Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > ZS312 > Z262 > BY32616 > BY55853

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
IN21073
16102591-T-C 13990711-T-C P8_Prx A+
6336658-G-A 6468617-G-A IR3_Dst A*
6289365-T-TA 6421324-T-TA IR3_Dst 9×AA*
26006125-C-G 23859978-C-G P1_Y1 A*
20794920-C-G 18633034-C-G P4_Prx A*
22313119-G-T 20151233-G-T DYZ19 A*
14503148-G-GA 12391353-G-GA +
21881918-A-G 19720032-A-G BY208382 YY+
7382983-C-A 7514942-C-A BY205821 YY+
6400654-T-G 6532613-T-G BY205629 +
22444673-T-C 20282787-T-C BY219457 DYZ19 +
22445132-G-A 20283246-G-A DYZ19 +
14880019-C-G 12768089-C-G BY206835 YY+
8577787-G-A 8709746-G-A BY206212 YY+
21169027-G-A 19007141-G-A BY208155 YY+
2820955-C-T 2952914-C-T BY205531 YY+
23315829-C-T 21153943-C-T BY208807 YY+
19349229-G-A 17237349-G-A BY208049 YY+
7889712-G-A 8021671-G-A BY201539 YY+
17739375-C-T 15627495-C-T BY207610 YY+
9398519-A-C 9560910-A-C F1539 YY+
15873730-CT-C 13761850-CT-C 9×T+
15457882-T-C 13346002-T-C BY206990 YY+
9398593-G-C 9560984-G-C M2774 ZS4028 YY+
6971657-G-A 7103616-G-A BY205729 YY+
7147695-C-T 7279654-C-T M1532 CTS1017 YY+
14224011-G-A 12103305-G-A BY206657 YY+
6952258-C-T 7084217-C-T BY205724 YY+
15311339-C-T 13199444-C-T BY206948 YY+
6650457-T-C 6782416-T-C BY205642 YY+
17181058-C-G 15069178-C-G BY207448 YY+
13325675-A-AGT 11169999-A-AGT 11×GT*
8699713-C-T 8831672-C-T **
8077621-T-A 8209580-T-A **
8972450-C-T 9134841-C-T **
8972483-A-C 9134874-A-C **
8972498-G-A 9134889-G-A **
8074149-T-G 8206108-T-G **
8972502-T-C 9134893-T-C **
8090749-A-G 8222708-A-G **
9117906-G-T **
25122-T-A **
8972527-AC-A 9134918-AC-A **
10781838-C-A **
10833876-C-A **
10833874-T-A **
10832060-C-A **
10828483-C-A **
10822985-C-A **
10814729-C-A **
10808781-C-A **
10804782-T-A **
10789617-C-A **
10783329-T-A **
10774278-TCTATTTCATTCC-T **
8972547-A-G 9134938-A-G **
10770951-C-A **
10769331-C-A **
10768703-CAAT-C **
10768699-ATT-A **
10757037-C-A **
10749132-C-A **
10676806-C-A **
10676773-C-A **
9773576-C-A 9935967-C-A **
8983400-T-A 9145791-T-A **
9519810-C-CTT 9682201-C-CTT **
6403750-A-C 6535709-A-C **
7414194-C-T 7546153-C-T **
21438255-T-C 19276369-T-C **
3389194-G-A 3521153-G-A **
3176255-G-T 3308214-G-T **
3065757-G-T 3197716-G-T **
3051295-C-T 3183254-C-T **
2791497-G-T 2923456-G-T **
25815261-T-A 23669114-T-A P1_b3 **
10979632-C-A **
28619283-GA-G 26473136-GA-G 9×A**
10655883-C-A **
3828206-C-A 3960165-C-A **
14224229-G-GAA 12103523-G-GAA 13×A**
28497027-C-A 26350880-C-A **
14561775-C-A 12449976-C-A **
6028432-C-A 6160391-C-A **
26922017-G-T 24775870-G-T P1_r3 **
56838295-G-T **
21821451-G-A 19659565-G-A **
9108157-G-T **
3753983-C-A 3885942-C-A **
3842114-G-T 3974073-G-T **
7211163-C-A 7343122-C-A **
5214621-C-T 5346580-C-T **
7042680-C-T 7174639-C-T **
6664504-T-C 6796463-T-C **
6626811-C-A 6758770-C-A **
10851342-C-A **
6143119-G-T 6275078-G-T IR3_Dst **
5824943-C-A 5956902-C-A **
5708454-G-A 5840413-G-A **
5524139-G-A 5656098-G-A **
5189458-C-A 5321417-C-A **
3877811-G-T 4009770-G-T **
4649910-C-T 4781869-C-T **
4593253-G-T 4725212-G-T **
4469946-A-G 4601905-A-G **
4438828-C-T 4570787-C-T **
4375025-A-C 4506984-A-C **
4215877-G-T 4347836-G-T **
4207955-C-A 4339914-C-A **
4117770-C-A 4249729-C-A **
3893079-G-T 4025038-G-T **
10842929-C-T **
10985718-C-A **
10874629-C-A **
20492885-C-T 18330999-C-T P5_Dst **
21820259-C-A 19658373-C-A **
21531513-A-C 19369627-A-C **
21438262-C-G 19276376-C-G **
21334749-C-A 19172863-C-A **
20809765-G-A 18647879-G-A P4_Gap **
20760103-C-A 18598217-C-A P4_Prx **
20693733-C-T 18531847-C-T P4_Prx **
20493541-A-AG 18331655-A-AG P5_Dst **
19739347-AAC-A 17627467-AAC-A P5_Prx **
22012087-T-C 19850201-T-C **
19415565-A-G 17303685-A-G **
19393200-T-A 17281320-T-A **
18780713-A-G 16668833-A-G **
18577878-G-C 16465998-G-C **
18511195-CAAAA-C 16399315-CAAAA-C P6_Dst 30×A**
18360097-G-GCATCT 16248217-G-GCATCT P6_Prx **
18040513-T-C 15928633-T-C **
17485870-G-T 15373990-G-T **
17372344-C-T 15260464-C-T **
22012048-A-G 19850162-A-G **
22316347-T-A 20154461-T-A DYZ19 **
16997138-T-G 14885258-T-G **
24406584-C-A 22260437-C-A **
56847190-C-A **
28369983-TATA-T 26223836-TATA-T P1_gr2 **
28369975-TA-T 26223828-TA-T P1_gr2 **
27714056-A-C 25567909-A-C P1_Y2 **
27679574-T-A 25533427-T-A P1_Y2 **
27679553-GGAA-G 25533406-GGAA-G P1_Y2 **
26248483-TACATA-T 24102336-TACATA-T P1_Y1 **
24416939-G-A 22270792-G-A **
24296299-G-T 22150152-G-T P3_t1 **
22425342-G-C 20263456-G-C DYZ19 **
24296237-G-T 22150090-G-T P3_t1 **
24127617-G-T 21981470-G-T P3_b1 **
23522082-C-A 21360196-C-A **
23356469-G-T 21194583-G-T **
23019749-C-A 20857863-C-A **
22893343-T-G 20731457-T-G **
22732727-T-C 20570841-T-C **
22425378-C-A 20263492-C-A DYZ19 **
22425359-CAG-C 20263473-CAG-C DYZ19 **
17130400-C-CTT 15018520-C-CTT 21×T**
16342337-A-C 14230457-A-C **
10894699-T-C **
10985725-A-G **
13442089-C-A 11286413-C-A **
13282120-GT-G 11126444-GT-G **
11033016-C-A **
11031495-C-A **
11012325-T-G **
11012317-C-T **
11006210-T-G **
11005951-G-T **
13696949-T-G 11541273-T-G **
13696959-C-G 11541283-C-G **
10980283-T-C **
10976418-C-A **
10948526-C-A **
10937559-A-G **
10934136-C-A **
10932893-T-A **
10932294-C-A **
10931402-C-A **
10907934-G-T **
13484532-C-A 11328856-C-A **
13865969-CGAATGGAATGGAATGGAATGGAATGGAATG-C 11745263-CGAATGGAATGGAATGGAATGGAATGGAATG-C 12×GAATG**
16270847-A-G 14158967-A-G **
15084041-T-G 12972131-T-G **
15921748-CCGCTGCACA-C 13809868-CCGCTGCACA-C **
15798076-A-C 13686196-A-C **
15756513-A-G 13644633-A-G **
15653603-G-C 13541723-G-C **
15646831-G-T 13534951-G-T **
15290540-C-A 13178639-C-A **
15210909-A-G 13098995-A-G **
15117795-C-A 13005882-C-A **
14815683-T-C 12703754-T-C **
13881457-C-A 11760751-C-A **
14559575-G-T 12447776-G-T **
14517616-T-C 12405817-T-C **
14512065-C-T 12400270-C-T **
14510490-C-A 12398695-C-A **
14358140-C-A 12237435-C-A **
14000009-G-T 11879303-G-T **
13974684-T-C 11853978-T-C **
13938630-T-A 11817924-T-A **
13893368-C-T 11772662-C-T **
21438256-A-G 19276370-A-G **
13696950-C-G 11541274-C-G **
14147048-T-C 12026342-T-C **
10768563-A-T **
8481967-T-TAA 8613926-T-TAA 15×A**
10658149-C-CTT **
22428299-C-A 20266413-C-A DYZ19 **
8343955-G-T 8475914-G-T **
13486793-C-A 11331117-C-A **
10804817-T-C **
15699883-C-A 13588003-C-A **
10768615-T-A **
10768586-C-A **
19187415-C-A 17075535-C-A **
9438097-C-A 9600488-C-A **
7362472-A-C 7494431-A-C **
10842984-T-C **
10842941-T-A **
10842935-T-C **
10886499-T-C **
10886496-T-C **
10886492-A-G **
10886471-C-T **
10956636-T-C **
10842930-C-A **
10867979-TCATTCCATTC-T **
28698759-C-A 26552612-C-A **
10685397-C-A **
10846880-C-T **
8668360-C-A 8800319-C-A **
10932911-A-T **
10804790-C-A **
16708621-C-A 14596741-C-A **
8856806-G-A 8988765-G-A **
24931650-C-A 22785503-C-A g1 **
18682660-AAAAT-A 16570780-AAAAT-A 6×AAAT**
16211094-C-A 14099214-C-A **
10932922-T-G **
10877660-T-TTCTA **
13697000-G-T 11541324-G-T **
10937381-A-G **
10987735-A-T **
6403505-C-A 6535464-C-A **
26124427-C-CAAAAA 23978280-C-CAAAAA P1_Y1 31×A**
11019396-CTCCGT-C **
11019351-G-A **
28081885-CA-C 25935738-CA-C P1_Y2 **
10877662-A-AC **
14605922-A-C 12494124-A-C **
10804875-G-C **
10884737-T-A **
7135386-ATTTTT-A 7267345-ATTTTT-A 22×T**
21283364-C-A 19121478-C-A **
18256157-A-G 16144277-A-G **
18256147-C-G 16144267-C-G **
10930046-T-C **
10930036-TTTCTG-T **
10768655-A-C **
13223279-A-AG 11067603-A-AG **
13223274-G-A 11067598-G-A **
10834902-T-A **
20659273-T-G 18497387-T-G P4_Prx **
10881319-G-T **
9936493-C-A 10098884-C-A **
27963480-CA-C 25817333-CA-C P1_Y2 11×A**
16038937-C-A 13927057-C-A **
22012056-C-T 19850170-C-T AMM471 AM00321 Y30381 **
14213799-GAA-G 12093093-GAA-G **
9655083-G-A 9817474-G-A BY34286 HU583 IR3_Prx **
22425351-G-T 20263465-G-T DYZ19 **
28763367-C-A 26617220-C-A **
27998485-CA-C 25852338-CA-C P1_Y2 30×A**
10881317-A-C **
10881321-T-C **
10804867-C-A **
10982093-C-A **
56860994-G-A **
56860965-G-A **
3275707-C-A 3407666-C-A **
10930076-T-A **
10930060-A-T **
10930035-A-T **
10930030-A-G **
7081142-C-A 7213101-C-A **
10669337-C-A **
13722735-A-C 11567059-A-C **
10881326-T-A **
10836541-CTCCAT-C **
10768650-T-C **
10768644-G-A **
10881360-G-T **
10881353-A-C **
10881351-T-A **
10881348-G-C **
10881338-G-A **
10881337-G-T **
10836500-A-G **
10804806-ATTCC-A **
22135604-C-A 19973718-C-A **
19041388-G-T 16929508-G-T **
18905343-C-A 16793463-C-A **
7081230-C-A 7213189-C-A **
7257000-C-A 7388959-C-A **
16422643-C-A 14310763-C-A **
10932892-T-C **
13940246-G-A 11819540-G-A **
56848663-C-A **
28707343-C-A 26561196-C-A **
5645251-C-A 5777210-C-A **
19059747-CTTTTTTT-C 16947867-CTTTTTTT-C 25×T**
10970872-C-A **
11654540-C-A **
10954933-G-T **
16598808-C-A 14486928-C-A **
19377288-A-G 17265408-A-G 5×AGGG**
10760014-C-A **
56707258-G-T **
15399434-A-T 13287554-A-T **
10657590-C-T **
10657537-C-T **
27963551-T-TCC 25817404-T-TCC P1_Y2 **
4770604-G-T 4902563-G-T **
10985716-T-C **
10768725-A-T **
10801551-C-T **
10801498-A-T **
18022363-C-A 15910483-C-A **
20693735-G-A 18531849-G-A P4_Prx **
20693734-T-C 18531848-T-C P4_Prx **
5562806-C-A 5694765-C-A **
10868526-T-A **
18948220-C-A 16836340-C-A **
10804777-T-C **
16271027-C-A 14159147-C-A **
10977593-C-A **
10842987-T-C **
21438277-A-T 19276391-A-T **
10768662-C-A **
10632730-T-A **
16659005-C-A 14547125-C-A **
18256164-A-G 16144284-A-G **
17504083-G-T 15392203-G-T **
20998329-GA-G 18836443-GA-G P4_Dst **
13922583-C-T 11801877-C-T **
23333219-G-T 21171333-G-T **
10809365-T-C **
16033642-C-A 13921762-C-A **
6580073-C-A 6712032-C-A **
18093913-A-C 15982033-A-C **
10657540-C-A **
10836471-T-A **
5170492-C-A 5302451-C-A **
11648862-C-A **
24267221-GCGC-G 22121074-GCGC-G P3_b1 **
10954078-T-TTCCATCGCCG **
10915951-G-T **
22485799-T-G 20323913-T-G DYZ19 **
10887888-A-T **
16344458-GCTTCTT-G 14232578-GCTTCTT-G 12×CTT**
21665660-C-A 19503774-C-A **
7154838-C-A 7286797-C-A S1822 **
11021351-CTACTGCATTC-A **
10836514-C-T **
4094541-C-A 4226500-C-A **
10836520-A-C **
10870824-CTCCAT-C **
10990877-G-T **
10747633-G-T **
23128706-C-A 20966820-C-A **
10768585-T-A **
3815182-G-T 3947141-G-T **
10757035-T-C **
10846900-T-C **
16008200-G-T 13896320-G-T **
11010148-C-A ***
7270301-TG-G,TT 7402260-TG-G,TT ***
23482894-C-CAA 21321008-C-CAA 15×A***
13474677-C-A 11319001-C-A ***
2802718-C-CA 2934677-C-CA 11×A***
21730548-ATT-A,AT 19568662-ATT-A,AT 23×T***
56840578-G-T ***
10821856-CAAT-C,CCAT ***
16428021-G-T 14316141-G-T ***
10836561-A-C,T ***
10997710-G-GTTCCA ***
10837829-T-C ***
11027900-G-T ***
11658382-G-T ***
10756316-C-A ***
10768619-A-G ***
10677658-CTCAC-C,CTCAG ***
10648078-A-G ***
18756798-GT-G,GTT 16644918-GT-G,GTT 19×T***
20888525-G-T 18726639-G-T P4_Dst ***
3965432-C-A 4097391-C-A ***
6359640-TAAA-T,TAA 6491599-TAAA-T,TAA 22×A***
10757359-CCACTCCACTC-C,CCACTCCACTG ***
2810366-ATTT-A,ATT 2942325-ATTT-A,ATT 23×T***
13468640-ATATGTC-A 11312964-ATATGTC-A ***
21617776-CA-C,CAA 19455890-CA-C,CAA 15×A***
10760295-G-T ***
10992842-C-A ***
17030992-CAAAAAAA-C 14919112-CAAAAAAA-C 19×A***
11031750-C-A ***
10937402-T-A ***
11019373-C-A ***
11019374-C-T ***
13474697-C-G 11319021-C-G ***
15752638-CCTTCTT-C 13640758-CCTTCTT-C 25×CTT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN210731005265981351527999265
Used in age calculations1005265981351527999265
Counts of SNPs2020
Variant counts last updated 2019-09-10 00:14:49.



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