Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5625 > L226 > FGC5660 > Z17669 > A10950 > DC127

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
191141
15226864-G-C 13114950-G-C BY100296 YA+
15226870-T-C 13114956-T-C Y17059A10551 A10079 YA+
25897206-C-CA 23751059-C-CA P1_Y1 15×AA*
26167455-C-T 24021308-C-T P1_Y1 A*
16565221-T-C 14453341-T-C FGC52554 YY+
7288961-A-G 7420920-A-G BY204718 YY+
15359192-TCA-T 13247312-TCA-T +
4425771-T-C 4557730-T-C BY204688 +
7912475-C-T 8044434-C-T BY204725 YY+
9401718-G-A 9564109-G-A BY204761 YY+
14491684-T-C 12379881-T-C P37 FGC51812PF4004 P37 YY+
21951629-A-T 19789743-A-T BY204923 YY+
22509947-A-T 20348061-A-T BY204677 DYZ19 +
14436360-G-T 12315633-G-T BY161786 Y*
14436361-T-G 12315634-T-G BY161787 Y*
10842003-C-T **
7861915-G-A 7993874-G-A **
9765923-A-G 9928314-A-G **
10883582-GACTTC-G **
9094462-G-T 9256853-G-T **
8321639-AC-A 8453598-AC-A **
10923610-A-T **
7886419-T-C 8018378-T-C **
10927396-C-T **
7829059-C-A 7961018-C-A **
10651548-C-G **
7713309-A-G 7845268-A-G **
7710494-C-A 7842453-C-A **
7371989-C-T 7503948-C-T **
10927423-A-T **
7314483-T-G 7446442-T-G **
7300182-G-T 7432141-G-T **
7043228-C-A 7175187-C-A **
9955311-G-A 10117702-G-A **
10660771-A-ACTGCC **
10834202-A-G **
10777801-C-T **
10860315-C-G **
10834192-A-T **
10824462-C-A **
10862447-A-C **
10824175-T-C **
10815740-C-A **
10794929-C-T **
10770162-G-T **
10662788-A-G **
10760113-T-C **
10751695-A-G **
6665746-G-T 6797705-G-T **
10691214-T-G **
10862864-C-T **
10678291-C-A **
10867962-T-C **
10662790-A-C **
10751683-C-A **
5555063-G-T 5687022-G-T **
6355742-T-C 6487701-T-C **
11015184-C-A **
2928454-A-G 3060413-A-G **
2909298-T-C 3041257-T-C **
10804780-T-A **
10937237-G-C **
14483530-C-A 12362799-C-A **
10830054-T-C **
8100678-C-A 8232637-C-A **
2970396-G-T 3102355-G-T **
16826599-C-T 14714719-C-T **
2970118-T-C 3102077-T-C **
10760369-C-G **
3271826-C-A 3403785-C-A **
21604162-C-A 19442276-C-A **
10860852-A-C **
10925012-C-A **
18017108-GATATATATATATATATATATATAT-G 15905228-GATATATATATATATATATATATAT-G 22×AT**
16424913-G-T 14313033-G-T **
11032595-A-T FGC78251 **
2758842-C-CAA 2890801-C-CAA 19×A**
2929426-G-T 3061385-G-T **
3024549-A-G 3156508-A-G **
6279755-C-A 6411714-C-A IR3_Dst **
4521759-T-C 4653718-T-C **
5851186-G-A 5983145-G-A **
5682369-G-T 5814328-G-T **
10930078-T-G **
5127159-T-A 5259118-T-A **
5127157-G-C 5259116-G-C **
4722009-A-G 4853968-A-G **
4703171-C-A 4835130-C-A **
4586178-G-A 4718137-G-A **
4293531-G-GT 4425490-G-GT **
3452129-C-A 3584088-C-A **
4270857-C-A 4402816-C-A **
4254983-T-C 4386942-T-C **
4230046-C-A 4362005-C-A **
4177993-A-G 4309952-A-G **
4075455-G-T 4207414-G-T **
4063187-G-C 4195146-G-C **
3728769-G-A 3860728-G-A **
3726461-A-C 3858420-A-C **
3726450-A-C 3858409-A-C **
10927447-C-T **
23377534-TA-T 21215648-TA-T 9×A**
10932785-C-A **
19411778-A-C 17299898-A-C **
21608068-AAAAAAAAAAAC-A 19446182-AAAAAAAAAAAC-A **
21381725-A-G 19219839-A-G **
20755543-A-G 18593657-A-G P4_Prx **
20693495-A-G 18531609-A-G P4_Prx **
20570379-GT-G 18408493-GT-G P5_Dst **
20433800-A-T 18271914-A-T P5_Dst **
19924674-T-A 17812794-T-A P5_Prx **
19837991-G-A 17726111-G-A P5_Prx **
19351837-G-T 17239957-G-T **
22517192-G-T 20355306-G-T **
19351706-G-T 17239826-G-T **
19125174-C-A 17013294-C-A **
19081262-T-G 16969382-T-G **
18931973-A-G 16820093-A-G **
18931969-A-G 16820089-A-G **
18165716-C-A 16053836-C-A **
17966558-C-A 15854678-C-A **
17812108-C-A 15700228-C-A **
16930740-C-A 14818860-C-A **
22228133-G-A 20066247-G-A DYZ19 **
22775427-A-G 20613541-A-G **
16575022-G-T 14463142-G-T **
24529575-T-A 22383428-T-A P3_t2 **
28707933-T-C 26561786-T-C **
28707931-A-G 26561784-A-G **
28625468-G-A 26479321-G-A **
28580244-C-A 26434097-C-A **
28024158-C-T 25878011-C-T P1_Y2 **
24904714-T-A 22758567-T-A g1 **
24604498-G-T 22458351-G-T P3_t2 **
24529583-T-A 22383436-T-A P3_t2 **
24529561-G-T 22383414-G-T P3_t2 **
22811073-A-C 20649187-A-C **
24529549-T-A 22383402-T-A P3_t2 **
24529534-T-A 22383387-T-A P3_t2 **
23997328-T-C 21851181-T-C **
23603283-A-T 21441397-A-T **
23603279-T-G 21441393-T-G **
23291252-A-C 21129366-A-C **
23206626-C-A 21044740-C-A **
23034417-A-C 20872531-A-C **
22836879-C-T 20674993-C-T FT26219 **
16676937-T-C 14565057-T-C **
16575017-T-C 14463137-T-C **
10952942-C-A FGC81341 **
11004358-TCCACTCCACTCCAAG-T **
13222942-A-T 11067266-A-T **
11032591-T-A **
11026743-AC-A **
11016923-T-A **
11009303-T-C **
11006066-C-G **
11006046-G-T **
11006037-G-T **
10989930-C-TA **
13273978-C-A 11118302-C-A **
10989927-A-C **
10989111-C-T **
10976416-T-G **
10976185-TCTCCA-T **
10956152-C-A **
10956081-A-G **
10677652-A-T **
10955193-T-C **
10953659-T-A **
13255410-G-T 11099734-G-T 11×T**
13409316-C-A 11253640-C-A **
16432823-C-A 14320943-C-A **
14514204-C-A 12402409-C-A **
16429109-G-A 14317229-G-A **
16052988-C-A 13941108-C-A **
15815393-A-AT 13703513-A-AT **
15689105-G-C 13577225-G-C **
15394283-C-A 13282403-C-A **
15302592-G-A 13190691-G-A **
14725694-G-T 12613762-G-T **
14688802-G-A 12576868-G-A **
12555879-TCTC-T **
14352347-C-A 12231642-C-A **
13594714-C-A 11439038-C-A **
14285893-G-A 12165187-G-A FGC31664 **
14253198-T-A 12132492-T-A **
14253183-A-C 12132477-A-C **
14253171-C-G 12132465-C-G **
14253168-T-A 12132462-T-A **
13940303-CT-C 11819597-CT-C **
11648504-G-T **
13697098-C-G 11541422-C-G **
13697084-A-T 11541408-A-T **
10955836-C-A **
3834589-C-A 3966548-C-A **
9398082-A-T 9560473-A-T **
10982802-C-A **
22077181-C-A 19915295-C-A **
27633603-G-T 25487456-G-T P1_Y2 **
18165686-C-A 16053806-C-A **
23034446-A-T 20872560-A-T **
27792014-G-T 25645867-G-T P1_Y2 **
10953643-G-T **
7861900-G-T 7993859-G-T **
4326492-C-A 4458451-C-A **
21211272-G-T 19049386-G-T **
5263622-CA-C 5395581-CA-C 9×A**
10979560-C-T **
10955198-T-C **
10894578-T-G **
14909640-C-A 12797707-C-A **
19052434-AAAAAG-A 16940554-AAAAAG-A **
13958692-C-A 11837986-C-A **
10979569-A-T **
16041119-T-G 13929239-T-G **
10997751-T-C **
10796119-T-A **
5220241-T-C 5352200-T-C **
10923581-CTCATT-C **
10760381-A-T **
22441926-C-G 20280040-C-G DYZ19 **
56678425-A-G **
56678419-G-T **
56678411-A-G **
23459768-C-A 21297882-C-A **
11675533-A-G **
24359514-C-T 22213367-C-T **
19673532-C-A 17561652-C-A P5_Prx **
10796122-C-CATTAA **
10777082-C-A **
21388665-CTCTTT-C 19226779-CTCTTT-C **
11005997-A-C **
10947853-T-C **
10751671-G-C **
6694067-G-GTT 6826026-G-GTT 10×T**
10924673-C-A **
11016419-C-G **
10796127-C-CATTCT **
22164547-C-CAA 20002661-C-CAA 19×A**
10979557-C-T **
23241972-TTTG-T 21080086-TTTG-T **
13856657-G-A 11735951-G-A FT46212 **
14253203-A-C 12132497-A-C **
25524751-A-G 23378604-A-G P1_gr1 **
18345943-A-AATAAATACATAC 16234063-A-AATAAATACATAC P6_Prx 9×ATAC**
10958569-TCCACTGCA-T **
10979559-A-C **
17081288-AATAT-A 14969408-AATAT-A 11×AT**
3550572-CTCAA-C 3682531-CTCAA-C **
19126436-C-CAAAAAAAAAAAA 17014556-C-CAAAAAAAAAAAA 25×A**
14667817-C-CAAA 12555882-C-CAA 23×A**
10935487-C-T **
20101678-C-A 17989798-C-A P5_Dst **
14639064-CTTTTT-C 12527133-CTTTTT-C 18×T**
58988498-T-G 56842351-T-G **
13207882-C-A 11052206-C-A **
7253962-G-T 7385921-G-T **
21939618-G-A 19777732-G-A PF3817 **
13199164-C-CAAA 11043488-C-CAAA 18×A**
5768083-A-C 5900042-A-C **
7165306-GTTTT-G 7297265-GTTTT-G 20×T**
11021264-G-C **
16719663-C-A 14607783-C-A **
10787457-A-T **
20440392-T-TTGG 18278506-T-TTGG P5_Dst 13×TTG**
11648519-G-T **
13255320-A-T 11099644-A-T **
11013255-T-C **
10988845-T-A **
14695899-A-G 12583965-A-G **
6330229-CA-C 6462188-CA-C IR3_Dst **
13208770-GGAAGAAGAAGAA-G 22×GAA**
10988666-A-G **
10834541-C-A **
10988659-C-A **
13457567-T-A 11301891-T-A **
10808689-T-A **
10808676-C-A **
10808673-C-A **
10808660-T-G **
10901529-C-A **
4604311-C-A 4736270-C-A **
10802102-C-A **
10997736-T-C **
56678402-T-G **
11029176-T-G **
10935491-C-A **
10802113-C-A **
10802087-ATTCCT-A **
10802081-C-T **
10948088-C-A **
21750876-G-T **
5242905-C-A 5374864-C-A **
15971521-C-T 13859641-C-T **
26514944-C-T 24368797-C-T P1_Y1 **
56843844-C-G **
16424784-G-T 14312904-G-T **
56843795-C-G **
5454837-C-A 5586796-C-A **
10927413-A-G **
10927441-C-A **
3606202-C-A 3738161-C-A **
10662812-G-T **
14253169-G-A 12132463-G-A **
15832194-G-T 13720314-G-T **
10802121-C-A **
10961181-C-A **
10935450-T-C **
10934302-A-G **
10802072-ACTCCG-A **
10979131-C-A **
7939472-T-TAA 8071431-T-TAA 35×A**
10992572-C-T **
11007045-C-A **
10997737-T-C FGC79033 **
10997752-T-C **
21677489-C-A 19515603-C-A **
15619017-C-A 13507137-C-A **
10663726-C-A **
10925013-C-A **
5861713-C-A 5993672-C-A **
23255967-C-A 21094081-C-A **
10954468-C-A **
21556919-CTTTT-C 19395033-CTTTT-C 23×T**
22301521-C-A 20139635-C-A DYZ19 **
14299993-C-A 12179287-C-A **
15532485-T-C 13420605-T-C **
13934890-C-A 11814184-C-A **
10982813-T-G **
28707953-T-C 26561806-T-C **
10943894-T-C **
10968427-ACCATT-A **
10651608-CT-C **
10651598-C-G **
10651585-T-A **
3592780-G-T 3724739-G-T **
10760389-C-T **
15280610-C-A 13168709-C-A FGC48772 **
10972303-T-C **
11006067-C-A **
19012387-C-A 16900507-C-A **
10651663-C-T **
56843809-G-T **
24595462-C-A 22449315-C-A P3_t2 **
10989920-CT-C **
10989910-C-T **
10852719-C-A **
4847447-T-TA 4979406-T-TA 11×A**
10927371-T-C **
6040270-C-A 6172229-C-A **
10651635-C-T **
14524021-C-A 12412222-C-A **
10651672-C-T **
16048812-C-A 13936932-C-A **
8020215-C-A 8152174-C-A **
28625794-GA-G 26479647-GA-G 10×A**
7254030-G-A 7385989-G-A **
5187038-C-A 5318997-C-A **
9943879-G-T 10106270-G-T **
11005526-C-T **
10032561-A-G 10194952-A-G **
10824129-T-G **
10973669-T-A **
10764549-T-TACTC **
56848906-G-A **
10835305-G-T **
21880970-G-T 19719084-G-T ***
15669964-CAAAA-C,CA 13558084-CAAAA-C,CA 18×A***
18738808-C-CAT 16626928-C-CAT 9×AT***
21992963-TAAAAAAA-T 19831077-TAAAAAAA-T 23×A***
11018260-C-G ***
6541218-C-A 6673177-C-A ***
3991945-AACAC-A 4123904-AACAC-A 12×AC***
6427566-A-G 6559525-A-G ***
16519316-CAA-C,CA 14407436-CAA-C,CA 15×A***
11018257-C-T ***
10958533-T-TATCAG ***
2828886-C-A 2960845-C-A ***
13488623-C-A 11332947-C-A ***
10800964-C-A ***
21153500-TA-T 18991614-TA-T ***
16702158-G-T 14590278-G-T ***
10776851-C-A ***
2842206-CTATT-C 2974165-CTATT-C 9×TATT***
14540854-G-T 12429055-G-T ***
17789788-CT-C 15677908-CT-C 9×T***
17928893-A-G 15817013-A-G ***
13908361-C-A 11787655-C-A ***
17527354-G-GTATA 15415474-G-GTATA 10×TA***
2860458-GTTT-G 2992417-GTTT-G 18×T***
13217430-A-AG 11061754-A-AG ***
15268964-C-A 13157053-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 191141991103880780997955543
Used in age calculations991103880780997955543
Counts of SNPs106
Variant counts last updated 2019-07-19 22:58:48.



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