Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Blocks	Names	Region	McDonald BED	combBED	STR	BigY2 486483
6104364-A-G	6236323-A-G	V2488						A+
27982465-G-T	25836318-G-T			P1_Y2				A+
19797770-T-G	17685890-T-G			P5_Prx				A+
22291696-G-C	20129810-G-C		BY3720	DYZ19				A*
24611992-C-CA	22465845-C-CA			P3_t2			10×A	A*
28810397-G-C	26664250-G-C		BY48333					A*
	10776528-A-G							***
13451789-C-T	11296113-C-T							A*
	10759786-A-T		BY83765					A*
	10657272-T-C							A*
13451321-C-T	11295645-C-T							A*
13859894-G-T	11739188-G-T							A*
	10684195-A-ACCCCC							A*
13453228-C-CAA	11297552-C-CAA							A*
13859853-T-C	11739147-T-C							A*
28816996-T-A	26670849-T-A							A*
6279966-C-T	6411925-C-T			IR3_Dst				A*
13687923-A-G	11532247-A-G							A*
13859867-A-T	11739161-A-T							A*
19582206-C-A	17470326-C-A			P5_Prx	Y			A*
19761067-C-G	17649187-C-G			P5_Prx				A*
19828760-C-A	17716880-C-A			P5_Prx				A*
25891559-G-A	23745412-G-A			P1_Y1				A*
26178293-T-C	24032146-T-C		FGC39497	P1_Y1				A*
26204206-C-T	24058059-C-T			P1_Y1				A*
26457644-G-C	24311497-G-C			P1_Y1				A*
9850472-G-A	10012863-G-A	5543969-T-C	S12542		Y	Y		+
17575979-C-T	15464099-C-T		Z19530		Y	Y		+
22247332-C-A	20085446-C-A		BY208481	DYZ19				+
28741561-C-T	26595414-C-T	BY84417	FGC39730			Y		+
8522465-C-T	8654424-C-T		BY16037		Y	Y		+
15605973-T-C	13494093-T-C		Y50892		Y	Y		+
2727636-A-G	2859595-A-G		BY56059		Y	Y		+
2833436-T-C	2965395-T-C		BY56735		Y	Y		+
6736259-T-C	6868218-T-C				Y	Y		+
7410355-G-T	7542314-G-T		BY205828		Y	Y		+
7535247-C-A	7667206-C-A		BY65727		Y	Y		+
7571893-A-T	7703852-A-T		BY66008		Y	Y		+
7645824-C-T	7777783-C-T		BY66499		Y	Y		+
8235062-T-TA	8367021-T-TA							+
8688022-A-G	8819981-A-G				Y	Y		+
9012981-G-T	9175372-G-T					Y		+
13647185-CTTGAATGAAATACAT-C	11491509-CTTGAATGAAATACAT-C							+
13707015-C-A	11551339-C-A		FT449258					+
13812076-T-G	11691370-T-G							+
15268546-T-C	13156635-T-C				Y	Y		+
15361586-G-A	13249706-G-A		BY206964		Y	Y		+
15510734-T-C	13398854-T-C		BY102090		Y	Y		+
16132156-A-G	14020276-A-G							+
16391205-C-G	14279325-C-G		BY107451		Y	Y		+
16639626-GGC-G	14527746-GGC-G							+
16782626-T-C	14670746-T-C		BY37377		Y	Y		+
17205799-A-G	15093919-A-G		BY113032		Y	Y		+
17773125-T-G	15661245-T-G		FT181203		Y	Y		+
17910231-TTATGTAGAAATTTTGATTAG-T	15798351-TTATGTAGAAATTTTGATTAG-T							+
18465334-A-G	16353454-A-G		BY207793	P6_Dst				+
19004158-C-T	16892278-C-T				Y	Y		+
19446236-A-T	17334356-A-T		BY129110		Y	Y		+
19453917-G-T	17342037-G-T		BY129206		Y	Y		+
21566683-T-C	19404797-T-C				Y	Y		+
22073534-C-T	19911648-C-T				Y	Y		+
22159195-A-G	19997309-A-G		BY208444		Y	Y		+
22201976-AG-A	20040090-AG-A							+
22464400-T-A	20302514-T-A		BY208530	DYZ19				+
22664419-G-A	20502533-G-A		BY139879		Y	Y		+
23113831-TG-T	20951945-TG-T							+
23307229-T-G	21145343-T-G				Y	Y		+
23485761-A-C	21323875-A-C				Y	Y		+
23804139-C-T	21642253-C-T		BY147833			Y		+
23997847-C-T	21851700-C-T		BY208980		Y			+
24380253-G-T	22234106-G-T		BY149474			Y		+
24426284-T-C	22280137-T-C					Y		+
	27833-A-T							+
8426377-G-GCTTCTT	8558336-G-GCTTCTT						22×CTT	*
13709270-G-A	11553594-G-A		BY47685					*
21317043-AATAC-A	19155157-AATAC-A						11×ATAC	*
13714841-A-AGAATG	11559165-A-AGAATG						7×GAATG	*
22255072-T-C	20093186-T-C			DYZ19				*
23608987-G-GGCTTAGGTGA	21447101-G-GGCTTAGGTGA							*
26073058-CTG-C	23926911-CTG-C			P1_Y1			14×TG	**
58848239-G-C	56742632-C-G							**
13461292-T-C	11305616-T-C							**
13461328-G-T	11305652-G-T							**
15424639-GA-G	13312759-GA-G						10×A	**
13878588-GAA-G	11757882-GAA-G						11×A	**
24417006-AAAAGAAAGAAAG-A	22270859-AAAAGAAAGAAAG-A						18×AAAG	**
22309880-T-A	20147994-T-A		A4110	DYZ19				**
13801173-GAACTC-G	11680467-GAACTC-G							**
22340078-A-G	20178192-A-G		BY217535	DYZ19				**
13488972-C-T	11333296-C-T							**
13461283-G-A	11305607-G-A							**
59003750-T-TAAA	56857603-T-TAAA						11×A	**
13461329-C-G	11305653-C-G							**
13857439-TGGAATGGAAG-T	11736733-TGGAATGGAAG-T							**
19377496-AAG-A	17265616-AAG-A							**
16786213-CTTTTTT-C	14674333-CTTTTTT-C						22×T	**
26383340-CTT-C	24237193-CTT-C			P1_Y1			16×T	**
16729299-C-A	14617419-C-A							**
19753403-CTT-C	17641523-CTT-C			P5_Prx			19×T	**
59001068-G-T	56854921-G-T							**
59017649-C-T	56871502-C-T							**
20404505-C-A	18242619-C-A			P5_Dst				**
20101729-C-T	17989849-C-T		BY31597	P5_Dst				**
8501634-CTCT-C	8633593-CTCT-C						5×TCT	**
18636612-C-CT	16524732-C-CT						17×T	**
22309875-G-T	20147989-G-T			DYZ19				**
22101002-CAA-C	19939116-CAA-C						27×A	**
13461312-C-T	11305636-C-T							**
13466350-A-G	11310674-A-G							**
16056972-A-AAAAC	13945092-A-AAAAC						7×AAAC	**
13461249-T-C	11305573-T-C							**
	10926429-A-T							**
	10926437-A-G							**
16102021-TTG-T	13990141-TTG-T			P8_Prx				**
	10768676-T-G							**
	10791336-A-C							**
	10787564-C-G							**
	10927384-C-T							**
15128121-CTTTT-C	13016208-CTTTT-C						18×T	**
	10768932-T-C							**
	10952172-C-T							**
	10952184-C-A							**
	10952187-A-T							**
	10952191-C-A							**
	10952195-C-A							**
	10952196-CA-C							**
	10952202-C-T							**
	10952205-C-A							**
27861909-T-A	25715762-T-A			P1_Y2				**
	10926391-T-C							**
13705474-A-T	11549798-A-T						10×GGAAT	**
26098022-A-G	23951875-A-G			P1_Y1			8×AG	**
	10781148-A-T							**
	10781149-A-T							**
	10928875-C-A							**
	11013872-T-C							**
	10925470-A-T							**
	10925478-C-G							**
	10975758-T-G							**
	10776137-C-T							**
	10926483-T-C							**
	10885226-C-CT							**
	10885235-C-T							**
	10885246-C-T							**
	10885268-T-C							**
	10789960-C-T							**
5213967-A-G	5345926-A-G							**
	10801386-G-C							**
	10801493-A-T							**
9639183-CTT-C	9801574-CTT-C			IR3_Prx			12×T	**
	10928796-CTCCACTCCTT-C							**
	10928843-T-A							**
	10928849-C-T							**
	10928853-C-G							**
	10928861-T-G							**
	10928864-C-A							**
	10693653-C-A							**
	10820365-G-T		FT189855					**
	10928882-T-G							**
	10928883-T-C							**
	10928892-C-T							**
17136931-CTTT-C	15025051-CTTT-C						18×T	**
	10793938-C-G							**
	10793951-C-T							**
	10793952-A-G		FT431467					**
	10793954-C-T							**
	10793966-C-A							**
	10793969-T-TTCATC							**
	10793993-C-T							**
	10793995-A-C							**
6233756-C-A	6365715-C-A			IR3_Dst				**
	10932777-T-C							**
	10667023-C-G							**
	10776139-C-A							**
	10988857-T-C							**
	10776199-C-G							**
	10791278-A-C							**
	10845668-T-C							**
	10767913-T-G							**
	10767921-C-A							**
	10767948-T-C							**
	10767963-T-A							**
	10942629-T-G							**
	10942631-T-A							**
	10942654-T-C							**
	56847140-C-G							**
	10790219-C-A							**
	10924389-C-T							**
	10776167-C-T							**
	10987029-A-C							**
	10987030-T-TTA							**
	10761791-A-T							**
	11025525-A-T							**
	11025534-C-T		FT439997					**
	11025553-C-A							**
	11025559-C-A							**
	10781037-T-TATTCC							**
16341055-C-A	14229175-C-A							**
5698853-G-T	5830812-G-T							**
	10673820-T-C							**
	10998428-T-A							**
	10998430-C-T							**
	10664800-C-CACACCACTAA							**
	10804476-C-T							**
	10770709-G-T							**
	10937393-T-G							**
	10937394-C-G							**
	10983967-T-C							**
	56756912-T-A							**
	10900046-T-A							**
	10956080-A-C							**
	10924386-C-G							**
6882450-C-A	7014409-C-A							**
	12288301-CTTTTT-C						19×T	**
28006374-AC-A	25860227-AC-A			P1_Y2				**
13461229-C-A	11305553-C-A							**
13461231-G-A	11305555-G-A							**
13461263-C-A	11305587-C-A							**
13461277-C-A	11305601-C-A		F18164					**
13461326-A-T	11305650-A-T							**
13461330-C-G	11305654-C-G							**
16747431-C-CT	14635551-C-CT						9×T	**
7187833-C-A	7319792-C-A							**
9571870-GT-G	9734261-GT-G			IR3_Prx				**
	10926408-C-T							**
6265032-TCA-T	6396991-TCA-T			IR3_Dst				**
	10973929-A-C							**
	10983969-C-CCGCTT							**
	10983978-T-G							**
	10983979-C-G							**
	10983999-C-T							**
	56850392-G-T							**
	11026005-C-T							**
28818019-A-T	26671872-A-T							**
	10938369-G-T		FGC81306					**
	10663278-C-A							**
	10988866-A-T		FT439363					**
19510291-TG-T	17398411-TG-T							**
20802737-C-A	18640851-C-A			P4_Gap				**
	10768644-G-T							**
15677246-A-C	13565366-A-C							**
13898754-G-GTTT	11778048-G-GTTT						26×T	**
	10926400-G-T							**
	10926403-T-C							**
	10926413-T-C							**
	10926415-C-T							**
	10926430-A-C							**
	10926436-C-T							**
	10926443-A-T							**
	10926446-A-C							**
	10926475-A-C							**
	10764156-C-A							**
24624535-TTG-T	22478388-TTG-T			P3_t2			10×TG	**
	10978074-G-T							**
7532276-GTATATATATATATATATATATATATATATATATATA-G	7664235-GTATATATATATATATATATATATATATATATATATA-G						28×TA	**
19499096-C-A	17387216-C-A							**
	11037134-T-C							**
27847762-GT-G	25701615-GT-G			P1_Y2				**
	10790213-T-C							**
9945664-C-A	10108055-C-A							**
20989154-CATATATATATATAT-C	18827268-CATATATATATATAT-C			P4_Dst			19×AT	**
	10788941-G-T							**
	10776151-A-ATTCCT							**
	10776170-C-CACTAG							**
	10982802-C-A							**
	10973947-C-A							**
25990666-C-A	23844519-C-A			P1_Y1				**
	10768649-ATTCCAATCCATTCTT-A							**
28700572-C-A	26554425-C-A							**
	10988877-T-C							**
	10845655-C-A							**
	10845656-C-T							**
	10973948-C-A							**
14229892-C-A	12109186-C-A							**
15789135-C-A	13677255-C-A		FTB7081					**
	10790220-A-AATC							**
	10790223-C-CTT							**
	10942619-C-A							**
14795046-A-T	12683117-A-T							**
23790311-C-A	21628425-C-A							**
	10858775-C-A							**
13461301-G-T	11305625-G-T							**
	10827951-T-G							**
13461278-C-A	11305602-C-A							**
18747134-C-T	16635254-C-T							**
15566817-GAAAAA-G	13454937-GAAAAA-G						22×A	**
	11013849-G-A		FGC80875					**
	11013855-C-T							**
	10761793-T-TG							**
	10791295-C-G							**
	10791302-ACTCCT-A							**
22855394-G-T	20693508-G-T							**
5243390-C-A	5375349-C-A							**
	10767477-C-A							**
19125642-C-T	17013762-C-T							**
	10812052-G-A							**
9116743-G-T	9279134-G-T							**
18747070-C-T	16635190-C-T							**
	10912149-C-G							**
22518511-C-A	20356625-C-A							**
	12826705-GAAAA-G						18×A	**
	10983962-T-TTTCAC							**
	10985890-A-T							**
14324347-C-A	12203641-C-A							**
	10994729-C-A							**
	10683891-T-C							**
22420389-T-G	20258503-T-G			DYZ19				**
	11020910-C-A							**
20815589-C-A	18653703-C-A			P4_Gap				**
	10889825-C-A							**
23439054-ATTT-A	21277168-ATTT-A						10×T	**
22767328-C-A	20605442-C-A							**
5213970-C-T	5345929-C-T							**
6294748-A-AC	6426707-A-AC			IR3_Dst				**
13846859-C-A	11726153-C-A		FT109142					**
13301316-C-A	11145640-C-A							**
13255580-C-T	11099904-C-T							**
13556781-C-A	11401105-C-A							**
	11024453-CTCCAT-C	BY82600						**
6816608-C-T	6948567-C-T							**
6816609-C-G	6948568-C-G							**
22076112-GA-G	19914226-GA-G							**
15732795-C-A	13620915-C-A							**
	56871593-A-G							**
	10929229-T-C							**
7148192-C-A	7280151-C-A							**
15997490-C-A	13885610-C-A							**
	10804468-C-A							**
	10956072-C-T							**
8109879-G-C	8241838-G-C							**
20707584-C-A	18545698-C-A			P4_Prx				**
	10841059-T-G							**
	56850423-C-T							**
22309896-C-CAAAA	20148010-C-CAAAA			DYZ19				**
28662474-G-T	26516327-G-T							**
5426390-C-CTT	5558349-C-CTT						17×T	**
	10759565-C-A							**
	10944688-TCAC-T							**
	10944701-C-G							**
	10942537-C-A							**
23188574-C-A	21026688-C-A							**
5871898-C-A	6003857-C-A							**
	10885008-T-A							**
23364233-C-A	21202347-C-A							**
15495346-T-C	13383466-T-C							**
5824817-C-A	5956776-C-A							**
	10889805-C-A							**
16430168-C-A	14318288-C-A							**
	10978088-T-G							**
15918566-C-A	13806686-C-A							**
18747079-G-A	16635199-G-A							**
13603168-C-A	11447492-C-A							**
4557512-C-A	4689471-C-A							**
18430094-CAAA-C	16318214-CAAA-C			P6_Dst			28×A	**
17802224-G-T	15690344-G-T							**
7108900-C-A	7240859-C-A							**
23439048-T-C	21277162-T-C							**
13490315-C-A	11334639-C-A							**
4174962-CTTTTTTT-C	4306921-CTTTTTTT-C						31×T	**
13939010-C-A	11818304-C-A							**
18747094-C-T	16635214-C-T							**
	10946658-A-C							**
	10825347-C-A							**
15495356-A-C	13383476-A-C							**
15495359-T-A	13383479-T-A							**
3229175-G-GA	3361134-G-GA							**
	10673814-A-T							**
5852771-C-A	5984730-C-A							**
22103889-C-A	19942003-C-A							**
4769506-C-A	4901465-C-A							**
	11027757-C-A							**
	10889818-T-G							**
	10820420-C-A							**
	10892514-A-C							**
19673740-C-A	17561860-C-A			P5_Prx				**
15677244-T-C	13565364-T-C							**
21861458-T-G	19699572-T-G							**
25466632-G-T	23320485-G-T			P2_r2				**
13303393-A-C	11147717-A-C							**
16113463-C-T	14001583-C-T			P8_Prx				**
16113479-A-C	14001599-A-C			P8_Prx				**
	10974494-C-A							**
14073260-C-A	11952554-C-A							**
22810732-A-T	20648846-A-T							**
28491992-C-A	26345845-C-A							**
15495342-C-T	13383462-C-T							**
9868078-C-A	10030469-C-A							**
	11668283-C-T							**
18747111-G-A	16635231-G-A							**
5155046-G-T	5287005-G-T							**
6233726-T-TCACA	6365685-T-TCACA			IR3_Dst			13×CA	**
	10664503-C-A							**
6535409-C-A	6667368-C-A							**
3223678-G-T	3355637-G-T							**
3331095-T-C	3463054-T-C							**
3553868-C-A	3685827-C-A							**
4010126-C-A	4142085-C-A							**
4230323-G-T	4362282-G-T							**
4306386-C-A	4438345-C-A							**
4511190-G-A	4643149-G-A							**
5112738-C-A	5244697-C-A							**
5194284-G-T	5326243-G-T							**
5214057-A-C	5346016-A-C							**
5214060-T-G	5346019-T-G							**
5359980-C-A	5491939-C-A							**
5388165-C-A	5520124-C-A							**
5510607-G-T	5642566-G-T							**
5524314-T-C	5656273-T-C							**
5785757-C-A	5917716-C-A							**
5880856-G-T	6012815-G-T							**
6215917-G-T	6347876-G-T			IR3_Dst				**
6221708-G-T	6353667-G-T			IR3_Dst				**
6368956-T-C	6500915-T-C							**
6427349-C-A	6559308-C-A							**
6682531-G-T	6814490-G-T							**
7100584-G-C	7232543-G-C							**
7156584-G-A	7288543-G-A							**
7363249-C-A	7495208-C-A							**
7451177-C-A	7583136-C-A			IR1_L				**
7646661-C-A	7778620-C-A							**
7650453-CA-C	7782412-CA-C							**
8110667-T-G	8242626-T-G							**
8978882-T-G	9141273-T-G							**
9015456-C-A	9177847-C-A							**
9870132-C-G	10032523-C-G							**
9929250-C-A	10091641-C-A							**
9975346-T-C	10137737-T-C							**
	10685410-G-T							**
	10692458-T-C							**
	10757592-C-T							**
	10761781-C-T							**
	10769013-C-A							**
	10790525-T-C							**
	10802624-C-A							**
	10804038-T-G							**
	10842090-A-T		FT91845					**
	10844572-C-A							**
	10858767-A-T							**
	10874620-C-A							**
	10898276-T-C							**
	10899429-C-A							**
	10900035-A-C							**
	10900042-T-A							**
	10900049-C-A							**
	10900062-A-T							**
	10900077-G-C							**
	10942641-C-T							**
	10942646-C-G							**
	10973285-C-A							**
	10977723-C-A							**
	10978051-C-G							**
	10978078-T-C							**
	10978715-C-A							**
	11004726-G-T							**
	11026964-C-A							**
	11037098-C-A							**
13222246-G-GAA	11066570-G-GAA							**
13485683-T-C	11330007-T-C							**
13586106-G-A	11430430-G-A		FT225285					**
13721354-A-G	11565678-A-G		BY211371					**
13743028-C-T	11587352-C-T							**
13743032-A-G	11587356-A-G							**
	11664282-A-T							**
	11665142-A-T							**
13856303-AAATGGAATGGAATGGAATGGAATGGAATGGAATGG-A	11735597-AAATGGAATGGAATGGAATGGAATGGAATGGAATGG-A						15×AATGG	**
13895900-C-A	11775194-C-A							**
13930006-G-C	11809300-G-C							**
13930007-T-C	11809301-T-C							**
13953320-C-A	11832614-C-A							**
13953716-G-T	11833010-G-T							**
13986549-C-A	11865843-C-A							**
13990114-T-C	11869408-T-C		FT138198					**
14296911-G-T	12176205-G-T							**
14329535-T-C	12208829-T-C							**
14382351-G-T	12261647-G-T							**
14385575-C-A	12264871-C-A							**
14423850-C-T	12303125-C-T							**
14462556-T-G	12341829-T-G							**
14474572-C-A	12353841-C-A							**
	12377459-C-G							**
14518679-A-C	12406880-A-C							**
14533012-G-A	12421213-G-A							**
14539325-T-G	12427526-T-G							**
14565708-C-T	12453908-C-T							**
14566513-C-A	12454713-C-A							**
14715783-G-T	12603850-G-T							**
14798682-G-A	12686753-G-A							**
14989228-A-G	12877313-A-G							**
	12877284-TAAAAAAAAAAAAAAAA-T						46×A	**
15156139-C-A	13044226-C-A							**
15386720-G-A	13274840-G-A							**
15495366-T-A	13383486-T-A							**
15578285-T-C	13466405-T-C		FT138853					**
16005321-C-A	13893441-C-A							**
16432634-T-G	14320754-T-G							**
16623347-C-A	14511467-C-A							**
16896492-A-G	14784612-A-G							**
17534953-A-G	15423073-A-G							**
18422706-C-T	16310826-C-T			P6_Gap				**
18710221-C-A	16598341-C-A							**
18747105-G-T	16635225-G-T							**
18747144-A-AT	16635264-A-AT							**
18747154-A-T	16635274-A-T							**
18928797-G-A	16816917-G-A							**
19013911-C-A	16902031-C-A							**
19187446-CTTTTTTTTTTTT-C	17075566-CTTTTTTTTTTTT-C						34×T	**
19356340-G-A	17244460-G-A		FT48203					**
21386992-C-A	19225106-C-A							**
21387100-T-G	19225214-T-G							**
21493817-CT-C	19331931-CT-C							**
21503149-A-C	19341263-A-C							**
21677312-G-T	19515426-G-T							**
22022685-T-G	19860799-T-G							**
22050095-C-A	19888209-C-A							**
22134402-G-T	19972516-G-T							**
22427934-A-T	20266048-A-T			DYZ19				**
22857300-C-A	20695414-C-A							**
23439034-CCTG-C	21277148-CCTG-C							**
23439044-C-CTAT	21277158-C-CTAT							**
23439060-T-A	21277174-T-A							**
23495724-C-A	21333838-C-A							**
24221000-C-A	22074853-C-A			P3_b1				**
24485917-C-A	22339770-C-A							**
24583531-G-T	22437384-G-T			P3_t2				**
26393012-C-T	24246865-C-T			P1_Y1				**
27534291-CAA-C	25388144-CAA-C			P1_Y2			15×A	**
28105595-A-AT	25959448-A-AT			P1_Y2				**
28518917-C-T	26372770-C-T							**
28526680-G-T	26380533-G-T							**
	20758-T-A							**
	24950-C-A							**
13487703-C-T	11332027-C-T							***
21261826-T-TA	19099940-T-TA						26×A	***
3648793-CA-C	3780752-CA-C						9×A	***
58979274-A-T	56833127-A-T							***
28792975-TGGAAT-G	26646828-TGGAAT-G							***
6402366-C-A	6534325-C-A							***
17187600-C-A	15075720-C-A							***
9774441-CT-C	9936832-CT-C							***
8751076-GTATA-G	8883035-GTATA-G						10×TA	***
5393294-GGAAGAA-G	5525253-GGAAGAA-G						10×GAA	***
18864946-GAA-G	16753066-GAA-G						19×A	***
6719441-TAA-T	6851400-TAA-T						14×A	***
	10753518-T-C							***
	10986854-T-C							***
18592167-CAAA-C	16480287-CAAA-C						18×A	***
	10787572-C-A							***
	10787575-C-T							***
	10764549-TC-T,TG							***
13485665-T-C	11329989-T-C							***
	10877819-A-G		FT435165					***
	10801765-T-A							***
25592861-ACTCT-A,ACT	23446714-ACTCT-A,ACT			P1_gr1			20×CT	***
	11023104-G-T							***
3833652-CAAA-C	3965611-CAAA-C						16×A	***
	10988628-T-C							***
	10775061-T-A,G							***
15422098-CAAA-C	13310218-CAAA-C						20×A	***
	11022088-C-G							***
	11022090-C-T							***
22723386-CAA-C	20561500-CAA-C						17×A	***
	10984531-T-A							***
	10796641-C-A							***
13461068-A-G	11305392-A-G							***
58848171-A-T	56742700-T-A							***
	10877842-C-G							***
	10877843-C-A							***
15352141-TAA-T,TA	13240260-TAA-T,TA						13×A	***
	10973935-T-C							***
	10973996-C-T							***
18653684-CAAAA-C	16541804-CAAAA-C						20×A	***
22768348-TA-T,TAA	20606462-TA-T,TAA						17×A	***
	10692141-A-G,T							***
6445040-C-A	6576999-C-A							***
17713850-CTTT-C	15601970-CTTT-C						23×T	***
	10759782-C-T		DC707					***
	10877346-T-A							***
	10877349-A-C							***
	10877350-T-C							***
	10877361-T-C							***
	10877362-T-C							***
	10877365-T-C							***
	10877367-G-C							***
	10765743-T-A							***
7270276-CTTTTTT-C	7402235-CTTTTTT-C						25×T	***
	10654383-C-A,G							***
	10999930-T-A							***
	10989878-C-A							***
21656810-C-A	19494924-C-A							***
14471469-CTTTT-C	12350738-CTTTT-C						19×T	***
	56833310-CCAT-C							***
17375898-G-T	15264018-G-T							***
8462064-CAAAAAAAAAAA-C	8594023-CAAAAAAAAAAA-C						26×A	***
	10977158-C-A							***
6445042-C-A	6577001-C-A							***
	10653479-A-C							***
	10653490-T-A							***
	10868788-CATTCCATTCA-C,CATTCCATTTC							***
	10868823-C-A,T							***
23009498-C-A	20847612-C-A							***
	10984501-A-C,G							***
	10927403-A-G,T							***
	10785600-C-A							***
	10868818-A-C,T							***
18191873-G-A	16079993-G-A							***
8641323-AA-A,AG	8773282-AA-A,AG							***
	10814458-C-A							***
13227882-C-A	11072206-C-A							***
7780430-C-A	7912389-C-A							***
9077081-A-G	9239472-A-G							***
	10785279-A-ATTCGTGTTGAATCTT							***
	10796672-C-CGTTGTATTCGGGTTA							***
	10947238-C-A							***
	10987212-CATTCCATTCC-C,CATTCCATTCA							***
	11645425-A-G							***
	11663438-A-G							***
15143797-C-A	13031884-C-A							***
16229835-A-G	14117955-A-G							***
16354733-T-C	14242853-T-C							***
18050143-A-G	15938263-A-G							***
18263612-G-A	16151732-G-A							***
21961703-C-A	19799817-C-A							***
21969804-C-A	19807918-C-A							***
22591658-T-C	20429772-T-C							***
23480486-G-T	21318600-G-T							***
28719430-A-G	26573283-A-G							***
	14344-A-T							***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Kornmann

Tree Position

Unique Mutations