Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > ZZ45 > Z36/S206 > A7970 > BY4042 > BY32259

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
491357
22313209-G-A 20151323-G-A DYZ19 A*
28816758-T-A 26670611-T-A A*
10958315-A-T A*
2724100-A-G 2856059-A-G BY56017 YY+
23839777-T-A 21677891-T-A BY148229 Y+
21610297-G-A 19448411-G-A BY47854 YY+
23775773-A-C 21613887-A-C BY147618 Y+
23616821-G-A 21454935-G-A BY146748 YY+
21643432-C-T 19481546-C-T BY134407 YY+
23476964-A-G 21315078-A-G BY145560 YY+
21931821-C-G 19769935-C-G YY+
7401217-G-A 7533176-G-A YY+
8404606-C-G 8536565-C-G BY72392 YY+
8619492-A-G 8751451-A-G BY52061 br1 YY+
8652417-C-T 8784376-C-T BY74949 YY+
22725467-A-G 20563581-A-G BY140330 YY+
8655283-C-A 8787242-C-A BY74976 YY+
22443846-G-C 20281960-G-C BY51722 DYZ19 +
7560710-G-A 7692669-G-A YY+
15717418-A-G 13605538-A-G BY103556 YY+
24498289-G-C 22352142-G-C BY150358 +
19061594-CA-C 16949714-CA-C +
18963618-CATAAA-C 16851738-CATAAA-C 5×ATAAA+
7187071-A-G 7319030-A-G BY63750 YY+
14031201-T-A 11910495-T-A BY92468 YY+
15990126-G-T 13878246-G-T BY105351 YY+
18224898-C-T 16113018-C-T BY121015 Y+
14937371-G-A 12825436-G-A BY98604 YY+
14582541-C-T 12470741-C-T BY96597 YY+
22199970-G-T 20038084-G-T BY138388 YY+
18281118-G-A 16169238-G-A BY121371 P6_Prx +
18664221-G-A 16552341-G-A BY122937 YY+
22300389-A-T 20138503-A-T DYZ19 *
10914726-T-C **
10906632-G-T **
10860755-T-A **
10885214-T-G **
10870851-C-A **
10872571-C-A **
10885135-T-A **
10885154-T-TTACAG **
10895719-A-T **
10899105-C-CCCTCA **
10982458-C-A **
10932812-C-A **
13512947-C-A 11357271-C-A **
14022140-T-G 11901434-T-G **
13985009-C-A 11864303-C-A **
13904106-G-T 11783400-G-T **
13702693-A-G 11547017-A-G **
13692538-T-C 11536862-T-C **
13642926-C-T 11487250-C-T **
13586069-T-G 11430393-T-G **
13311863-C-T 11156187-C-T FT200074 **
10950579-T-C **
13224642-T-G 11068966-T-G **
11034775-TTTCTA-T **
11031574-TC-T **
11021793-C-A **
11021714-C-A **
11003134-C-A **
10991105-C-A **
10839639-C-T **
10856520-T-A **
10669498-C-CTTTTTGATTCCA **
10839630-A-T **
7090599-G-T 7222558-G-T **
7631008-C-A 7762967-C-A **
7263726-T-G 7395685-T-G **
7259195-C-A 7391154-C-A **
7170760-A-G 7302719-A-G **
7111059-G-T 7243018-G-T **
7099212-A-T 7231171-A-T **
4001833-G-A 4133792-G-A **
7061284-T-C 7193243-T-C **
7775748-C-A 7907707-C-A **
6825647-G-T 6957606-G-T **
6815660-C-T 6947619-C-T **
6711749-C-A 6843708-C-A **
6669669-C-A 6801628-C-A **
6454654-G-T 6586613-G-T **
6321118-C-A 6453077-C-A IR3_Dst **
6321107-G-T 6453066-G-T IR3_Dst **
7768732-T-A 7900691-T-A **
7852469-C-A 7984428-C-A **
10817725-C-A **
10684220-A-T **
10817634-C-A **
10806449-T-G **
10766960-A-C **
10766494-T-G **
10764056-C-A **
10684237-T-TACTAC **
10684230-A-T **
14089647-G-T 11968941-G-T **
8085278-T-C 8217237-T-C **
10660618-C-T **
10648122-C-T **
10648060-T-A **
9952524-T-G 10114915-T-G **
9110875-G-T **
8848427-C-A 8980386-C-A **
8085278-T-TAA 8217237-T-TAA **
14073998-T-C 11953292-T-C **
21082306-AAG-A 18920420-AAG-A **
14121267-T-G 12000561-T-G **
22600332-T-C 20438446-T-C **
23563523-C-A 21401637-C-A **
23529945-C-A 21368059-C-A **
23484453-C-A 21322567-C-A **
23417246-C-A 21255360-C-A **
23080961-C-A 20919075-C-A **
22998685-A-G 20836799-A-G **
22624444-C-A 20462558-C-A **
22422806-C-A 20260920-C-A DYZ19 **
23824648-TC-T 21662762-TC-T **
22193363-G-T 20031477-G-T **
22095760-T-C 19933874-T-C **
21827887-T-G 19666001-T-G **
21665555-T-G 19503669-T-G **
21584129-T-C 19422243-T-C **
21139288-T-A 18977402-T-A **
21134892-T-C 18973006-T-C **
23596988-C-A 21435102-C-A **
23840220-C-A 21678334-C-A **
19733323-G-T 17621443-G-T P5_Prx **
26312165-A-T 24166018-A-T P1_Y1 **
56870138-C-A **
28764243-T-G 26618096-T-G **
28734681-C-A 26588534-C-A **
28633635-C-A 26487488-C-A **
28505553-C-A 26359406-C-A **
27495286-C-A 25349139-C-A P1_Y2 **
26312171-C-A 24166024-C-A P1_Y1 **
26312159-A-T 24166012-A-T P1_Y1 **
23848381-G-T 21686495-G-T **
26312156-A-T 24166009-A-T P1_Y1 **
26312128-A-T 24165981-A-T P1_Y1 **
26204525-G-T 24058378-G-T P1_Y1 **
26199660-T-A 24053513-T-A P1_Y1 **
26046003-T-A 23899856-T-A P1_Y1 **
25971366-C-A 23825219-C-A P1_Y1 **
24890029-G-T 22743882-G-T g1 **
21766277-ACACAC-A **
20041876-C-A 17929996-C-A P5_Prx **
19673507-A-C 17561627-A-C P5_Prx **
14198198-A-G 12077492-A-G **
16084397-C-A 13972517-C-A **
17045926-A-C 14934046-A-C **
16932869-TC-T 14820989-TC-T **
16410219-A-C 14298339-A-C **
16410209-A-C 14298329-A-C **
16305909-A-T 14194029-A-T **
16270310-A-T 14158430-A-T **
16241180-G-T 14129300-G-T **
15734268-T-A 13622388-T-A **
17277403-C-A 15165523-C-A **
6281028-T-A 6412987-T-A IR3_Dst **
15607930-C-A 13496050-C-A **
14520898-T-A 12409099-T-A **
14414758-C-A 12294055-C-A **
14356537-C-A 12235832-C-A **
14347929-T-A 12227224-T-A **
14331131-CTTTTTTTTT-C 12210425-CTTTTTTTTT-C 25×T**
14250102-A-G 12129396-A-G **
17213380-T-G 15101500-T-G **
17315039-A-G 15203159-A-G **
19673481-A-T 17561601-A-T P5_Prx **
18741574-C-A 16629694-C-A **
19346385-C-A 17234505-C-A **
19087949-A-T 16976069-A-T **
19087924-A-T 16976044-A-T **
18988455-C-A 16876575-C-A **
18937623-T-C 16825743-T-C **
18926735-C-A 16814855-C-A **
18812113-C-A 16700233-C-A **
18687770-T-C 16575890-T-C **
17491002-C-A 15379122-C-A **
18274890-AGGTG-A 16163010-AGGTG-A P6_Prx **
18274884-AT-A 16163004-AT-A P6_Prx **
18215863-A-C 16103983-A-C **
17882856-A-C 15770976-A-C **
17826170-C-A 15714290-C-A **
17735677-C-A 15623797-C-A **
17713887-T-C 15602007-T-C **
17692097-A-C 15580217-A-C **
6321100-C-A 6453059-C-A IR3_Dst **
7092467-G-A 7224426-G-A **
6276933-T-A 6408892-T-A IR3_Dst **
10801526-C-T **
17222753-C-A 15110873-C-A **
7224780-C-A 7356739-C-A **
24485692-G-T 22339545-G-T 13×TTATT**
15733548-A-C 13621668-A-C **
14108566-C-A 11987860-C-A **
7085192-C-A 7217151-C-A **
11021688-C-A **
22792529-C-A 20630643-C-A **
10669458-C-A **
6146424-C-A 6278383-C-A IR3_Dst **
22193262-G-T 20031376-G-T **
3627508-C-A 3759467-C-A **
16039334-C-A 13927454-C-A **
10882021-A-AGTATG **
16494353-C-A 14382473-C-A **
14384482-G-T 12263778-G-T **
21285480-C-A 19123594-C-A **
7238831-C-A 7370790-C-A **
17318792-C-A 15206912-C-A **
9978436-G-T 10140827-G-T **
6444871-T-C 6576830-T-C FGC80942 **
8237556-TA-T 8369515-TA-T 8×A**
16427290-C-A 14315410-C-A **
10956356-T-A **
18185307-C-T 16073427-C-T **
21152917-C-A 18991031-C-A **
15050048-C-A 12938139-C-A **
28593746-C-A 26447599-C-A **
6276912-T-A 6408871-T-A IR3_Dst **
13253878-C-A 11098202-C-A **
4505331-C-A 4637290-C-A **
14747376-C-CA 12635445-C-CA 9×A**
10684209-C-A **
5199735-C-A 5331694-C-A **
7181894-C-A 7313853-C-A **
6953467-C-A 7085426-C-A **
13349655-C-A 11193979-C-A **
10990457-C-A **
17151354-C-A 15039474-C-A **
13928408-C-A 11807702-C-A **
13460430-G-T 11304754-G-T **
10956673-C-A **
26199650-T-A 24053503-T-A P1_Y1 **
10797925-C-A **
4898034-C-A 5029993-C-A **
10676713-T-A **
10690265-G-T **
10888541-C-A **
10796668-ATTCCATTC-A **
10797920-C-A **
56835781-C-A **
16841898-C-A 14730018-C-A **
16411945-C-A 14300065-C-A **
10677405-C-A **
11656228-C-T FT200073 **
10669470-A-G **
10899062-C-A **
11019358-C-A **
4889305-C-A 5021264-C-A **
22436225-C-A 20274339-C-A BY29984 DYZ19 **
16800841-C-A 14688961-C-A **
21002535-TTCTC-T 18840649-TTCTC-T P4_Dst 16×TC**
13141118-C-T 10630604-C-T **
8387571-A-G 8519530-A-G 10×AGAAGG**
14532014-C-A 12420215-C-A **
17191576-C-A 15079696-C-A **
10828102-G-T **
19523575-C-A 17411695-C-A **
9194475-C-A 9356866-C-A **
19086224-C-A 16974344-C-A **
6806721-C-A 6938680-C-A **
7099210-C-A 7231169-C-A **
10885184-T-C **
24430237-C-A 22284090-C-A **
16560026-C-A 14448146-C-A **
4256927-C-A 4388886-C-A **
10648109-T-G **
18274889-C-T 16163009-C-T P6_Prx **
13946266-C-A 11825560-C-A **
10747038-C-T **
6767870-C-A 6899829-C-A **
28764247-C-A 26618100-C-A **
28589597-C-A 26443450-C-A **
19758840-C-A 17646960-C-A P5_Prx **
22974659-C-A 20812773-C-A **
13597414-C-A 11441738-C-A **
22046898-C-A 19885012-C-A **
27971693-C-A 25825546-C-A P1_Y2 **
6289367-A-AT 6421326-A-AT IR3_Dst **
15957030-C-A 13845150-C-A **
2757567-C-A 2889526-C-A **
3927646-C-A 4059605-C-A **
3920368-C-A 4052327-C-A **
3920272-C-A 4052231-C-A **
3804561-C-A 3936520-C-A **
3728130-C-A 3860089-C-A **
3680546-C-A 3812505-C-A **
3674922-C-A 3806881-C-A **
3007713-G-T 3139672-G-T **
56838417-C-A **
4275352-G-C 4407311-G-C **
10648073-A-G **
14587660-C-A 12475860-C-A **
23294138-C-A 21132252-C-A **
10856517-A-C **
10839631-A-C **
23504987-A-T 21343101-A-T **
26908661-C-A 24762514-C-A P1_r3 **
14539572-C-A 12427773-C-A **
10919242-A-G **
3966919-G-T 4098878-G-T **
4275354-T-C 4407313-T-C **
17372191-C-A 15260311-C-A **
5189629-T-C 5321588-T-C **
6276910-T-A 6408869-T-A IR3_Dst **
6276901-T-A 6408860-T-A IR3_Dst **
6276893-T-A 6408852-T-A IR3_Dst **
6194369-A-G 6326328-A-G IR3_Dst **
6050023-C-A 6181982-C-A **
5957206-T-C 6089165-T-C **
5603726-T-A 5735685-T-A **
5223698-C-A 5355657-C-A **
5189668-T-C 5321627-T-C **
5125169-G-T 5257128-G-T **
4275355-G-T 4407314-G-T **
5086803-G-T 5218762-G-T **
4899545-T-G 5031504-T-G **
4836156-G-T 4968115-G-T **
4667516-C-A 4799475-C-A **
4565424-G-T 4697383-G-T **
4350125-G-T 4482084-G-T **
4303768-G-T 4435727-G-T **
4282252-G-T 4414211-G-T **
4275356-T-C 4407315-T-C **
22757703-C-A 20595817-C-A **
10630623-C-A **
56877361-G-T **
4271177-C-A 4403136-C-A **
14800029-C-A 12688100-C-A **
23881852-G-T 21719966-G-T **
10937895-C-A **
13239423-C-A 11083747-C-A **
13643470-C-A 11487794-C-A **
13934952-C-A 11814246-C-A **
10952935-C-A **
8674155-C-A 8806114-C-A **
14606397-C-A 12494599-C-A **
4244820-C-A 4376779-C-A **
7866530-C-A 7998489-C-A **
18596204-C-A 16484324-C-A **
14180727-A-G 12060021-A-G **
18766716-C-A 16654836-C-A **
14440094-G-T 12319367-G-T **
14933713-C-A 12821778-C-A **
7986684-G-T 8118643-G-T **
14313571-C-A 12192865-C-A **
23005405-C-A 20843519-C-A **
28818130-CAAAGC-T 26671983-CAAAGC-T **
10975253-C-A **
24523493-C-A 22377346-C-A **
56835573-G-A ***
7438033-C-A 7569992-C-A ***
16528661-C-A 14416781-C-A ***
23190340-G-T 21028454-G-T ***
2862892-CA-C,CAA 2994851-CA-C,CAA 18×A***
7935855-TAAAAA-T 8067814-TAAAAA-T 22×A***
16213520-C-A 14101640-C-A ***
28551381-C-T 26405234-C-T ***
6856536-C-A 6988495-C-A ***
56842534-G-A ***
17374805-G-T 15262925-G-T ***
14626852-A-G 12514920-A-G ***
9423154-AAT-A 9585545-AAT-A ***
13457968-CTCCAC-C,CTCCGT 11302292-CTCCAC-C,CTCCGT ***
15677921-C-A 13566041-C-A ***
15351166-C-A 13239285-C-A ***
16629393-C-CT 14517513-C-CT 9×T***
22300707-A-G 20138821-A-G Z4981 DYZ19 ***
15303312-C-A 13191411-C-A ***
13593719-G-T 11438043-G-T ***
10842383-C-A ***
8034026-C-A 8165985-C-A ***
8172539-C-A 8304498-C-A ***
10866084-CCCAAT-C,CTCTGTTCCACT ***
18007673-C-A 15895793-C-A P7_Gap ***
18965642-CTTTTTTT-C,CTTTTTT 16853762-CTTTTTTT-C,CTTTTTT 19×T***
17816063-T-TTATATA 15704183-T-TTATATA 17×TA***
10762721-C-A ***
10693443-T-C ***
19268179-AT-A 17156299-AT-A ***
22201047-C-A 20039161-C-A ***
21884624-C-A 19722738-C-A ***
22039876-C-A 19877990-C-A ***
2688044-C-A 2820003-C-A ***
18757797-C-A 16645917-C-A ***
3641070-C-G 3773029-C-G ***
23338307-C-A 21176421-C-A ***
14065350-C-A 11944644-C-A ***
9864768-C-A 10027159-C-A ***
9730535-G-T 9892926-G-T IR3_Prx ***
10746961-T-C ***
9170218-G-T 9332609-G-T ***
9073348-C-CAA 9235739-C-CAA 12×A***
8817478-C-A 8949437-C-A ***
17029346-G-T 14917466-G-T ***
22441600-T-C 20279714-T-C DYZ19 ***
17004618-CAAAA-C,CAAAAA 14892738-CAAAA-C,CAAAAA 14×A***
16720500-T-A 14608620-T-A ***
18537917-C-A 16426037-C-A ***
15268925-C-A 13157014-C-A ***
22849491-CTTTTT-C,CTT 20687605-CTTTTT-C,CTT 20×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 491357912720874779747393540
Used in age calculations912720874779747393540
Counts of SNPs2124
Variant counts last updated 2020-03-31 02:49:35.



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