Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > CTS1751 > Z17966 > Y18513

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
485969
19695746-C-G 17583866-C-G P5_Prx A+
19616382-T-G 17504502-T-G P5_Prx YA*
20627184-G-A 18465298-G-A P4_Prx A*
22310063-T-C 20148177-T-C DYZ19 A*
13452240-A-T 11296564-A-T A*
19704811-G-A 17592931-G-A P5_Prx A*
6163619-C-A 6295578-C-A IR3_Dst A*
18284256-C-T 16172376-C-T P6_Prx A*
25525683-G-A 23379536-G-A P1_gr1 A*
24311091-C-T 22164944-C-T P3_t1 A*
13687748-C-A 11532072-C-A A*
19606086-T-G 17494206-T-G P5_Prx YA*
25958246-G-T 23812099-G-T P1_Y1 A*
20758783-C-T 18596897-C-T P4_Prx A*
13651308-G-A 11495632-G-A BY210609 +
2888614-C-T 3020573-C-T FGC16203 Y8816 F8520 YY+
20831309-A-G 18669423-A-G BY212736 P4_Gap +
2888674-A-G 3020633-A-G YY+
21514286-A-C 19352400-A-C BY204158 YY+
21749343-C-T 19587457-C-T BY204213 YY+
21751469-G-A 19589583-G-A BY204214 YY+
21928764-GGTT-G 19766878-GGTT-G +
15680693-TAA-T 13568813-TAA-T +
21192759-G-A 19030873-G-A BY204094 YY+
6938981-G-A 7070940-G-A BY202503 YY+
13843539-G-A 11722833-G-A BY203020 +
16819033-G-A 14707153-G-A BY203518 YY+
8515262-A-G 8647221-A-G BY202805 YY+
8471644-T-C 8603603-T-C BY202789 YY+
8403170-GTTTGTTTTGT-G 8535129-GTTTGTTTTGT-G 5×TTTGT+
8188817-G-A 8320776-G-A BY202710 YY+
16243400-G-C 14131520-G-C BY203416 YY+
8662133-G-A 8794092-G-A Y47709 YY+
9927984-C-A 10090375-C-A BY209382 Y+
16894220-G-A 14782340-G-A BY203534 YY+
23183377-G-T 21021491-G-T BY204462 Y+
17457744-G-T 15345864-G-T BY203657 YY+
14515386-T-C 12403587-T-C BY211489 YY+
14477571-C-T 12356840-C-T BY203151 YY+
17996712-G-T 15884832-G-T BY203767 P7_Gap Y+
14315832-C-T 12195126-C-T BY203122 YY+
14026090-G-C 11905384-G-C BY203048 YY+
19520535-G-A 17408655-G-A BY204054 YY+
22440541-C-T 20278655-C-T BY196875 DYZ19 +
22281089-AC-A 20119203-AC-A DYZ19 *
22289078-G-A 20127192-G-A Y11179 DYZ19 *
10911215-G-T **
13938015-C-A 11817309-C-A **
10779923-T-G **
10780494-A-AAAT **
13966878-A-T 11846172-A-T **
13966875-C-A 11846169-C-A **
10788494-TACATG-T **
13859412-AT-A 11738706-AT-A **
13860936-A-T 11740230-A-T **
10773121-C-T **
10788508-T-C **
11669702-A-C **
10805441-T-G **
10807814-C-T **
11658039-A-G **
14183230-T-A 12062524-T-A **
14462633-G-T 12341906-G-T **
10811320-C-A **
10772674-T-C **
10772660-C-G **
10772649-T-G **
14598629-C-G 12486829-C-G **
14711877-A-C 12599944-A-C **
10772105-C-A **
10758080-C-G **
10684552-C-A **
14888139-G-C 12776205-G-C **
14912707-A-C 12800774-A-C **
15109659-A-C 12997746-A-C **
15252788-CAA-C 13140874-CAA-C **
15402032-GAAGAA-G 13290152-GAAGAA-G **
15420197-C-A 13308317-C-A **
10808706-C-A **
10821180-CACTAT-C **
10929913-C-A **
10978854-A-C **
10986448-C-G **
10982637-A-G **
10982630-C-G **
10864994-A-T **
10866608-T-C **
10872869-C-T **
10973445-A-G **
11011677-C-CTATCCACTCT **
10958972-A-T **
10949760-T-G **
10944526-C-T **
10886465-CCATTCCATT-C **
10942584-C-A **
10942571-C-A **
10996003-T-G **
11019758-C-T **
13639969-A-C 11484293-A-C **
13308897-A-T 11153221-A-T **
10822978-T-C **
13596981-A-G 11441305-A-G **
10824159-T-A **
10824208-ATTC-A **
10824214-C-CAG **
13460953-G-A 11305277-G-A **
11035906-A-T **
10847674-A-C **
10829274-T-A **
10829299-T-A **
11030796-C-T **
10829303-ACTCCACTCCC-A **
10844590-A-T **
11024860-ATTGTT-A **
15677247-C-A 13565367-C-A **
17858877-G-T 15746997-G-T **
15775789-G-T 13663909-G-T **
24240677-T-C 22094530-T-C P3_b1 **
24491413-C-T 22345266-C-T **
24491408-A-G 22345261-A-G **
24491373-G-A 22345226-G-A **
24406989-C-A 22260842-C-A **
24406314-G-T 22260167-G-T **
24384198-T-C 22238051-T-C **
24240786-G-T 22094639-G-T P3_b1 **
24052438-A-G 21906291-A-G P3_b1 **
24491447-G-A 22345300-G-A **
23465437-A-G 21303551-A-G **
23439902-T-G 21278016-T-G **
23419665-G-T 21257779-G-T **
23401444-G-A 21239558-G-A **
23352221-A-G 21190335-A-G **
23208142-T-C 21046256-T-C **
23208129-A-C 21046243-A-C **
23184706-CT-C 21022820-CT-C **
24491429-C-T 22345282-C-T **
24491463-T-C 22345316-T-C **
23046070-C-A 20884184-C-A **
26152249-C-A 24006102-C-A P1_Y1 **
56823308-A-G **
56705908-A-ATACAT **
56705876-G-A **
28699702-T-G 26553555-T-G **
28644390-T-A 26498243-T-A **
28491053-T-G 26344906-T-G **
27620720-C-G 25474573-C-G P1_Y2 **
27583141-C-A 25436994-C-A P1_Y2 **
26098027-A-T 23951880-A-T P1_Y1 **
24491464-G-A 22345317-G-A **
25985332-A-C 23839185-A-C P1_Y1 **
25886182-A-C 23740035-A-C P1_Y1 **
24582371-A-C 22436224-A-C P3_t2 **
24491498-A-G 22345351-A-G **
24491496-G-T 22345349-G-T **
24491483-A-G 22345336-A-G **
24491474-G-A 22345327-G-A **
24491470-C-T 22345323-C-T **
23184464-G-T 21022578-G-T **
23004845-T-G 20842959-T-G **
15871698-A-C 13759818-A-C **
5815484-T-C 5947443-T-C **
19558862-T-G 17446982-T-G **
19479286-C-A 17367406-C-A **
19294064-C-A 17182184-C-A **
18480066-T-G 16368186-T-G P6_Dst **
18270391-T-G 16158511-T-G **
18184876-A-G 16072996-A-G **
18089115-G-T 15977235-G-T **
17794154-T-C 15682274-T-C **
19580331-A-T 17468451-A-T P5_Prx **
17728599-T-G 15616719-T-G **
17505255-A-T 15393375-A-T **
16681662-T-G 14569782-T-G **
16180527-A-C 14068647-A-C **
16052877-T-G 13940997-T-G **
16044920-A-C 13933040-A-C **
15969983-A-C 13858103-A-C **
15967510-TTTTTTTTG-T 13855630-TTTTTTTTG-T **
19577978-G-T 17466098-G-T P5_Prx **
19580339-A-T 17468459-A-T P5_Prx **
22843731-T-A 20681845-T-A **
21851711-C-A 19689825-C-A **
22732834-A-C 20570948-A-C **
22520824-A-C 20358938-A-C **
22164428-G-C 20002542-G-C **
22149932-C-A 19988046-C-A **
22101026-A-C 19939140-A-C **
22100844-G-A 19938958-G-A **
22100841-G-A 19938955-G-A **
21945238-A-C 19783352-A-C **
21534767-A-G 19372881-A-G **
19580340-A-T 17468460-A-T P5_Prx **
21455500-C-T 19293614-C-T **
21383189-T-C 19221303-T-C **
21380214-T-G 19218328-T-G **
21238337-T-C 19076451-T-C **
20757615-T-G 18595729-T-G P4_Prx **
20574835-T-C 18412949-T-C P5_Dst **
19839617-A-C 17727737-A-C P5_Prx **
19668814-A-C 17556934-A-C P5_Prx **
9330573-A-C 9492964-A-C **
9330514-A-C 9492905-A-C **
9116857-T-G 9279248-T-G **
8085589-C-T 8217548-C-T **
10753305-C-A **
15235485-TTTTTTTTTC-T 13123571-TTTTTTTTTC-T **
3990503-T-TA 4122462-T-TA **
11674674-G-T **
10766471-C-A **
14540758-G-T 12428959-G-T **
10772672-A-T **
8085604-G-A 8217563-G-A **
7134705-C-A 7266664-C-A **
11001743-C-A **
6328308-C-CGCAA 6460267-C-CGCAA IR3_Dst **
11008837-C-A **
10826182-A-T **
11024898-T-C **
11024896-C-T **
24607323-T-TG 22461176-T-TG P3_t2 **
11034506-C-A **
16692786-A-C 14580906-A-C **
10824219-CTCAGT-C **
14550110-C-A 12438311-C-A **
22811130-C-A 20649244-C-A **
16545414-CAAAAAAAA-C 14433534-CAAAAAAAA-C 24×A**
14735166-C-A 12623234-C-A **
3275533-G-T 3407492-G-T **
10829269-A-C **
9025512-A-C 9187903-A-C **
10815803-C-A **
9937001-C-A 10099392-C-A **
23142583-C-A 20980697-C-A BY143320 **
14571251-C-A 12459451-C-A **
10750791-T-A **
16411312-C-A 14299432-C-A **
14023080-C-A 11902374-C-A **
23046079-CA-C 20884193-CA-C **
6577087-C-A 6709046-C-A **
10783596-C-A **
10947418-C-CA **
15209300-C-A 13097386-C-A **
22100851-C-T 19938965-C-T **
10770926-C-A **
10770919-C-T **
10770913-A-T **
2783588-T-G 2915547-T-G **
10821166-T-A **
3103-T-A **
4215961-G-A 4347920-G-A **
10864986-A-C **
13707080-A-G 11551404-A-G **
17367702-T-G 15255822-T-G **
21464561-G-T 19302675-G-T **
10926286-T-C **
10770884-C-T **
10770881-C-T **
10760740-T-A **
10824154-T-A **
10864991-C-G **
3111804-C-A 3243763-C-A **
16063113-C-A 13951233-C-A **
14513334-C-A 12401539-C-A **
3598476-C-A 3730435-C-A **
3347532-C-A 3479491-C-A **
24491451-G-A 22345304-G-A FGC60848 **
22100855-C-T 19938969-C-T **
22146764-C-T 19984878-C-T **
14273594-GCA-G 12152888-GCA-G **
4357006-G-A 4488965-G-A **
24491376-A-T 22345229-A-T **
5785681-AAG-A 5917640-AAG-A **
10833241-C-A **
25990686-G-T 23844539-G-T P1_Y1 **
56705895-G-C **
13938705-G-T 11817999-G-T **
21513885-C-A 19351999-C-A **
10826235-C-T **
56839906-C-A **
10772663-T-C **
15649952-C-A 13538072-C-A **
10760757-C-A **
10941224-G-T **
56705944-T-A **
56705893-A-C **
10888274-C-T **
17928394-C-A 15816514-C-A **
10998697-G-T **
22100825-CA-C 19938939-CA-C 8×A**
22591531-T-G 20429645-T-G **
17538128-C-A 15426248-C-A **
24607229-AGT-A 22461082-AGT-A P3_t2 10×GT**
19979865-T-TG 17867985-T-TG P5_Prx **
2970099-C-A 3102058-C-A **
10925439-G-C **
15733667-C-A 13621787-C-A **
7501560-G-T 7633519-G-T IR1_L **
7306302-C-A 7438261-C-A **
4827017-A-T 4958976-A-T **
5815470-A-T 5947429-A-T **
5746237-A-C 5878196-A-C **
5746161-C-A 5878120-C-A **
5650556-C-A 5782515-C-A **
5601140-C-A 5733099-C-A **
5242605-A-C 5374564-A-C **
5200230-C-T 5332189-C-T **
5101039-C-A 5232998-C-A **
4497656-T-G 4629615-T-G **
5815485-G-A 5947444-G-A **
4326017-A-C 4457976-A-C **
3990537-G-C 4122496-G-C **
3990536-T-C 4122495-T-C **
3990527-A-G 4122486-A-G **
3990515-AAT-C 4122474-AAT-C **
3990484-G-A 4122443-G-A **
3990463-T-C 4122422-T-C **
3415304-G-T 3547263-G-T **
5815482-C-T 5947441-C-T **
5846525-C-A 5978484-C-A **
3146616-C-A 3278575-C-A **
7139299-A-C 7271258-A-C **
8085623-T-C 8217582-T-C **
8085588-G-A 8217547-G-A **
8016939-T-G 8148898-T-G **
7543915-G-T 7675874-G-T **
7314575-T-G 7446534-T-G **
7243298-C-T 7375257-C-T **
7240791-G-A 7372750-G-A **
7156718-A-C 7288677-A-C **
7105044-A-T 7237003-A-T **
5873716-T-G 6005675-T-G **
7093361-A-C 7225320-A-C **
6929564-G-T 7061523-G-T **
6828808-T-G 6960767-T-G **
6755371-T-G 6887330-T-G **
6532274-T-G 6664233-T-G **
6368060-C-A 6500019-C-A **
6070179-G-T 6202138-G-T **
6032481-G-T 6164440-G-T **
5948776-G-T 6080735-G-T **
3277285-A-C 3409244-A-C **
35581-C-A **
3105268-G-T 3237227-G-T **
23802041-C-A 21640155-C-A **
8085664-C-T 8217623-C-T **
19066028-C-A 16954148-C-A **
7487270-C-A 7619229-C-A IR1_L **
10807849-A-C **
11011651-C-T **
2783598-G-A 2915557-G-A **
11008813-C-A **
16077575-AAAAAGT-A 13965695-AAAAAGT-A **
13205387-C-A 11049711-C-A **
10815775-C-A **
13255560-C-A 11099884-C-A **
10895320-C-A **
5459299-C-A 5591258-C-A **
10888258-C-T **
5710438-C-A 5842397-C-A **
10880397-C-A **
10865023-A-G **
9952367-C-A 10114758-C-A **
10888277-C-G **
10888245-T-A **
10764078-G-T **
28720164-A-T 26574017-A-T **
14607868-G-T 12496070-G-T **
3047447-T-G 3179406-T-G **
7860166-C-A 7992125-C-A **
21856523-A-C 19694637-A-C **
2783633-T-A 2915592-T-A **
3011640-C-G 3143599-C-G **
11024813-G-T **
2708629-T-G 2840588-T-G **
18368636-GT-G 16256756-GT-G P6_Prx **
27620703-A-T 25474556-A-T P1_Y2 **
3044262-A-T 3176221-A-T **
10921423-T-C **
13406185-C-A 11250509-C-A ***
10778337-C-A ***
10882017-C-A,T ***
10984713-C-A ***
22431170-T-C 20269284-T-C DYZ19 ***
10927449-T-C ***
17332749-CC-C,CA 15220869-CC-C,CA ***
11013604-T-C,G ***
10658725-G-T ***
11011822-C-A ***
10673439-C-A ***
10776197-C-A ***
21220240-CTTTTTT-C,CTTTTT 19058354-CTTTTTT-C,CTTTTT 19×T***
2750759-G-T 2882718-G-T ***
18365541-ATGTGTG-A,ATGTG 16253661-ATGTGTG-A,ATGTG P6_Prx 20×TG***
21138820-C-A 18976934-C-A ***
22996064-C-A 20834178-C-A ***
10809497-C-T ***
22804520-C-A 20642634-C-A ***
7925845-G-GT 8057804-G-GT ***
7655209-G-T 7787168-G-T ***
10927402-C-A,T ***
10790717-C-A ***
10858842-C-A ***
10889328-A-T ***
13454721-C-A 11299045-C-A ***
10975763-G-C,T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 485969978953079281187809828
Used in age calculations978953079281187809828
Counts of SNPs2520
Variant counts last updated 2019-06-17 00:02:00.



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