Dougherty
BigY3: 54968, BigY2: 54968MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY3 54968 | BigY2 54968 |
---|---|---|---|---|---|---|---|---|
hg19:Y:28810127-T-C hg38:Y:26663980-T-C | A* | |||||||
hg19:Y:24573423-C-CTT hg38:Y:22427276-C-CTT | P3_t2 | 21×T | A* | |||||
hg19:Y:13489722-C-T hg38:Y:11334046-C-T | A* | |||||||
hg19:Y:13450625-A-T hg38:Y:11294949-A-T | A* | |||||||
hg19:Y:22823540-C-T hg38:Y:20661654-C-T | BY199638 | Y | Y | + | + | |||
hg19:Y:3998337-T-G hg38:Y:4130296-T-G | FT319186 | + | ||||||
hg19:Y:14668000-C-G hg38:Y:12556066-C-G | FT311892 | Y | Y | + | ||||
hg19:Y:2780632-G-GACAC hg38:Y:2912591-G-GACAC | 14×AC | * | ||||||
hg19:Y:5691347-A-G hg38:Y:5823306-A-G | ** | |||||||
hg19:Y:4466853-T-C hg38:Y:4598812-T-C | FGC38205 | ** | ||||||
hg19:Y:16148164-G-T hg38:Y:14036284-G-T | P8_Dst | ** | ||||||
hg19:Y:5828966-AACACACACAC-A hg38:Y:5960925-AACACACACAC-A | 22×AC | ** | ||||||
hg19:Y:27497058-C-T hg38:Y:25350911-C-T | P1_Y2 | ** | ||||||
hg19:Y:26514931-TCACA-T hg38:Y:24368784-TCACA-T | P1_Y1 | 9×CA | ** | |||||
hg19:Y:14283414-C-A hg38:Y:12162708-C-A | ** | |||||||
hg38:Y:10768655-A-C | ** | |||||||
hg38:Y:10802209-T-A | ** | |||||||
hg38:Y:10802227-A-T | ** | |||||||
hg19:Y:9936490-A-G hg38:Y:10098881-A-G | ** | |||||||
hg19:Y:9936510-T-A hg38:Y:10098901-T-A | ** | |||||||
hg19:Y:13710367-G-T hg38:Y:11554691-G-T | DYZ17 | ** | ||||||
hg19:Y:21320178-C-A hg38:Y:19158292-C-A | ** | |||||||
hg19:Y:4179265-C-A hg38:Y:4311224-C-A | ** | |||||||
hg19:Y:15157640-C-G hg38:Y:13045727-C-G | ** | |||||||
hg19:Y:20533433-C-A hg38:Y:18371547-C-A | P5_Dst | ** | ||||||
hg19:Y:3965259-C-A hg38:Y:4097218-C-A | ** | |||||||
hg38:Y:10893643-C-A | ** | |||||||
hg38:Y:10989153-A-C | ** | |||||||
hg38:Y:10751191-T-C | ** | |||||||
hg19:Y:20440401-GT-G hg38:Y:18278515-GT-G | P5_Dst | ** | ||||||
hg38:Y:10858637-A-G | ** | |||||||
hg38:Y:10858649-TG-T | ** | |||||||
hg19:Y:22309998-C-G hg38:Y:20148112-C-G | DYZ19 | ** | ||||||
hg19:Y:18890464-CAAA-C hg38:Y:16778584-CAAA-C | 15×A | ** | ||||||
hg38:Y:10749136-C-A | ** | |||||||
hg38:Y:10911651-C-A | ** | |||||||
hg38:Y:10995475-C-A | ** | |||||||
hg19:Y:27497042-C-T hg38:Y:25350895-C-T | P1_Y2 | 9×T | ** | |||||
hg38:Y:10798204-AC-A | ** | |||||||
hg38:Y:10798217-A-G | ** | |||||||
hg19:Y:15157681-T-C hg38:Y:13045768-T-C | ** | |||||||
hg19:Y:15157684-T-C hg38:Y:13045771-T-C | ** | |||||||
hg19:Y:26043744-A-AG hg38:Y:23897597-A-AG | P1_Y1 | ** | ||||||
hg38:Y:10884556-C-A | ** | |||||||
hg19:Y:3111748-C-A hg38:Y:3243707-C-A | ** | |||||||
hg19:Y:28537817-C-A hg38:Y:26391670-C-A | ** | |||||||
hg38:Y:10877700-T-A | ** | |||||||
hg38:Y:10911661-C-G | ** | |||||||
hg19:Y:17968947-C-A hg38:Y:15857067-C-A | ** | |||||||
hg19:Y:16344650-C-A hg38:Y:14232770-C-A | ** | |||||||
hg38:Y:10663046-G-A | ** | |||||||
hg38:Y:11019204-C-A | ** | |||||||
hg19:Y:3131877-G-T hg38:Y:3263836-G-T | ** | |||||||
hg19:Y:6505182-C-A hg38:Y:6637141-C-A | ** | |||||||
hg38:Y:10671797-C-T | ** | |||||||
hg38:Y:10994466-C-A | ** | |||||||
hg38:Y:10691184-T-C | ** | |||||||
hg38:Y:10895769-T-G | ** | |||||||
hg19:Y:9015443-G-T hg38:Y:9177834-G-T | ** | |||||||
hg19:Y:13461553-A-G hg38:Y:11305877-A-G | ** | |||||||
hg19:Y:17203425-C-T hg38:Y:15091545-C-T | ** | |||||||
hg19:Y:8811233-C-A hg38:Y:8943192-C-A | ** | |||||||
hg38:Y:10969605-C-A | ** | |||||||
hg19:Y:4563280-G-T hg38:Y:4695239-G-T | ** | |||||||
hg38:Y:10690923-C-A | ** | |||||||
hg38:Y:10877692-C-CTTCTT | ** | |||||||
hg38:Y:10955242-C-A | ** | |||||||
hg19:Y:20535150-A-G hg38:Y:18373264-A-G | P5_Dst | ** | ||||||
hg19:Y:20535153-T-C hg38:Y:18373267-T-C | P5_Dst | ** | ||||||
hg19:Y:20535164-A-G hg38:Y:18373278-A-G | P5_Dst | ** | ||||||
hg19:Y:21422161-CA-C hg38:Y:19260275-CA-C | ** | |||||||
hg19:Y:17355571-G-A hg38:Y:15243691-G-A | ** | |||||||
hg19:Y:17355584-G-A hg38:Y:15243704-G-A | ** | |||||||
hg19:Y:17355593-A-G hg38:Y:15243713-A-G | ** | |||||||
hg38:Y:10690553-C-A | ** | |||||||
hg38:Y:10946609-C-A | ** | |||||||
hg19:Y:3606036-C-A hg38:Y:3737995-C-A | ** | |||||||
hg38:Y:10977085-C-T | ** | |||||||
hg38:Y:10930446-G-T | ** | |||||||
hg19:Y:28049619-CTGTT-C hg38:Y:25903472-CTGTT-C | P1_Y2 | ** | ||||||
hg38:Y:10811368-T-TACATA | ** | |||||||
hg38:Y:10811449-A-C | ** | |||||||
hg19:Y:20535156-G-A hg38:Y:18373270-G-A | P5_Dst | ** | ||||||
hg19:Y:16351902-G-T hg38:Y:14240022-G-T | ** | |||||||
hg19:Y:3790617-C-A hg38:Y:3922576-C-A | ** | |||||||
hg19:Y:21391649-C-A hg38:Y:19229763-C-A | ** | |||||||
hg38:Y:10956055-A-C | ** | |||||||
hg38:Y:10956060-A-C | ** | |||||||
hg38:Y:10956062-C-T | ** | |||||||
hg19:Y:18440413-TACAC-T hg38:Y:16328533-TACAC-T | P6_Dst | 17×AC | ** | |||||
hg19:Y:7131384-A-C hg38:Y:7263343-A-C | ** | |||||||
hg19:Y:7053833-C-A hg38:Y:7185792-C-A | Y83242 | ** | ||||||
hg38:Y:10811402-CTCCAT-C | ** | |||||||
hg38:Y:10807071-T-G | ** | |||||||
hg19:Y:15881936-C-T hg38:Y:13770056-C-T | ** | |||||||
hg19:Y:15881938-G-A hg38:Y:13770058-G-A | ** | |||||||
hg38:Y:10916695-G-T | ** | |||||||
hg38:Y:10818990-C-A | ** | |||||||
hg38:Y:10750903-C-A | ** | |||||||
hg19:Y:13326714-C-A hg38:Y:11171038-C-A | ** | |||||||
hg38:Y:56855815-C-A | ** | |||||||
hg19:Y:27497023-A-T hg38:Y:25350876-A-T | P1_Y2 | ** | ||||||
hg38:Y:10948468-A-G | ** | |||||||
hg19:Y:15881985-G-T hg38:Y:13770105-G-T | ** | |||||||
hg38:Y:10671798-A-G | ** | |||||||
hg19:Y:6429627-A-G hg38:Y:6561586-A-G | ** | |||||||
hg19:Y:28027424-T-TC hg38:Y:25881277-T-TC | P1_Y2 | ** | ||||||
hg19:Y:13722752-C-G hg38:Y:11567076-C-G | DYZ17 | ** | ||||||
hg19:Y:19737320-T-C hg38:Y:17625440-T-C | P5_Prx | ** | ||||||
hg19:Y:13884864-GAA-G hg38:Y:11764158-GAA-G | 11×A | ** | ||||||
hg19:Y:5022007-GAAAAAA-G hg38:Y:5153966-GAAAAAA-G | 16×A | ** | ||||||
hg19:Y:21427673-C-A hg38:Y:19265787-C-A | ** | |||||||
hg19:Y:28560092-C-A hg38:Y:26413945-C-A | ** | |||||||
hg19:Y:23006918-C-A hg38:Y:20845032-C-A | ** | |||||||
hg38:Y:10657034-C-A | ** | |||||||
hg19:Y:20473623-GAT-G hg38:Y:18311737-GAT-G | P5_Dst | ** | ||||||
hg19:Y:19673370-A-T hg38:Y:17561490-A-T | P5_Prx | ** | ||||||
hg19:Y:27778166-T-TC hg38:Y:25632019-T-TC | P1_Y2 | ** | ||||||
hg19:Y:23184769-C-A hg38:Y:21022883-C-A | ** | |||||||
hg19:Y:15369155-C-A hg38:Y:13257275-C-A | ** | |||||||
hg38:Y:10788453-C-A | ** | |||||||
hg38:Y:10684577-C-T | ** | |||||||
hg38:Y:10630628-C-G | ** | |||||||
hg38:Y:10831275-T-C | ** | |||||||
hg38:Y:10831295-C-T | ** | |||||||
hg38:Y:10831299-T-C | ** | |||||||
hg19:Y:25964895-GTTTT-G hg38:Y:23818748-GTTTT-G | P1_Y1 | 23×T | ** | |||||
hg19:Y:7306582-C-A hg38:Y:7438541-C-A | ** | |||||||
hg19:Y:3116511-C-A hg38:Y:3248470-C-A | ** | |||||||
hg19:Y:22268528-C-A hg38:Y:20106642-C-A | DYZ19 | ** | ||||||
hg19:Y:19547452-T-A hg38:Y:17435572-T-A | ** | |||||||
hg19:Y:7243610-C-A hg38:Y:7375569-C-A | ** | |||||||
hg19:Y:21042988-C-A hg38:Y:18881102-C-A | ** | |||||||
hg38:Y:10945345-G-T | ** | |||||||
hg38:Y:10946658-A-T | ** | |||||||
hg19:Y:17490081-C-CAA hg38:Y:15378201-C-CAA | 14×A | ** | ||||||
hg19:Y:15157713-A-G hg38:Y:13045800-A-G | ** | |||||||
hg19:Y:20641575-C-A hg38:Y:18479689-C-A | P4_Prx | ** | ||||||
hg38:Y:10630602-TC-T | ** | |||||||
hg19:Y:6490517-C-A hg38:Y:6622476-C-A | ** | |||||||
hg38:Y:10656369-C-A | ** | |||||||
hg19:Y:15936822-G-A hg38:Y:13824942-G-A | ** | |||||||
hg19:Y:13597225-C-A hg38:Y:11441549-C-A | ** | |||||||
hg38:Y:10948471-T-C | ** | |||||||
hg19:Y:7310525-C-T hg38:Y:7442484-C-T | ** | |||||||
hg19:Y:15157626-G-A hg38:Y:13045713-G-A | ** | |||||||
hg19:Y:20322183-ATTTT-A hg38:Y:18160297-ATTTT-A | P5_Dst | 15×T | ** | |||||
hg19:Y:18951513-A-G hg38:Y:16839633-A-G | ** | |||||||
hg19:Y:14530818-C-A hg38:Y:12419019-C-A | ** | |||||||
hg38:Y:10998804-C-A | ** | |||||||
hg19:Y:17203401-C-G hg38:Y:15091521-C-G | ** | |||||||
hg19:Y:20535163-G-A hg38:Y:18373277-G-A | P5_Dst | ** | ||||||
hg19:Y:15881982-G-C hg38:Y:13770102-G-C | ** | |||||||
hg38:Y:10690703-C-T | FT429203 | ** | ||||||
hg38:Y:10898285-T-C | ** | |||||||
hg38:Y:10833525-C-A | ** | |||||||
hg38:Y:10811419-C-A | ** | |||||||
hg19:Y:15881903-C-T hg38:Y:13770023-C-T | ** | |||||||
hg19:Y:20535162-T-C hg38:Y:18373276-T-C | P5_Dst | ** | ||||||
hg19:Y:17355596-A-C hg38:Y:15243716-A-C | ** | |||||||
hg38:Y:10955188-T-A | ** | |||||||
hg19:Y:2985490-C-A hg38:Y:3117449-C-A | ** | |||||||
hg19:Y:3103670-C-G hg38:Y:3235629-C-G | ** | |||||||
hg19:Y:3103967-G-T hg38:Y:3235926-G-T | ** | |||||||
hg19:Y:3123244-C-A hg38:Y:3255203-C-A | ** | |||||||
hg19:Y:3271492-C-A hg38:Y:3403451-C-A | ** | |||||||
hg19:Y:3443725-T-C hg38:Y:3575684-T-C | ** | |||||||
hg19:Y:3514087-G-T hg38:Y:3646046-G-T | ** | |||||||
hg19:Y:4201689-C-A hg38:Y:4333648-C-A | ** | |||||||
hg19:Y:4441606-C-A hg38:Y:4573565-C-A | ** | |||||||
hg19:Y:4520564-A-T hg38:Y:4652523-A-T | ** | |||||||
hg19:Y:4627731-G-C hg38:Y:4759690-G-C | ** | |||||||
hg19:Y:4695340-C-A hg38:Y:4827299-C-A | FT223427 | ** | ||||||
hg19:Y:4854361-G-T hg38:Y:4986320-G-T | ** | |||||||
hg19:Y:4939503-C-A hg38:Y:5071462-C-A | ** | |||||||
hg19:Y:4942688-T-C hg38:Y:5074647-T-C | ** | |||||||
hg19:Y:4975210-G-A hg38:Y:5107169-G-A | FT152554 | ** | ||||||
hg19:Y:4976950-C-T hg38:Y:5108909-C-T | ** | |||||||
hg19:Y:5228653-T-C hg38:Y:5360612-T-C | ** | |||||||
hg19:Y:5414076-A-T hg38:Y:5546035-A-T | ** | |||||||
hg19:Y:5550708-C-A hg38:Y:5682667-C-A | ** | |||||||
hg19:Y:5562840-C-A hg38:Y:5694799-C-A | ** | |||||||
hg19:Y:5739896-C-A hg38:Y:5871855-C-A | ** | |||||||
hg19:Y:5846580-C-A hg38:Y:5978539-C-A | ** | |||||||
hg19:Y:6096129-G-T hg38:Y:6228088-G-T | ** | |||||||
hg19:Y:6273111-A-T hg38:Y:6405070-A-T | IR3_Dst | ** | ||||||
hg19:Y:6403024-C-A hg38:Y:6534983-C-A | ** | |||||||
hg19:Y:6456167-C-A hg38:Y:6588126-C-A | ** | |||||||
hg19:Y:6483747-C-A hg38:Y:6615706-C-A | ** | |||||||
hg19:Y:6532865-G-T hg38:Y:6664824-G-T | ** | |||||||
hg19:Y:6833161-T-A hg38:Y:6965120-T-A | ** | |||||||
hg19:Y:6984564-T-G hg38:Y:7116523-T-G | ** | |||||||
hg19:Y:7166445-C-A hg38:Y:7298404-C-A | ** | |||||||
hg19:Y:7288039-G-T hg38:Y:7419998-G-T | ** | |||||||
hg19:Y:7310514-T-G hg38:Y:7442473-T-G | ** | |||||||
hg19:Y:7381161-C-A hg38:Y:7513120-C-A | ** | |||||||
hg19:Y:8057199-C-A hg38:Y:8189158-C-A | ** | |||||||
hg38:Y:9056527-A-G | ** | |||||||
hg19:Y:9306356-G-A hg38:Y:9468747-G-A | ** | |||||||
hg19:Y:9306362-G-T hg38:Y:9468753-G-T | ** | |||||||
hg19:Y:9306396-G-A hg38:Y:9468787-G-A | ** | |||||||
hg19:Y:9430232-T-C hg38:Y:9592623-T-C | ** | |||||||
hg19:Y:9513708-T-C hg38:Y:9676099-T-C | ** | |||||||
hg38:Y:10618114-C-A | ** | |||||||
hg38:Y:10658615-T-G | ** | |||||||
hg38:Y:10664075-C-A | ** | |||||||
hg38:Y:10672073-C-A | ** | |||||||
hg38:Y:10684569-A-T | ** | |||||||
hg38:Y:10684583-C-G | ** | |||||||
hg38:Y:10684599-G-C | ** | |||||||
hg38:Y:10687596-A-G | ** | |||||||
hg38:Y:10750917-T-C | ** | |||||||
hg38:Y:10771753-G-T | ** | |||||||
hg38:Y:10802531-C-A | ** | |||||||
hg38:Y:10806030-T-C | ** | |||||||
hg38:Y:10811391-ATTCAATTACT-A | ** | |||||||
hg38:Y:10817671-C-A | ** | |||||||
hg38:Y:10820829-C-A | ** | |||||||
hg38:Y:10832686-G-T | ** | |||||||
hg38:Y:10833463-C-A | ** | |||||||
hg38:Y:10848632-C-A | ** | |||||||
hg38:Y:10852286-C-A | ** | |||||||
hg38:Y:10852344-C-A | ** | |||||||
hg38:Y:10858607-A-C | ** | |||||||
hg38:Y:10858641-T-A | ** | |||||||
hg38:Y:10858643-G-C | ** | |||||||
hg38:Y:10858647-A-G | ** | |||||||
hg38:Y:10867341-C-A | ** | |||||||
hg38:Y:10877549-C-A | ** | |||||||
hg38:Y:10882337-A-C | ** | |||||||
hg38:Y:10884175-A-T | ** | |||||||
hg38:Y:10884181-G-C | ** | |||||||
hg38:Y:10893667-C-A | ** | |||||||
hg38:Y:10896441-T-TC | ** | |||||||
hg38:Y:10898259-A-T | ** | |||||||
hg38:Y:10898260-C-T | ** | |||||||
hg38:Y:10898281-T-A | ** | |||||||
hg38:Y:10898315-T-C | ** | |||||||
hg38:Y:10916542-C-A | ** | |||||||
hg38:Y:10931728-C-CT | ** | |||||||
hg38:Y:10948467-A-T | ** | |||||||
hg38:Y:10953812-C-A | ** | |||||||
hg38:Y:10956053-T-G | ** | |||||||
hg38:Y:10965186-C-T | ** | |||||||
hg38:Y:10983443-C-A | ** | |||||||
hg38:Y:10988354-A-G | ** | |||||||
hg38:Y:11006911-C-A | ** | |||||||
hg38:Y:11012299-A-AATGAAGT | ** | |||||||
hg38:Y:11012301-TCC-T | ** | |||||||
hg38:Y:11025770-T-C | ** | |||||||
hg38:Y:11032998-T-C | ** | |||||||
hg19:Y:13207815-G-T hg38:Y:11052139-G-T | ** | |||||||
hg19:Y:13287089-C-A hg38:Y:11131413-C-A | ** | |||||||
hg19:Y:13328702-G-T hg38:Y:11173026-G-T | ** | |||||||
hg19:Y:13328731-C-T hg38:Y:11173055-C-T | ** | |||||||
hg19:Y:13360713-C-A hg38:Y:11205037-C-A | ** | |||||||
hg19:Y:13460906-G-T hg38:Y:11305230-G-T | ** | |||||||
hg19:Y:13480848-A-T hg38:Y:11325172-A-T | ** | |||||||
hg19:Y:13567865-C-A hg38:Y:11412189-C-A | ** | |||||||
hg19:Y:13588888-C-A hg38:Y:11433212-C-A | ** | |||||||
hg19:Y:13592922-C-A hg38:Y:11437246-C-A | ** | |||||||
hg19:Y:13722368-G-C hg38:Y:11566692-G-C | DYZ17 | ** | ||||||
hg19:Y:13952457-C-A hg38:Y:11831751-C-A | ** | |||||||
hg19:Y:13974754-A-G hg38:Y:11854048-A-G | ** | |||||||
hg19:Y:13974755-G-T hg38:Y:11854049-G-T | ** | |||||||
hg19:Y:13974762-A-G hg38:Y:11854056-A-G | ** | |||||||
hg19:Y:13974764-T-C hg38:Y:11854058-T-C | ** | |||||||
hg19:Y:13974773-A-G hg38:Y:11854067-A-G | ** | |||||||
hg19:Y:13974776-A-T hg38:Y:11854070-A-T | ** | |||||||
hg19:Y:13975807-G-T hg38:Y:11855101-G-T | ** | |||||||
hg19:Y:14147917-G-A hg38:Y:12027211-G-A | ** | |||||||
hg19:Y:14422406-A-G hg38:Y:12301681-A-G | ** | |||||||
hg19:Y:14451794-C-G hg38:Y:12331067-C-G | ** | |||||||
hg19:Y:14499690-G-T hg38:Y:12387895-G-T | ** | |||||||
hg19:Y:15080711-G-C hg38:Y:12968801-G-C | FT260683 | ** | ||||||
hg19:Y:15157637-G-A hg38:Y:13045724-G-A | ** | |||||||
hg19:Y:15157638-A-T hg38:Y:13045725-A-T | ** | |||||||
hg19:Y:15157670-C-G hg38:Y:13045757-C-G | ** | |||||||
hg19:Y:15157707-C-TT hg38:Y:13045794-C-TT | ** | |||||||
hg19:Y:15157711-C-T hg38:Y:13045798-C-T | ** | |||||||
hg19:Y:15395082-C-A hg38:Y:13283202-C-A | ** | |||||||
hg19:Y:15881922-G-A hg38:Y:13770042-G-A | ** | |||||||
hg19:Y:15881934-G-A hg38:Y:13770054-G-A | ** | |||||||
hg19:Y:15881983-G-A hg38:Y:13770103-G-A | ** | |||||||
hg19:Y:16008932-G-A hg38:Y:13897052-G-A | ** | |||||||
hg19:Y:16063475-C-A hg38:Y:13951595-C-A | ** | |||||||
hg19:Y:16069981-G-T hg38:Y:13958101-G-T | ** | |||||||
hg19:Y:16205974-C-G hg38:Y:14094094-C-G | ** | |||||||
hg19:Y:16445625-C-A hg38:Y:14333745-C-A | ** | |||||||
hg19:Y:16618541-G-T hg38:Y:14506661-G-T | ** | |||||||
hg19:Y:16702344-C-A hg38:Y:14590464-C-A | ** | |||||||
hg19:Y:17203396-G-A hg38:Y:15091516-G-A | ** | |||||||
hg19:Y:17203418-C-T hg38:Y:15091538-C-T | ** | |||||||
hg19:Y:17355588-G-T hg38:Y:15243708-G-T | ** | |||||||
hg19:Y:17355597-G-A hg38:Y:15243717-G-A | ** | |||||||
hg19:Y:17775225-G-T hg38:Y:15663345-G-T | ** | |||||||
hg19:Y:18422681-C-A hg38:Y:16310801-C-A | P6_Gap | ** | ||||||
hg19:Y:18511100-G-T hg38:Y:16399220-G-T | P6_Dst | ** | ||||||
hg19:Y:18928643-A-G hg38:Y:16816763-A-G | ** | |||||||
hg19:Y:18928654-A-G hg38:Y:16816774-A-G | ** | |||||||
hg19:Y:18928660-A-G hg38:Y:16816780-A-G | ** | |||||||
hg19:Y:18928661-T-C hg38:Y:16816781-T-C | ** | |||||||
hg19:Y:18928669-C-T hg38:Y:16816789-C-T | ** | |||||||
hg19:Y:18951512-C-T hg38:Y:16839632-C-T | ** | |||||||
hg19:Y:18951521-TA-T hg38:Y:16839641-TA-T | ** | |||||||
hg19:Y:18956139-C-A hg38:Y:16844259-C-A | ** | |||||||
hg19:Y:19253395-A-G hg38:Y:17141515-A-G | ** | |||||||
hg19:Y:19690842-C-A hg38:Y:17578962-C-A | P5_Prx | ** | ||||||
hg19:Y:20004080-C-A hg38:Y:17892200-C-A | P5_Prx | ** | ||||||
hg19:Y:20468891-G-T hg38:Y:18307005-G-T | P5_Dst | ** | ||||||
hg19:Y:20535145-T-A hg38:Y:18373259-T-A | P5_Dst | ** | ||||||
hg19:Y:20535171-T-A hg38:Y:18373285-T-A | P5_Dst | ** | ||||||
hg19:Y:20535188-A-G hg38:Y:18373302-A-G | P5_Dst | ** | ||||||
hg19:Y:20600779-C-A hg38:Y:18438893-C-A | P5_Dst | ** | ||||||
hg19:Y:20600790-C-A hg38:Y:18438904-C-A | P5_Dst | ** | ||||||
hg19:Y:21120751-C-T hg38:Y:18958865-C-T | ** | |||||||
hg19:Y:21459797-AC-A hg38:Y:19297911-AC-A | ** | |||||||
hg19:Y:21910938-C-A hg38:Y:19749052-C-A | ** | |||||||
hg19:Y:22064006-A-G hg38:Y:19902120-A-G | ** | |||||||
hg19:Y:22155194-AG-A hg38:Y:19993308-AG-A | ** | |||||||
hg19:Y:22308463-C-A hg38:Y:20146577-C-A | DYZ19 | ** | ||||||
hg19:Y:22325652-T-C hg38:Y:20163766-T-C | DYZ19 | ** | ||||||
hg19:Y:22325662-C-A hg38:Y:20163776-C-A | DYZ19 | ** | ||||||
hg19:Y:22325666-G-T hg38:Y:20163780-G-T | DYZ19 | ** | ||||||
hg19:Y:22325681-G-T hg38:Y:20163795-G-T | DYZ19 | ** | ||||||
hg19:Y:22325686-A-G hg38:Y:20163800-A-G | DYZ19 | ** | ||||||
hg19:Y:22325688-G-A hg38:Y:20163802-G-A | DYZ19 | ** | ||||||
hg19:Y:22325693-T-G hg38:Y:20163807-T-G | DYZ19 | ** | ||||||
hg19:Y:22537455-G-T hg38:Y:20375569-G-T | ** | |||||||
hg19:Y:22801798-C-A hg38:Y:20639912-C-A | ** | |||||||
hg19:Y:22852113-G-T hg38:Y:20690227-G-T | ** | |||||||
hg19:Y:23126311-TA-T hg38:Y:20964425-TA-T | ** | |||||||
hg19:Y:23137093-C-A hg38:Y:20975207-C-A | ** | |||||||
hg19:Y:23848099-C-A hg38:Y:21686213-C-A | ** | |||||||
hg19:Y:23848210-G-T hg38:Y:21686324-G-T | ** | |||||||
hg19:Y:24080123-A-G hg38:Y:21933976-A-G | P3_b1 | ** | ||||||
hg19:Y:24240802-C-T hg38:Y:22094655-C-T | P3_b1 | ** | ||||||
hg19:Y:24624502-G-T hg38:Y:22478355-G-T | P3_t2 | ** | ||||||
hg19:Y:25312564-C-A hg38:Y:23166417-C-A | P2_r1 | ** | ||||||
hg19:Y:27466605-A-G hg38:Y:25320458-A-G | P1_Y2 | ** | ||||||
hg19:Y:27484504-G-T hg38:Y:25338357-G-T | P1_Y2 | ** | ||||||
hg19:Y:27569420-TG-T hg38:Y:25423273-TG-T | P1_Y2 | ** | ||||||
hg19:Y:27569422-TG-T hg38:Y:25423275-TG-T | P1_Y2 | ** | ||||||
hg19:Y:27761315-A-C hg38:Y:25615168-A-C | P1_Y2 | ** | ||||||
hg19:Y:28474713-A-T hg38:Y:26328566-A-T | ** | |||||||
hg19:Y:28542415-TCA-T hg38:Y:26396268-TCA-T | ** | |||||||
hg19:Y:28614178-T-C hg38:Y:26468031-T-C | ** | |||||||
hg19:Y:28706258-G-TT hg38:Y:26560111-G-TT | ** | |||||||
hg19:Y:28736197-G-A hg38:Y:26590050-G-A | ** | |||||||
hg38:Y2:24947-A-G | ** | |||||||
hg19:Y:13459572-T-A hg38:Y:11303896-T-A | ** | |||||||
hg19:Y:16145156-CATT-C hg38:Y:14033276-CATT-C | P8_Dst | ** | ||||||
hg19:Y:28563781-CATAA-C hg38:Y:26417634-CATAA-C | 5×ATAA | ** | ||||||
hg19:Y:3634309-A-G hg38:Y:3766268-A-G | ** | |||||||
hg19:Y:3957400-T-C hg38:Y:4089359-T-C | ** | |||||||
hg19:Y:4447137-T-C hg38:Y:4579096-T-C | ** | |||||||
hg19:Y:4608900-T-A hg38:Y:4740859-T-A | ** | |||||||
hg19:Y:4882104-C-T hg38:Y:5014063-C-T | ** | |||||||
hg19:Y:5370228-G-A hg38:Y:5502187-G-A | ** | |||||||
hg19:Y:5610902-A-G hg38:Y:5742861-A-G | ** | |||||||
hg19:Y:6423690-C-G hg38:Y:6555649-C-G | ** | |||||||
hg19:Y:6917321-T-A hg38:Y:7049280-T-A | ** | |||||||
hg19:Y:8288808-C-T hg38:Y:8420767-C-T | ** | |||||||
hg19:Y:9732865-A-G hg38:Y:9895256-A-G | IR3_Prx | ** | ||||||
hg19:Y:9946677-T-A hg38:Y:10109068-T-A | ** | |||||||
hg19:Y:13457802-A-G hg38:Y:11302126-A-G | ** | |||||||
hg19:Y:13998297-G-T hg38:Y:11877591-G-T | ** | |||||||
hg19:Y:15302527-C-G hg38:Y:13190626-C-G | ** | |||||||
hg19:Y:17849668-G-A hg38:Y:15737788-G-A | ** | |||||||
hg19:Y:18266169-G-A hg38:Y:16154289-G-A | ** | |||||||
hg19:Y:18876142-G-A hg38:Y:16764262-G-A | ** | |||||||
hg19:Y:19204254-C-T hg38:Y:17092374-C-T | ** | |||||||
hg19:Y:21952306-A-G hg38:Y:19790420-A-G | ** | |||||||
hg19:Y:28513492-G-T hg38:Y:26367345-G-T | ** | |||||||
hg19:Y:13295372-A-ATT hg38:Y:11139696-A-ATT | 13×T | *** | ||||||
hg19:Y:58971060-A-G hg38:Y:56824913-A-G | *** | |||||||
hg19:Y:17834187-AT-A hg38:Y:15722307-AT-A | 10×T | *** | ||||||
hg19:Y:2729648-CTTTTT-C hg38:Y:2861607-CTTTTT-C | 25×T | *** | ||||||
hg19:Y:16275568-C-A hg38:Y:14163688-C-A | *** | |||||||
hg38:Y:10673946-CCCATT-C | *** | |||||||
hg19:Y:13474465-T-C hg38:Y:11318789-T-C | *** | |||||||
hg19:Y:4203190-GAA-G hg38:Y:4335149-GAA-G | 14×A | *** | ||||||
hg19:Y:15158767-C-A hg38:Y:13046853-C-A | *** | |||||||
hg38:Y:10950489-C-T | *** | |||||||
hg38:Y:10887896-C-A,T | *** | |||||||
hg38:Y:10993153-C-A | *** | |||||||
hg19:Y:15179202-C-A hg38:Y:13067288-C-A | *** | |||||||
hg19:Y:6354334-G-T hg38:Y:6486293-G-T | *** | |||||||
hg38:Y:11026141-C-A | *** | |||||||
hg19:Y:13344834-T-A hg38:Y:11189158-T-A | *** | |||||||
hg19:Y:14526824-C-A hg38:Y:12415025-C-A | *** | |||||||
hg19:Y:13598593-A-T hg38:Y:11442917-A-T | *** | |||||||
hg38:Y:10995835-A-C,T | *** | |||||||
hg19:Y:13474444-C-T hg38:Y:11318768-C-T | *** | |||||||
hg19:Y:23802403-AAG-A hg38:Y:21640517-AAG-A | *** | |||||||
hg19:Y:27216728-C-T hg38:Y:25070581-C-T | P1_g3 | *** | ||||||
hg38:Y:10763052-C-A,T | *** | |||||||
hg38:Y:10947708-A-T | *** | |||||||
hg19:Y:13474459-C-GT hg38:Y:11318783-C-GT | *** | |||||||
hg38:Y:10796851-C-A | *** | |||||||
hg38:Y:11028015-C-A | *** | |||||||
hg19:Y:3991966-ACACT-A,ACT hg38:Y:4123925-ACACT-A,ACT | *** | |||||||
hg38:Y:10751180-T-C,G | *** | |||||||
hg38:Y:10789021-T-C | *** | |||||||
hg38:Y:11007367-C-A | *** | |||||||
hg38:Y:11022109-TTTA-T,TACA | *** | |||||||
hg38:Y:11022114-TCCATTCC-T,TCCACTAAATTCC | *** | |||||||
hg19:Y:13854652-G-T hg38:Y:11733946-G-T | DYZ17 | *** | ||||||
hg19:Y:13857231-G-A hg38:Y:11736525-G-A | DYZ17 | *** | ||||||
hg19:Y:15743836-C-A hg38:Y:13631956-C-A | *** | |||||||
hg38:Y:56742691-G-T | *** | |||||||
hg38:Y:56850117-T-C | *** | |||||||
hg19:Y:7460187-T-C hg38:Y:7592146-T-C | IR1_L | *** | ||||||
hg19:Y:16503182-T-C hg38:Y:14391302-T-C | *** | |||||||
hg19:Y:2979158-T-C hg38:Y:3111117-T-C | *** | |||||||
hg19:Y:6686450-C-A hg38:Y:6818409-C-A | *** | |||||||
hg19:Y:6885255-A-G hg38:Y:7017214-A-G | *** | |||||||
hg19:Y:7969706-C-T hg38:Y:8101665-C-T | *** | |||||||
hg19:Y:8169208-G-C hg38:Y:8301167-G-C | *** | |||||||
hg19:Y:13272461-A-G hg38:Y:11116785-A-G | *** | |||||||
hg19:Y:13344825-C-T hg38:Y:11189149-C-T | *** | |||||||
hg19:Y:13484155-A-G hg38:Y:11328479-A-G | *** | |||||||
hg19:Y:14000013-AT-A hg38:Y:11879307-AT-A | *** | |||||||
hg19:Y:14114468-T-C hg38:Y:11993762-T-C | *** | |||||||
hg19:Y:15893665-G-A hg38:Y:13781785-G-A | *** | |||||||
hg19:Y:17770339-A-G hg38:Y:15658459-A-G | *** | |||||||
hg19:Y:18879534-A-G hg38:Y:16767654-A-G | *** | |||||||
hg19:Y:19052614-T-C hg38:Y:16940734-T-C | *** | |||||||
hg19:Y:19464685-A-G hg38:Y:17352805-A-G | *** | |||||||
hg19:Y:21141139-A-G hg38:Y:18979253-A-G | *** | |||||||
hg19:Y:21515187-T-C hg38:Y:19353301-T-C | *** | |||||||
hg19:Y:22851561-C-T hg38:Y:20689675-C-T | *** | |||||||
hg19:Y:22962096-C-G hg38:Y:20800210-C-G | *** | |||||||
hg19:Y:23013603-G-A hg38:Y:20851717-G-A | *** | |||||||
hg19:Y:23825146-G-A hg38:Y:21663260-G-A | *** | |||||||
hg19:Y:23825153-A-C hg38:Y:21663267-A-C | *** | |||||||
hg19:Y:23825169-T-A hg38:Y:21663283-T-A | *** | |||||||
hg19:Y:23825172-C-A hg38:Y:21663286-C-A | *** | |||||||
hg19:Y:23825175-C-G hg38:Y:21663289-C-G | *** | |||||||
hg19:Y:24446850-AAAATATAT-A hg38:Y:22300703-AAAATATAT-A | *** | |||||||
hg19:Y:28575695-T-C hg38:Y:26429548-T-C | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 54968 | 10260527 | 8258222 | 8093561 |
Kit: 54968 | 14797921 | 9277080 | 8220276 |
Used in age calculations | 14797921 | 9277080 | 8220276 |
Counts of SNPs | 2 | 2 |
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