16963559-AAAAC-A | 4×AAAC | ** | |||||
21167327-G-C | 19005441-G-C | ** | ||||||
17693702-GTTTT-G | 15581822-GTTTT-G | 15×T | ** | |||||
14776956-C-T | 12665025-C-T | ** | ||||||
13625176-C-A | 11469500-C-A | ** | ||||||
22189211-C-A | 20027325-C-A | ** | ||||||
8073349-C-A | 8205308-C-A | ** | ||||||
11027769-A-T | ** | |||||||
4282202-C-A | 4414161-C-A | ** | ||||||
18443023-C-A | 16331143-C-A | P6_Dst | ** | |||||
10778941-T-C | ** | |||||||
28506077-C-A | 26359930-C-A | ** | ||||||
10691509-T-A | ** | |||||||
16295110-C-A | 14183230-C-A | ** | ||||||
23316097-G-A | 21154211-G-A | ** | ||||||
8389733-G-A | 8521692-G-A | ** | ||||||
10956726-C-T | ** | |||||||
20473624-ATG-A | 18311738-ATG-A | P5_Dst | ** | |||||
14356505-C-A | 12235800-C-A | ** | ||||||
22747679-AT-A | 20585793-AT-A | 10×T | ** | |||||
8080657-C-A | 8212616-C-A | ** | ||||||
8142831-G-A | 8274790-G-A | ** | ||||||
8142836-T-A | 8274795-T-A | ** | ||||||
16035693-C-A | 13923813-C-A | ** | ||||||
22353448-C-A | 20191562-C-A | DYZ19 | ** | |||||
4123668-C-A | 4255627-C-A | ** | ||||||
8142844-G-A | 8274803-G-A | ** | ||||||
11027729-A-G | ** | |||||||
22095677-C-A | 19933791-C-A | ** | ||||||
19079234-C-A | 16967354-C-A | 19×T | ** | |||||
3284135-C-A | 3416094-C-A | ** | ||||||
10868987-C-G | ** | |||||||
10882076-ACCCC-A | ** | |||||||
10668840-C-A | ** | |||||||
10761663-C-A | ** | |||||||
17770252-C-T | 15658372-C-T | ** | ||||||
10800987-T-C | ** | |||||||
56687594-T-C | ** | |||||||
56687597-A-T | ** | |||||||
56687603-C-T | ** | |||||||
19529314-C-A | 17417434-C-A | ** | ||||||
23899408-GT-G | 21737522-GT-G | ** | ||||||
14191323-C-T | 12070617-C-T | ** | ||||||
14191330-T-C | 12070624-T-C | ** | ||||||
15477960-C-T | 13366080-C-T | ** | ||||||
11021160-T-C | FT92244 | ** | ||||||
22008379-C-A | 19846493-C-A | ** | ||||||
10769391-A-C | ** | |||||||
10769405-C-CG | ** | |||||||
10769407-TTC-T | ** | |||||||
6888582-C-A | 7020541-C-A | ** | ||||||
10821834-T-C | ** | |||||||
22100875-C-T | 19938989-C-T | ** | ||||||
18961640-G-T | 16849760-G-T | ** | ||||||
5108007-C-A | 5239966-C-A | ** | ||||||
10800996-A-T | ** | |||||||
14444844-C-A | 12324117-C-A | ** | ||||||
21096201-C-T | 18934315-C-T | ** | ||||||
6780624-A-C | 6912583-A-C | ** | ||||||
7311125-C-A | 7443084-C-A | ** | ||||||
9820568-C-CA | 9982959-C-CA | ** | ||||||
5926991-G-T | 6058950-G-T | ** | ||||||
8001912-C-A | 8133871-C-A | ** | ||||||
17633292-C-A | 15521412-C-A | ** | ||||||
10801024-C-A | ** | |||||||
10927861-G-TCCAT | ** | |||||||
10692074-T-A | ** | |||||||
16682696-G-A | 14570816-G-A | ** | ||||||
13474659-C-A | 11318983-C-A | ** | ||||||
56839055-T-C | ** | |||||||
2860180-A-G | 2992139-A-G | ** | ||||||
14073463-C-A | 11952757-C-A | ** | ||||||
10880324-T-TGGAAA | ** | |||||||
10974769-A-T | ** | |||||||
10831602-TCTGCA-T | ** | |||||||
27714463-C-T | 25568316-C-T | P1_Y2 | ** | |||||
10937299-C-A | ** | |||||||
10979553-C-A | ** | |||||||
15202400-GCA-G | 13090486-GCA-G | ** | ||||||
10944957-C-A | ** | |||||||
28091461-CA-C | 25945314-CA-C | P1_Y2 | ** | |||||
10882083-TC-T | ** | |||||||
10747836-T-C | ** | |||||||
15457889-C-A | 13346009-C-A | ** | ||||||
10866478-A-ATTGTG | ** | |||||||
19697727-C-A | 17585847-C-A | P5_Prx | ** | |||||
18738202-C-A | 16626322-C-A | ** | ||||||
2684838-C-A | 2816797-C-A | ** | ||||||
16526505-G-T | 14414625-G-T | ** | ||||||
9820583-A-T | 9982974-A-T | ** | ||||||
10809044-A-T | ** | |||||||
17480206-C-A | 15368326-C-A | ** | ||||||
10817624-C-A | ** | |||||||
10781720-C-T | ** | |||||||
21043054-C-A | 18881168-C-A | ** | ||||||
56823242-G-T | ** | |||||||
13725952-A-G | 11570276-A-G | ** | ||||||
23184676-G-T | 21022790-G-T | ** | ||||||
22060499-C-A | 19898613-C-A | ** | ||||||
10747826-T-C | ** | |||||||
15363887-C-T | 13252007-C-T | ** | ||||||
17870987-C-A | 15759107-C-A | ** | ||||||
11027746-A-T | ** | |||||||
18989743-C-A | 16877863-C-A | ** | ||||||
2688623-T-TA | 2820582-T-TA | ** | ||||||
10796131-C-T | ** | |||||||
14776949-G-A | 12665018-G-A | ** | ||||||
28598562-C-A | 26452415-C-A | ** | ||||||
14294342-G-A | 12173636-G-A | 13×A | ** | |||||
2833212-C-A | 2965171-C-A | ** | ||||||
19037964-C-A | 16926084-C-A | ** | ||||||
11010676-T-C | ** | |||||||
10766114-C-A | ** | |||||||
18728721-GAAAA-G | 16616841-GAAAA-G | 16×A | ** | |||||
15967454-C-A | 13855574-C-A | ** | ||||||
14055613-C-A | 11934907-C-A | ** | ||||||
10808982-C-G | ** | |||||||
10809034-A-ATTCTC | ** | |||||||
6314871-G-T | 6446830-G-T | IR3_Dst | ** | |||||
14849081-A-G | 12737147-A-G | ** | ||||||
7181752-C-A | 7313711-C-A | ** | ||||||
6808056-T-C | 6940015-T-C | ** | ||||||
3229070-C-A | 3361029-C-A | FGC3269 | ** | |||||
23126837-C-A | 20964951-C-A | ** | ||||||
7111785-C-A | 7243744-C-A | ** | ||||||
3346134-C-A | 3478093-C-A | ** | ||||||
15358651-G-A | 13246770-G-A | FT281921 | ** | |||||
15585021-C-A | 13473141-C-A | ** | ||||||
4416822-G-C | 4548781-G-C | ** | ||||||
9094312-C-A | 9256703-C-A | ** | ||||||
26228660-A-C | 24082513-A-C | P1_Y1 | ** | |||||
10691503-C-T | ** | |||||||
15848853-T-C | 13736973-T-C | ** | ||||||
23431156-C-A | 21269270-C-A | ** | ||||||
13945267-T-G | 11824561-T-G | ** | ||||||
13296132-C-A | 11140456-C-A | ** | ||||||
10949075-C-G | ** | |||||||
6808051-A-G | 6940010-A-G | ** | ||||||
28707267-C-A | 26561120-C-A | ** | ||||||
10692087-T-G | ** | |||||||
11008106-C-A | ** | |||||||
21602891-C-A | 19441005-C-A | ** | ||||||
20420691-C-A | 18258805-C-A | P5_Dst | ** | |||||
8831198-A-G | 8963157-A-G | ** | ||||||
17755384-TAAAAA-T | 15643504-TAAAAA-T | 17×A | ** | |||||
24631266-G-GTT | 22485119-G-GTT | P3_t2 | ** | |||||
7252330-T-C | 7384289-T-C | ** | ||||||
18194007-G-GA | 16082127-G-GA | 9×A | ** | |||||
10889087-G-A | ** | |||||||
5166485-G-T | 5298444-G-T | ** | ||||||
14191322-G-A | 12070616-G-A | ** | ||||||
13453330-A-T | 11297654-A-T | ** | ||||||
10934811-C-G | ** | |||||||
10933444-T-A | ** | |||||||
11015220-C-A | ** | |||||||
21201343-C-A | 19039457-C-A | ** | ||||||
10868978-C-A | ** | |||||||
10868991-T-C | ** | |||||||
10778878-C-A | ** | |||||||
16682677-C-A | 14570797-C-A | ** | ||||||
10933455-A-C | ** | |||||||
10795111-G-T | ** | |||||||
8061737-T-G | 8193696-T-G | ** | ||||||
11027717-G-A | ** | |||||||
3012592-A-G | 3144551-A-G | ** | ||||||
3644982-G-A | 3776941-G-A | ** | ||||||
3682455-G-T | 3814414-G-T | ** | ||||||
3850246-G-T | 3982205-G-T | ** | ||||||
3906096-G-T | 4038055-G-T | ** | ||||||
4313823-G-T | 4445782-G-T | ** | ||||||
4416823-G-C | 4548782-G-C | ** | ||||||
4937063-G-T | 5069022-G-T | ** | ||||||
5112042-C-A | 5244001-C-A | ** | ||||||
5184208-C-A | 5316167-C-A | ** | ||||||
5220406-G-T | 5352365-G-T | FGC76830 | ** | |||||
5409748-CTTTCTT-C | 5541707-CTTTCTT-C | ** | ||||||
5409756-CTT-C | 5541715-CTT-C | ** | ||||||
5501735-C-T | 5633694-C-T | FT211638 | ** | |||||
5501744-C-T | 5633703-C-T | ** | ||||||
5501750-C-T | 5633709-C-T | ** | ||||||
6768987-C-A | 6900946-C-A | ** | ||||||
6780618-T-C | 6912577-T-C | ** | ||||||
6780623-G-A | 6912582-G-A | ** | ||||||
6780720-A-T | 6912679-A-T | ** | ||||||
6808052-A-G | 6940011-A-G | ** | ||||||
6808057-A-G | 6940016-A-G | ** | ||||||
6930108-C-A | 7062067-C-A | ** | ||||||
7113796-C-A | 7245755-C-A | ** | ||||||
7160986-C-T | 7292945-C-T | ** | ||||||
7252333-C-T | 7384292-C-T | ** | ||||||
7252432-T-A | 7384391-T-A | ** | ||||||
7314570-C-CA | 7446529-C-CA | ** | ||||||
7314575-T-C | 7446534-T-C | ** | ||||||
7314576-A-C | 7446535-A-C | ** | ||||||
7314623-T-G | 7446582-T-G | ** | ||||||
7338983-C-A | 7470942-C-A | FT19149 | ** | |||||
7339731-A-G | 7471690-A-G | ** | ||||||
7425266-T-A | 7557225-T-A | ** | ||||||
7469406-A-T | 7601365-A-T | IR1_L | ** | |||||
7717846-T-C | 7849805-T-C | ** | ||||||
8100611-C-A | 8232570-C-A | ** | ||||||
8389686-C-T | 8521645-C-T | ** | ||||||
8669854-T-G | 8801813-T-G | ** | ||||||
8694268-T-G | 8826227-T-G | ** | ||||||
8831191-G-A | 8963150-G-A | ** | ||||||
9411707-G-T | 9574098-G-T | ** | ||||||
9414603-T-C | 9576994-T-C | ** | ||||||
9966162-C-A | 10128553-C-A | ** | ||||||
9973796-C-A | 10136187-C-A | ** | ||||||
10010545-T-C | 10172936-T-C | ** | ||||||
10662160-T-A | ** | |||||||
10683629-C-CAATTA | ** | |||||||
10689244-CTTCCA-C | ** | |||||||
10747816-T-C | ** | |||||||
10747833-C-T | ** | |||||||
10764651-C-A | ** | |||||||
10778932-TTTC-T | ** | |||||||
10784867-A-ATTCC | ** | |||||||
10784870-T-TC | ** | |||||||
10800985-C-T | ** | |||||||
10836073-T-C | ** | |||||||
10837230-C-A | ** | |||||||
10837305-C-A | ** | |||||||
10852710-A-C | ** | |||||||
10864284-C-A | ** | |||||||
10884697-C-A | ** | |||||||
10889298-C-CCCTGCACTCGGCTTG | ** | |||||||
10889322-C-A | ** | |||||||
10895628-C-A | ** | |||||||
10925043-C-A | ** | |||||||
10928704-C-A | ** | |||||||
10948498-A-T | ** | |||||||
10948498-ATCGAC-A | ** | |||||||
10954251-A-C | ** | |||||||
10954251-A-AACTCC | ** | |||||||
10987924-C-T | ** | |||||||
11006947-A-G | ** | |||||||
11010685-A-G | ** | |||||||
11025207-C-T | ** | |||||||
11027742-T-C | ** | |||||||
11027745-C-T | ** | |||||||
13225647-C-A | 11069971-C-A | ** | ||||||
13238345-T-G | 11082669-T-G | ** | ||||||
13453334-C-CACTCGAGTTG | 11297658-C-CACTCGAGTTG | ** | ||||||
13545423-C-A | 11389747-C-A | ** | ||||||
13617479-C-T | 11461803-C-T | ** | ||||||
11652000-C-T | ** | |||||||
11652016-G-A | FT450276 | ** | ||||||
11652024-A-T | ** | |||||||
11652025-G-A | ** | |||||||
11652028-T-A | ** | |||||||
11673762-A-G | ** | |||||||
13885918-T-C | 11765212-T-C | ** | ||||||
13963956-C-A | 11843250-C-A | ** | ||||||
14006813-C-A | 11886107-C-A | ** | ||||||
14149184-T-G | 12028478-T-G | ** | ||||||
14203403-C-A | 12082697-C-A | ** | ||||||
14366621-CCACTTCCTT-C | 12245916-CCACTTCCTT-C | ** | ||||||
14445407-C-A | 12324680-C-A | ** | ||||||
14515620-G-T | 12403821-G-T | ** | ||||||
14539338-T-G | 12427539-T-G | ** | ||||||
14627183-C-T | 12515251-C-T | ** | ||||||
14776896-G-A | 12664965-G-A | ** | ||||||
14776923-CAAAAAAA-C | 12664992-CAAAAAAA-C | 15×A | ** | |||||
14788496-C-A | 12676567-C-A | ** | ||||||
14925933-G-C | 12813998-G-C | ** | ||||||
14925934-AG-T | 12813999-AG-T | ** | ||||||
14967206-T-G | 12855281-T-G | ** | ||||||
15173593-C-G | 13061679-C-G | ** | ||||||
15202398-G-GCA | 13090484-G-GCA | ** | ||||||
15258388-G-T | 13146472-G-T | ** | ||||||
15376435-G-A | 13264555-G-A | FT64171 | ** | |||||
15394068-C-A | 13282188-C-A | ** | ||||||
15430582-T-A | 13318702-T-A | ** | ||||||
15733878-TCAAAA-T | 13621998-TCAAAA-T | ** | ||||||
15745046-A-C | 13633166-A-C | ** | ||||||
16063244-T-G | 13951364-T-G | ** | ||||||
16065306-G-T | 13953426-G-T | ** | ||||||
16070779-A-C | 13958899-A-C | ** | ||||||
16184321-T-TC | 14072441-T-TC | ** | ||||||
16245020-C-A | 14133140-C-A | ** | ||||||
16277777-G-A | 14165897-G-A | ** | ||||||
16425502-A-T | 14313622-A-T | ** | ||||||
16554815-C-A | 14442935-C-A | ** | ||||||
16938303-T-C | 14826423-T-C | ** | ||||||
17160994-C-T | 15049114-C-T | ** | ||||||
17160995-A-G | 15049115-A-G | ** | ||||||
17160999-T-A | 15049119-T-A | ** | ||||||
17161002-C-G | 15049122-C-G | ** | ||||||
17161012-T-C | 15049132-T-C | ** | ||||||
17770251-G-A | 15658371-G-A | ** | ||||||
18194048-C-A | 16082168-C-A | ** | ||||||
18215757-C-T | 16103877-C-T | ** | ||||||
18412592-T-C | 16300712-T-C | P6_Gap | ** | |||||
18558149-C-A | 16446269-C-A | ** | ||||||
18819614-T-C | 16707734-T-C | ** | ||||||
18838602-A-G | 16726722-A-G | ** | ||||||
18838649-T-C | 16726769-T-C | ** | ||||||
18844090-T-A | 16732210-T-A | ** | ||||||
18856219-G-A | 16744339-G-A | ** | ||||||
18982579-AAAAAAAAG-A | 16870699-AAAAAAAAG-A | ** | ||||||
18996526-T-C | 16884646-T-C | ** | ||||||
19206649-A-C | 17094769-A-C | ** | ||||||
19404449-T-G | 17292569-T-G | ** | ||||||
19429921-A-G | 17318041-A-G | ** | ||||||
19588251-A-T | 17476371-A-T | P5_Prx | ** | |||||
19588290-A-T | 17476410-A-T | P5_Prx | ** | |||||
19588293-A-T | 17476413-A-T | P5_Prx | ** | |||||
19681475-A-C | 17569595-A-C | P5_Prx | ** | |||||
20409547-G-T | 18247661-G-T | P5_Dst | ** | |||||
20502528-A-C | 18340642-A-C | P5_Dst | ** | |||||
20801681-C-T | 18639795-C-T | P4_Prx | ** | |||||
20801682-T-TC | 18639796-T-TC | P4_Prx | ** | |||||
20990449-A-T | 18828563-A-T | P4_Dst | ** | |||||
21002449-G-T | 18840563-G-T | P4_Dst | ** | |||||
21096202-A-G | 18934316-A-G | ** | ||||||
21096212-C-T | 18934326-C-T | ** | ||||||
21096218-G-C | 18934332-G-C | ** | ||||||
21096224-A-G | 18934338-A-G | ** | ||||||
21096231-A-T | 18934345-A-T | ** | ||||||
21153407-G-A | 18991521-G-A | ** | ||||||
21153415-A-G | 18991529-A-G | ** | ||||||
21167325-C-T | 19005439-C-T | ** | ||||||
21225063-A-G | 19063177-A-G | ** | ||||||
21602869-A-C | 19440983-A-C | ** | ||||||
21602885-A-G | 19440999-A-G | ** | ||||||
21624668-C-T | 19462782-C-T | ** | ||||||
21624669-A-G | 19462783-A-G | ** | ||||||
21874931-A-G | 19713045-A-G | ** | ||||||
21923912-C-G | 19762026-C-G | ** | ||||||
21923917-C-T | 19762031-C-T | ** | ||||||
21923922-TG-T | 19762036-TG-T | ** | ||||||
22077474-C-T | 19915588-C-T | ** | ||||||
22292108-A-AGG | 20130222-A-AGG | DYZ19 | ** | |||||
22292126-T-A | 20130240-T-A | DYZ19 | ** | |||||
22292155-C-G | 20130269-C-G | DYZ19 | ** | |||||
22335873-G-T | 20173987-G-T | DYZ19 | ** | |||||
23158891-C-A | 20997005-C-A | ** | ||||||
23885403-T-C | 21723517-T-C | ** | ||||||
24280988-C-G | 22134841-C-G | P3_t1 | ** | |||||
24523620-A-C | 22377473-A-C | ** | ||||||
24618802-T-G | 22472655-T-G | P3_t2 | ** | |||||
24618804-GT-G | 22472657-GT-G | P3_t2 | ** | |||||
26391595-A-C | 24245448-A-C | P1_Y1 | ** | |||||
27714444-G-C | 25568297-G-C | P1_Y2 | ** | |||||
27714446-C-T | 25568299-C-T | P1_Y2 | ** | |||||
27714449-CA-C | 25568302-CA-C | P1_Y2 | ** | |||||
28529524-C-A | 26383377-C-A | ** | ||||||
28581928-C-A | 26435781-C-A | ** | ||||||
28618384-C-A | 26472237-C-A | ** | ||||||
56842274-G-A | ** | |||||||
56844204-C-T | ** | |||||||
56870343-C-T | ** | |||||||
16564397-C-T | 14452517-C-T | M6191 | *** | |||||
18108457-CTT-C | 15996577-CTT-C | 13×T | *** | |||||
6780870-C-CAA | 6912829-C-CAA | 26×A | *** | |||||
15750502-C-CTT | 13638622-C-CTT | 18×T | *** | |||||
18384490-CAAA-C | 16272610-CAAA-C | P6_Gap | 19×A | *** | ||||
2776495-AT-A | 2908454-AT-A | 10×T | *** | |||||
3790878-GTATATATA-G | 3922837-GTATATATA-G | 21×TA | *** | |||||
16345600-GA-G | 14233720-GA-G | 11×A | *** | |||||
13489887-A-T | 11334211-A-T | *** | ||||||
58979456-G-A,T | 56833309-G-A,T | *** | ||||||
21499860-G-GT | 19337974-G-GT | 9×T | *** | |||||
7142696-G-A | 7274655-G-A | *** | ||||||
58972780-C-T | 56826633-C-T | *** | ||||||
10755389-C-T | *** | |||||||
10764556-A-G | *** | |||||||
10662212-C-CATTG | *** | |||||||
10662216-C-A | *** | |||||||
10851049-T-C | *** | |||||||
13464382-A-T | 11308706-A-T | *** | ||||||
56836132-G-A,ACTCCA | *** | |||||||
10801687-C-CTTCT | *** | |||||||
10887978-A-AGTGAG | *** | |||||||
10926570-A-T | *** | |||||||
10926608-G-A | *** | |||||||
17419439-ATTT-A | 15307559-ATTT-A | 25×T | *** | |||||
10801704-T-C | *** | |||||||
15397193-GA-G | 13285313-GA-G | 9×A | *** | |||||
56685628-A-G | *** | |||||||
10926569-C-A,T | *** | |||||||
10770666-T-A | *** | |||||||
13236519-C-A | 11080843-C-A | *** | ||||||
10776520-TCCATTC-T | *** | |||||||
13489470-C-A | 11333794-C-A | *** | ||||||
10958371-T-C | *** | |||||||
10967537-C-G | *** | |||||||
10666958-C-G | *** | |||||||
10849645-C-G | *** | |||||||
10958359-C-A | *** | |||||||
9968339-GTT-G,GT | 10130730-GTT-G,GT | 15×T | *** | |||||
12943228-CAAA-C | 16×A | *** | ||||||
11001495-G-A,T | *** | |||||||
3148521-C-T | 3280480-C-T | *** | ||||||
13464408-C-T | 11308732-C-T | *** | ||||||
10789332-T-A | *** | |||||||
56830312-C-A | *** | |||||||
56830313-CAT-C | *** | |||||||
56830535-CATTCTGCTGAATTCCATTGC-C,CATTCCATTGAATTCCATTGT | *** | |||||||
10785267-C-T | *** | |||||||
13478388-G-A | 11322712-G-A | *** | ||||||
20816924-CA-C,CAA | 18655038-CA-C,CAA | P4_Gap | 22×A | *** | ||||
22229662-A-T | 20067776-A-T | DYZ19 | *** | |||||
10801691-C-T | *** | |||||||
13488865-G-C | 11333189-G-C | *** | ||||||
13488904-G-C | 11333228-G-C | *** | ||||||
13479048-A-T | 11323372-A-T | *** | ||||||
13461852-G-T | 11306176-G-T | *** | ||||||
10807225-C-G | *** | |||||||
7444134-AT-A | 7576093-AT-A | 8×T | *** | |||||
15174874-C-A | 13062960-C-A | *** | ||||||
10796673-A-C,T | *** | |||||||
14594216-C-A | 12482416-C-A | *** | ||||||
10987903-C-G | *** | |||||||
19247970-C-A | 17136090-C-A | *** | ||||||
23440975-C-A | 21279089-C-A | *** | ||||||
13467813-A-G | 11312137-A-G | *** | ||||||
24381211-G-C | 22235064-G-C | *** | ||||||
13461890-A-C | 11306214-A-C | *** | ||||||
15206018-TA-T | 13094104-TA-T | *** | ||||||
13461897-A-T | 11306221-A-T | *** | ||||||
13461903-G-C | 11306227-G-C | *** | ||||||
13483315-C-A,G | 11327639-C-A,G | *** | ||||||
14527402-C-A | 12415603-C-A | *** | ||||||
21992963-TAAA-T,TAA | 19831077-TAAA-T,TAA | 23×A | *** | |||||
13461856-G-A | 11306180-G-A | *** | ||||||
13489467-G-A | 11333791-G-A | *** | ||||||
22864929-C-A | 20703043-C-A | *** | ||||||
13461873-C-G | 11306197-C-G | *** | ||||||
6834115-CTT-C | 6966074-CTT-C | 11×T | *** | |||||
11025045-CTCCAT-C | *** | |||||||
14563905-C-A | 12452105-C-A | *** | ||||||
10987915-A-T | *** | |||||||
19022242-C-A | 16910362-C-A | *** | ||||||
13489490-C-G | 11333814-C-G | *** | ||||||
23350820-T-A | 21188934-T-A | *** | ||||||
18752889-G-T | 16641009-G-T | *** | ||||||
2728068-T-C | 2860027-T-C | *** | ||||||
2773590-CA-C | 2905549-CA-C | *** | ||||||
5967804-C-T | 6099763-C-T | *** | ||||||
6759318-C-A | 6891277-C-A | *** | ||||||
7247686-T-TAA | 7379645-T-TAA | 11×A | *** | |||||
9397996-C-T | 9560387-C-T | *** | ||||||
9836888-GTTTTTTT-G,GTTTTTTTT | 9999279-GTTTTTTT-G,GTTTTTTTT | 20×T | *** | |||||
10021914-C-A | 10184305-C-A | *** | ||||||
10750588-C-A | *** | |||||||
10816446-C-A | *** | |||||||
11003713-A-ATTAC,C | *** | |||||||
13330830-C-A | 11175154-C-A | *** | ||||||
14370737-G-A | 12250033-G-A | *** | ||||||
14757475-C-A | 12645544-C-A | *** | ||||||
15097867-CA-C | 12985955-CA-C | *** | ||||||
15097873-T-A | 12985961-T-A | *** | ||||||
15189967-C-A | 13078053-C-A | *** | ||||||
15768840-C-A | 13656960-C-A | *** | ||||||
16302567-C-A | 14190687-C-A | *** | ||||||
16424570-T-A | 14312690-T-A | *** | ||||||
18725155-C-T | 16613275-C-T | *** | ||||||
18737480-C-T | 16625600-C-T | *** | ||||||
21251998-C-A | 19090112-C-A | *** | ||||||
22845012-TAA-T | 20683126-TAA-T | 10×A | *** | |||||
22867516-G-A | 20705630-G-A | *** | ||||||
23350789-A-G | 21188903-A-G | *** | ||||||
23350811-A-G | 21188925-A-G | *** | ||||||
23776898-C-A | 21615012-C-A | *** | ||||||
27823689-C-A | 25677542-C-A | P1_Y2 | *** | |||||
28760232-C-A | 26614085-C-A | *** | ||||||
28772314-C-A | 26626167-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.