Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > S21184 > FGC13557 > FGC13563 > FGC22861

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B268088
10673891-T-A A*
10673884-A-T A*
6312783-T-A 6444742-T-A IR3_Dst A*
20661850-C-A 18499964-C-A P4_Prx A*
13687033-G-C 11531357-G-C A*
10673870-T-C A*
20622635-T-C 18460749-T-C P4_Prx A*
15751653-A-G 13639773-A-G BY207077 YY+
22263404-G-C 20101518-G-C DYZ19 +
15492585-G-C 13380705-G-C BY207002 YY+
21688373-C-G 19526487-C-G BY208313 YY+
21676810-G-T 19514924-G-T BY208310 YY+
21304025-T-A 19142139-T-A BY208195 YY+
19829643-C-T 17717763-C-T BY211984 P5_Prx +
22294007-T-A 20132121-T-A BY216458 DYZ19 +
7364772-G-C 7496731-G-C BY205817 YY+
17663326-A-T 15551446-A-T BY207590 YY+
16917979-C-A 14806099-C-A BY207382 YY+
14829592-T-C 12717659-T-C BY206819 YY+
16507859-T-A 14395979-T-A BY207246 YY+
15061521-C-T 12949613-C-T BY206897 YY+
22263381-T-G 20101495-T-G BY214729 DYZ19 +
22263403-G-T 20101517-G-T DYZ19 +
22440181-C-G 20278295-C-G BY218763 DYZ19 +
22459054-G-A 20297168-G-A BY220233 DYZ19 +
22464479-G-A 20302593-G-A BY221334 DYZ19 +
22973030-T-C 20811144-T-C BY208712 YY+
23021441-C-G 20859555-C-G BY208718 YY+
8180348-T-C 8312307-T-C BY206053 YY+
23458777-A-G 21296891-A-G BY208846 YY+
8198869-G-A 8330828-G-A BY206061 YY+
8310330-C-T 8442289-C-T BY206097 YY+
8675199-C-T 8807158-C-T BY206243 YY+
21312307-G-A 19150421-G-A Z12686 YY+
8647483-G-A 8779442-G-A BY206235 YY+
8478885-G-A 8610844-G-A YY+
17913413-T-A 15801533-T-A YY*
17913411-C-G 15801531-C-G YY*
17913389-A-G 15801509-A-G CTS8278 YY*
23990455-G-GCA 21844308-G-GCA 9×CA*
6593332-C-A 6725291-C-A **
8379542-C-T 8511501-C-T **
6457751-A-T 6589710-A-T **
7115054-G-A 7247013-G-A **
6374150-C-A 6506109-C-A **
6369999-T-C 6501958-T-C **
5650377-G-T 5782336-G-T **
5645084-G-A 5777043-G-A **
7969576-T-G 8101535-T-G **
8974251-C-A 9136642-C-A **
8159395-T-G 8291354-T-G **
6663296-T-C 6795255-T-C **
4046888-C-A 4178847-C-A **
5511011-C-A 5642970-C-A **
2772360-T-A 2904319-T-A **
10782658-C-G **
10782659-C-T **
25651747-T-A 23505600-T-A P1_b3 **
15662327-C-A 13550447-C-A **
11023169-CT-C **
10942375-C-A **
10939123-T-A **
14077884-A-G 11957178-A-G **
13690857-A-C 11535181-A-C **
10753575-A-T **
10987044-G-A **
3437829-C-A 3569788-C-A **
5307924-T-C 5439883-T-C **
3585697-C-T 3717656-C-T **
3594111-C-A 3726070-C-A **
3649182-G-A 3781141-G-A **
3961010-T-A 4092969-T-A **
9998882-T-C 10161273-T-C **
4356852-T-C 4488811-T-C **
4378019-G-A 4509978-G-A **
4428056-A-G 4560015-A-G **
4917765-C-A 5049724-C-A **
5038811-A-G 5170770-A-G **
5236356-C-A 5368315-C-A **
9934896-A-G 10097287-A-G **
16107442-G-GTTT 13995562-G-GTTT P8_Prx 30×T**
10790484-C-A **
22293999-A-G 20132113-A-G DYZ19 **
17518650-C-T 15406770-C-T **
17622771-A-C 15510891-A-C **
17737903-GA-G 15626023-GA-G **
17834386-G-T 15722506-G-T **
18520591-A-G 16408711-A-G P6_Dst **
18874319-A-AT 16762439-A-AT **
18932747-T-C 16820867-T-C **
18972809-A-C 16860929-A-C **
20458554-A-G 18296668-A-G P5_Dst **
21268435-G-T 19106549-G-T **
22854940-T-A 20693054-T-A **
16706556-C-A 14594676-C-A **
23028903-C-T 20867017-C-T **
21752273-C-A **
24305088-T-C 22158941-T-C P3_t1 **
27007865-A-G 24861718-A-G P1_r4 **
27791875-T-TCCA 25645728-T-TCCA P1_Y2 **
27791880-T-C 25645733-T-C P1_Y2 **
27791889-T-G 25645742-T-G P1_Y2 **
28693862-C-T 26547715-C-T **
28693972-C-A 26547825-C-A **
28716712-G-A 26570565-G-A **
17074643-T-TC 14962763-T-TC **
16665404-C-A 14553524-C-A **
10791355-CTATTG-C **
13194537-C-CTCCAT 11038861-C-CTCCAT **
10817967-T-G **
10862695-ACCATT-A **
10898883-T-C **
10924818-C-A **
10927984-T-G **
10958548-C-G **
10972712-A-C **
10978575-C-A **
11026852-G-T **
11033192-C-T **
10782640-C-CCA **
16653030-T-C 14541150-T-C **
13328534-C-A 11172858-C-A **
13494024-T-C 11338348-T-C **
13690871-C-T 11535195-C-T **
13690872-G-A 11535196-G-A **
13690875-G-A 11535199-G-A **
11657805-C-A **
14051929-A-T 11931223-A-T **
14114232-G-T 11993526-G-T **
12378839-C-A **
15066081-C-A 12954173-C-A **
15894556-T-C 13782676-T-C **
13227188-G-T 11071512-G-T **
10973025-C-A **
10782636-TAG-T **
19318178-CTTTTT-C 17206298-CTTTTT-C 28×T**
10975743-C-CTCCTA **
10975778-T-TTTCCC **
10975788-T-C **
10975798-T-C **
10975759-T-A **
10844852-C-T **
10844868-C-A **
20798750-A-AC 18636864-A-AC P4_Prx **
10828707-AC-A **
16164467-CA-C 14052587-CA-C P8_Dst **
56707259-C-T **
11023159-T-C **
8160177-G-T 8292136-G-T **
10925503-C-A **
10925553-C-G **
10925557-T-C **
25955983-TG-T 23809836-TG-T P1_Y1 **
10868181-C-A **
26114478-A-AC 23968331-A-AC P1_Y1 **
4094934-C-A 4226893-C-A **
19644698-C-A 17532818-C-A P5_Prx **
11030359-A-C **
11024418-C-A **
11024422-A-C **
24595409-T-A 22449262-T-A P3_t2 **
11015170-T-A **
11024441-CA-C **
15963965-CT-C 13852085-CT-C 9×T**
18534201-TAC-T 16422321-TAC-T P6_Dst 8×AC**
19393143-C-A 17281263-C-A **
19611177-G-T 17499297-G-T P5_Prx **
14960241-G-GT 12848316-G-GT 9×T**
10654574-CATT-C **
10987730-A-C **
10846059-T-A **
10655482-G-T **
11025983-C-G **
10925488-C-A **
10839894-C-CTCCTT **
10754934-CTCCAT-C **
13446582-T-G 11290906-T-G **
10925489-C-A **
10939136-G-C **
21149580-AG-A 18987694-AG-A **
10987480-A-T **
7334159-C-A 7466118-C-A **
9965112-C-A 10127503-C-A **
17511686-C-A 15399806-C-A **
10795079-T-C **
19510322-G-T 17398442-G-T **
10824144-T-TAAC **
7322543-C-CT 7454502-C-CT 10×T**
11024437-A-AC **
13461016-T-C 11305340-T-C **
56822583-T-A **
14144003-T-A 12023297-T-A FT2893 **
11030292-C-T **
11030294-T-C **
11030299-C-CCATTT **
4469976-C-A 4601935-C-A **
10804071-G-T **
10792404-T-A **
56872922-G-T **
14404792-C-A 12284089-C-A **
10939124-G-T **
10887326-ACCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT-A **
10800864-C-A **
10987488-C-A **
28073843-T-TAG 25927696-T-TAG P1_Y2 **
11024398-T-C **
7860201-C-A 7992160-C-A **
4937018-C-A 5068977-C-A **
11644733-G-T **
3834674-C-A 3966633-C-A **
14397542-C-A 12276838-C-A **
56871623-T-TAAAAAAA 9×A**
20661880-C-A 18499994-C-A P4_Prx **
10776851-C-A **
6368141-C-T 6500100-C-T **
10894370-G-T **
18174792-G-T 16062912-G-T **
10782643-G-C **
15070446-CAAAAAA-C 12958537-CAAAAAA-C 19×A**
11030390-C-T **
11013704-C-A **
19510309-G-T 17398429-G-T **
10782682-C-T **
11023153-A-T **
19231319-CTTTTTTT-C 17119439-CTTTTTTT-C 24×T**
13307669-C-A 11151993-C-A **
10683239-A-C **
10958543-C-G **
16467401-C-A 14355521-C-A **
10941075-C-A **
11025992-C-A **
11030372-T-C **
11025969-CCTCCATTT-C **
11025964-A-ACTT **
59019171-T-C 56873024-T-C ***
10666955-GT-G ***
17301238-CAAAAAA-C 15189358-CAAAAAA-C 23×A***
23343498-C-CT 21181612-C-CT 10×T***
10911791-CT-C ***
10911833-C-A ***
11650006-G-A ***
7255113-G-A 7387072-G-A ***
2986165-C-A 3118124-C-A ***
28805775-A-T 26659628-A-T ***
10673839-A-C ***
22561830-G-GT,GTT 20399944-G-GT,GTT 13×T***
10673842-C-G ***
21616709-C-A 19454823-C-A ***
14102114-G-T 11981408-G-T ***
10962950-T-A ***
11015866-ACCATTCCATT-A ***
22278548-TG-T 20116662-TG-T DYZ19 ***
13719464-G-A,C 11563788-G-A,C ***
7132062-C-A 7264021-C-A ***
11017513-C-A ***
10664819-C-T ***
10664818-T-G ***
18195154-ATT-A 16083274-ATT-A 29×T***
10673899-A-G ***
7141996-G-A 7273955-G-A ***
20125598-C-T 18013718-C-T P5_Dst ***
56872974-C-T ***
10761172-C-G,T ***
21923915-T-C 19762029-T-C ***
13465969-A-G 11310293-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B268088986600580006707875984
Used in age calculations986600580006707875984
Counts of SNPs2424
Variant counts last updated 2019-08-26 23:04:05.



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