Tree Position

R-M269 > L23 > L51 > P310 > L151 > S1194 > S1200 > S14328 > 13184964-C-G > BY46915 > BY62252 > BY200917

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
847813
BigY2
847813
22222594-A-C 20060708-A-C DYZ19 A+
13141762-G-GCCATT 10631248-G-GCCATT 11×CCATTA*
10037831-T-G 10200222-T-G A*
18490252-C-CT 16378372-C-CT P6_Dst 11×TA*
18464538-T-TAC 16352658-T-TAC P6_Dst 13×ACA*
56834726-T-A A*
56834177-G-T A*
18329043-C-CT 16217163-C-CT P6_Prx 17×TA*
22433411-A-C 20271525-A-C DYZ19 A*
4410687-G-A 4542646-G-A A*
21021632-C-CT 18859746-C-CT P4_Dst 17×TA*
56834706-A-G A*
21028683-C-G 18866797-C-G P4_Dst YA*
58976868-A-T 56830721-A-T A*
13295267-C-T 11139591-C-T A*
13695066-G-A 11539390-G-A A*
28818609-A-G 26672462-A-G A*
13448437-C-T 11292761-C-T FT140088 A*
13860062-C-T 11739356-C-T A*
10999886-T-TTTAAC A*
17612010-C-T 15500130-C-T BY199473 YY++
3489800-T-C 3621759-T-C FT95055 +
9446390-C-A 9608781-C-A BY198803 YY++
6605600-G-A 6737559-G-A *
13867986-TAATGGAATGGAATGG-T 11747280-TAATGGAATGGAATGG-T 10×AATGG****
15799353-T-TTC 13687473-T-TTC 15×TC*
4411556-T-C 4543515-T-C *
10961218-T-C **
10961251-CA-C **
28620784-C-T 26474637-C-T **
10961215-T-C **
21671979-C-A 19510093-C-A **
16267257-A-G 14155377-A-G **
10783199-G-T **
16267266-A-G 14155386-A-G **
8269763-C-A 8401722-C-A **
16267268-AAACC-A 14155388-AAACC-A **
16309186-C-T 14197306-C-T **
13708965-C-T 11553289-C-T **
16336918-T-G 14225038-T-G **
23881442-AAACAAAC-A 21719556-AAACAAAC-A **
10806400-G-A **
10664627-A-C **
13226965-C-A 11071289-C-A **
27967238-GTA-G 25821091-GTA-G P1_Y2 **
56750075-C-A **
7131384-A-C 7263343-A-C **
10780470-C-T **
14948972-C-A 12837046-C-A **
14080107-G-T 11959401-G-T **
19686207-A-C 17574327-A-C P5_Prx **
15430213-C-A 13318333-C-A **
13226525-C-A 11070849-C-A **
10798314-TC-T **
10629099-T-TTGCGC **
17159508-C-A 15047628-C-A **
15686861-C-A 13574981-C-A **
16052776-T-C 13940896-T-C FT272493 **
16245036-C-A 14133156-C-A **
22996968-G-T 20835082-G-T **
10806388-A-C **
7270394-C-A 7402353-C-A **
7270391-C-A 7402350-C-A **
16267245-G-C 14155365-G-C **
10806398-G-C **
18370847-CTTTT-C 16258967-CTTTT-C P6_Prx 25×T**
10806374-G-T **
10798225-G-C **
15399419-G-GAA 13287539-G-GAA 15×A**
10982825-G-C **
16777851-C-A 14665971-C-A **
10760729-A-T **
18742443-C-A 16630563-C-A **
56750056-G-T **
10798210-T-C **
10925615-C-G **
10798127-T-C **
17318340-C-G 15206460-C-G **
17349211-A-AG 15237331-A-AG **
17737825-T-C 15625945-T-C **
10776107-C-G **
10961248-T-C **
10798235-G-C **
4213186-G-GTT 4345145-G-GTT 15×T**
18630903-A-AGG 16519023-A-AGG **
19272124-C-A 17160244-C-A **
24265867-A-G 22119720-A-G P3_b1 **
5093227-C-A 5225186-C-A **
16999103-G-A 14887223-G-A **
10806351-A-C **
15012609-C-A 12900697-C-A **
10806347-T-G **
7341442-C-A 7473401-C-A **
18059805-C-A 15947925-C-A **
10798212-A-G **
10798207-T-A **
10798206-C-T FT431679 **
28818194-G-A 26672047-G-A 5×TGGAA**
17546005-C-A 15434125-C-A **
13708936-A-G 11553260-A-G **
10925609-C-T FT436760 **
16625279-A-C 14513399-A-C **
11032011-C-A **
16344458-GCTTCTT-G 14232578-GCTTCTT-G 12×CTT*****
10769912-A-C **
10653471-A-T **
16777808-C-A 14665928-C-A **
17349264-C-T 15237384-C-T **
15412299-C-G 13300419-C-G **
10925614-C-T **
14715593-C-T 12603660-C-T **
10828157-C-T **
13256045-T-TG 11100369-T-TG **
7044882-A-G 7176841-A-G **
10771509-C-A **
10745190-C-A **
10652130-C-T **
9542220-T-C 9704611-T-C IR3_Prx **
9056202-G-A **
8731569-C-A 8863528-C-A **
8077716-G-T 8209675-G-T **
7270406-T-C 7402365-T-C **
13944524-A-G 11823818-A-G **
10810904-T-C **
6602493-G-T 6734452-G-T **
6243811-G-T 6375770-G-T IR3_Dst **
13960729-C-A 11840023-C-A **
5728862-C-A 5860821-C-A **
5248859-T-C 5380818-T-C **
5247615-G-A 5379574-G-A **
5165946-C-A 5297905-C-A **
4915157-T-G 5047116-T-G **
4616660-A-G 4748619-A-G **
10780490-C-T **
10812734-T-C **
4293028-C-A 4424987-C-A FTA26007 **
10983782-G-T **
13485594-C-T 11329918-C-T **
13360953-C-A 11205277-C-A **
13272949-T-A 11117273-T-A **
13272948-C-T 11117272-C-T **
13879168-G-T 11758462-G-T **
11032703-C-A **
11009977-C-A **
10989189-CTCCAT-C **
10953985-C-A **
10812741-G-C **
10953981-C-G **
10951926-T-C **
10936904-C-A **
10932249-C-A **
13899213-A-C 11778507-A-C **
10927579-C-T **
13938490-G-T 11817784-G-T **
10844495-C-A **
10814756-C-T **
4568876-AT-A 4700835-AT-A **
4078469-A-C 4210428-A-C **
16999175-C-T 14887295-C-T **
17349256-C-T 15237376-C-T **
4887612-CAAA-C 5019571-CAAA-C 29×A**
10810489-T-C **
14294099-G-T 12173393-G-T **
10939418-C-A **
10982821-A-C **
7270415-C-T 7402374-C-T **
10989219-C-T **
6791165-C-A 6923124-C-A **
28485873-C-A 26339726-C-A **
27104-T-C **
14561400-C-G 12449601-C-G **
10828183-A-C **
14670834-A-AT 12558900-A-AT 10×T**
14714957-G-T 12603024-G-T **
5410023-G-T 5541982-G-T **
13642998-G-C 11487322-G-C **
10656373-T-C **
18742444-T-A 16630564-T-A **
28627304-C-A 26481157-C-A **
27093-T-G **
27176-C-A **
3922870-C-A 4054829-C-A **
15423960-G-T 13312080-G-T **
3463405-A-C 3595364-A-C **
3375285-A-G 3507244-A-G **
3368158-G-T 3500117-G-T **
3087168-T-G 3219127-T-G **
3087163-C-G 3219122-C-G **
14445389-C-A 12324662-C-A **
10949625-C-A **
15541841-C-A 13429961-C-A **
13222619-G-GAGGA 11066943-G-GAGGA **
17349209-A-G 15237329-A-G **
6226087-C-A 6358046-C-A IR3_Dst **
14146956-G-A 12026250-G-A FT5178 **
22011557-CAAAAAAA-C 19849671-CAAAAAAA-C 21×A**
18630889-A-G 16519009-A-G **
27733152-G-T 25587005-G-T P1_Y2 **
18630901-A-T 16519021-A-T **
10828164-T-C **
21771532-C-A 19609646-C-A **
27889322-CA-C 25743175-CA-C P1_Y2 **
10835213-T-C **
14832068-C-T 12720135-C-T **
9564511-GT-G 9726902-GT-G IR3_Prx **
17362804-C-A 15250924-C-A **
10796802-T-C **
10974775-C-A **
10760051-C-T **
28762552-C-A 26616405-C-A **
56839125-T-A **
10763067-ACTCCC-A **
10755296-T-C **
10755289-C-T **
10676699-G-T **
10798154-G-T **
10676677-G-GAA **
10676671-TTGA-T **
10676660-A-G **
10676624-T-C **
10676616-C-T **
10676612-A-C **
10796808-T-A **
56876867-T-C **
10798135-T-C **
10798159-G-CT **
56861645-C-G **
10990877-G-A **
10769918-G-C **
10769888-C-T **
28395500-G-T 26249353-G-T P1_gr2 **
28395547-A-G 26249400-A-G P1_gr2 **
19772210-T-TACAG 17660330-T-TACAG P5_Prx **
10954103-C-T FT438027 **
10990886-C-T **
10990869-T-A **
10798164-G-C **
28395562-A-C 26249415-A-C P1_gr2 **
28429417-ATGGTTAT-A 26283270-ATGGTTAT-A P1_gr2 **
10799555-CATTTCATTCT-C **
28521937-C-A 26375790-C-A **
28698788-T-C 26552641-T-C **
10798188-G-A **
10798174-G-T **
10798167-A-G **
10962854-ATTGCC-A **
28794264-T-A 26648117-T-A **
27733195-G-T 25587048-G-T P1_Y2 **
25520340-CTTTTT-C 23374193-CTTTTT-C P1_gr1 16×T**
18242832-A-G 16130952-A-G Z12076 **
13856812-A-C 11736106-A-C BY17774 **
17175506-G-A 15063626-G-A CTS6892 M4840 **
5042180-GATAT-G 5174139-GATAT-G 17×AT**
16105187-G-T 13993307-G-T P8_Prx **
15323661-CAAAA-C 13211779-CAAAA-C 18×A**
5728934-TAG-T 5860893-TAG-T **
19127669-C-T 17015789-C-T **
28234398-T-TTATATA 26088251-T-TTATATA P1_b4 18×TA**
25954076-T-C 23807929-T-C P1_Y1 **
13856841-A-G 11736135-A-G **
13457683-T-A 11302007-T-A **
13856835-A-T 11736129-A-T **
26004269-G-T 23858122-G-T P1_Y1 **
27521872-TA-T 25375725-TA-T P1_Y2 **
13856777-A-G 11736071-A-G FGC62845 **
27398510-C-A 25252363-C-A P1_g3 23×A**
5028079-T-TATATAATATAATATATATA 5160038-T-TATATAATATAATATATATA 9×ATATA**
19853784-C-A 17741904-C-A P5_Prx **
10974783-T-A **
11643668-G-T **
10797726-C-A FT383807 **
10797688-T-A **
10954118-C-T **
10954048-C-T ***
10954027-A-C **
13481480-T-C 11325804-T-C **
5785677-AAG-A 5917636-AAG-A **
11643674-G-T **
11013545-T-C **
14727319-ATTT-A 12615387-ATTT-A 23×T**
28438188-CA-C 26292041-CA-C P1_gr2 31×A**
13481505-C-T 11325829-C-T **
13481525-C-G 11325849-C-G **
19389717-T-TA 17277837-T-TA 17×A**
2855467-ATT-A 2987426-ATT-A 16×T**
18511248-C-A 16399368-C-A P6_Dst **
13457663-A-G 11301987-A-G **
13347932-TAC-T 11192256-TAC-T 21×AC**
28120590-A-T 25974443-A-T P1_b4 **
10796223-G-T **
10924449-T-C **
28794253-G-C 26648106-G-C **
22455310-G-A 20293424-G-A DYZ19 **
19558276-ATT-A 17446396-ATT-A 14×T**
10858531-C-T **
10982565-T-C **
22455311-C-G 20293425-C-G DYZ19 **
28818027-C-G 26671880-C-G **
10806375-T-A **
10664630-T-C **
10688024-C-T **
10961180-C-T **
6273855-CA-C 6405814-CA-C IR3_Dst **
19853770-C-A 17741890-C-A P5_Prx **
10921202-A-T **
10763248-C-G **
10763247-A-T **
14787954-TTTTA-T 12676025-TTTTA-T 8×TTTA**
13466355-A-G 11310679-A-G **
10688015-T-A **
22289402-T-A 20127516-T-A DYZ19 **
22455348-C-T 20293462-C-T DYZ19 **
13466370-G-A 11310694-G-A **
10797939-C-G **
10961220-T-C **
19965155-A-C 17853275-A-C P5_Prx **
10988603-T-A **
10653507-C-T **
20323704-T-G 18161818-T-G P5_Dst **
10790359-A-C **
13643001-T-A 11487325-T-A **
20323706-GT-G 18161820-GT-G P5_Dst **
16102028-GT-G 13990148-GT-G P8_Prx **
10880564-T-C **
10880559-T-G **
10880558-C-G **
20625008-G-T 18463122-G-T P4_Prx **
6112917-T-A 6244876-T-A FT75516 **
21991124-G-A 19829238-G-A **
10961536-T-C **
10692266-T-A **
13466343-G-T 11310667-G-T **
22455329-C-G 20293443-C-G DYZ19 **
6440357-AT-A 6572316-AT-A 8×T**
10789495-A-G **
10988918-G-C **
10988909-G-T **
10988908-G-T **
10988905-G-A **
11013966-T-C **
10678034-TTCCAC-T **
23802208-T-G 21640322-T-G **
24274183-A-G 22128036-A-G P3_b1 **
24877330-G-T 22731183-G-T g1 **
23459790-C-A 21297904-C-A **
3804732-CAAA-C 3936691-CAAA-C 29×A**
28794225-T-A 26648078-T-A **
10780457-G-C **
10692279-C-A **
11013528-C-A **
11006476-C-T **
27733169-C-A 25587022-C-A P1_Y2 **
19899631-AG-A 17787751-AG-A P5_Prx **
10992336-ACTCC-A **
10988912-A-C **
22971740-T-C 20809854-T-C **
27810334-AAGGG-A 25664187-AAGGG-A P1_Y2 **
14609823-T-. 12498025-A-T Y132978 **
10759295-C-T **
10759285-G-A **
10759266-G-A **
10759264-G-C **
10759254-A-C **
10759240-G-T **
10759234-T-C **
10759231-T-C **
10759213-T-G **
22455353-C-G 20293467-C-G DYZ19 **
28556330-T-G 26410183-T-G FT399382 **
13504990-C-A 11349314-C-A **
10780461-C-T **
13707080-A-T 11551404-A-T **
10961529-C-T **
5931916-CTTTTT-C 6063875-CTTTTT-C 32×T***
5563451-CT-C,CTT 5695410-CT-C,CTT 11×T***
28672562-A-G 26526415-A-G ***
13353757-T-C 11198081-T-C ***
13482300-T-C 11326624-T-C ***
26479904-T-A 24333757-T-A P1_Y1 ***
4936091-G-T 5068050-G-T ***
14727342-TA-A,T 12615410-TA-A,T ***
4410673-T-C 4542632-T-C ***
13860381-A-G 11739675-A-G ***
7164467-CA-C,CAA 7296426-CA-C,CAA 24×A***
22536983-TAA-T,TAAAA 20375097-TAA-T,TAAAA 16×A***
24096094-C-CTA 21949947-C-CTA P3_b1 ***
13353746-ATG-A 11198070-ATG-A ***
17065520-G-A 14953640-G-A ***
24148943-T-C 22002796-T-C P3_b1 ***
13481486-A-C 11325810-A-C ***
10024046-C-T 10186437-C-T ***
13582767-G-T 11427091-G-T ***
10760014-C-G ***
17515584-TAAA-T 15403704-TAAA-T 17×A***
23827542-CAA-C 21665656-CAA-C 17×A***
13488685-G-A 11333009-G-A ***
10667019-C-T BY177753 ***
10789531-A-C ***
13598633-C-A 11442957-C-A ***
10686613-C-A BY83707 ***
18895707-GA-G 16783827-GA-G 12×A***
10824237-A-C ***
10682755-A-T ***
4583115-CTTT-C 4715074-CTTT-C 22×T***
10794219-T-C ***
10799594-C-G ***
10760027-T-TGGCTC ***
56850524-C-T ***
56850529-G-C ***
11025495-G-A,T ***
8843536-ATTT-A,AT 8975495-ATTT-A,AT 23×T***
10748031-C-G ***
24389894-CTTTTT-C 22243747-CTTTTT-C 26×T***
5344471-TAAA-T 5476430-TAAA-T 37×A***
22023201-CTTT-C 19861315-CTTT-C 20×T***
10789557-C-T ***
26477922-AAC-A 24331775-AAC-A P1_Y1 14×AC***
22812629-CTTTT-C 20650743-CTTTT-C 28×T***
13856780-T-TGGAGG 11736074-T-TGGAGG ***
10024032-C-CTCTT 10186423-C-CTCTT ***
24877503-C-CT 22731356-C-CT g1 23×T***
16909178-CTT-C 14797298-CTT-C 16×T***
28482878-T-TA 26336731-T-TA 10×A***
13488818-A-C 11333142-A-C ***
18401199-CA-C 16289319-CA-C P6_Gap 30×A***
14698458-CAA-C 12586524-CAA-C 19×A***
2795555-A-T 2927514-A-T M2132 ***
58975142-A-G 56828995-A-G ***
4550339-A-G 4682298-A-G ***
58975270-C-T 56829123-C-T ***
13612982-CAT-C 11457306-CAT-C ***
13488712-C-T 11333036-C-T ***
19513143-C-CT 17401263-C-CT 20×T***
58848117-G-C 56742754-C-G ***
18932936-T-TA 16821056-T-TA 11×A***
13488547-G-A 11332871-G-A ***
13455786-G-C,T 11300110-G-C,T ***
59026729-T-TAA 56880582-T-TAA 9×A***
10789534-CTTCAG-C ***
13488653-C-A 11332977-C-A ***
13213877-G-T 11058201-G-T ***
3256138-ATT-A 3388097-ATT-A 15×T***
19270537-CA-C,CAA 17158657-CA-C,CAA 21×A***
10986803-TAATTTCA-T ***
2718881-CTT-C,CT 2850840-CTT-C,CT 21×T***
10986811-C-A ***
5267536-ATTTT-A 5399495-ATTTT-A 22×T***
7337802-C-A 7469761-C-A ***
56871623-T-TA 9×A***
13869380-G-C 11748674-G-C ***
18891129-C-T 16779249-C-T ***
22529881-G-A 20367995-G-A FTB46357 ***
10661769-C-A ***
7269610-CTTTTT-C,CTTT 7401569-CTTTTT-C,CTTT 22×T***
5231890-CTTT-C 5363849-CTTT-C 22×T***
18891126-G-A 16779246-G-A ***
11021045-C-T ***
15717979-T-G 13606099-T-G ***
5965998-TA-T 6097957-TA-T ***
6654595-T-TG 6786554-T-TG ***
10900003-T-G ***
10929639-T-A ***
10674025-G-A,T ***
10754957-C-T ***
10987773-C-G ***
10667024-C-G ***
10895806-C-T ***
10961577-C-T ***
56871652-GAGA-T ***
10987783-C-G ***
10849658-C-A ***
11000415-T-C ***
22040881-CAAA-C 19878995-CAAA-C 19×A***
13483329-A-C 11327653-A-C ***
10995841-C-T ***
10961587-C-T ***
10686658-CTCCTT-C,CTCCAA ***
13488836-T-G 11333160-T-G ***
10899039-C-T ***
11648853-T-G ***
7108615-G-GTA 7240574-G-GTA 9×TA***
10024052-CTCTG-C 10186443-CTCTG-C ***
7275188-T-TA 7407147-T-TA 20×A***
13466304-G-C 11310628-G-C ***
10663210-G-C,T ***
13692749-C-G 11537073-C-G ***
17527354-GTATA-G 15415474-GTATA-G 10×TA***
56821561-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 8478131011785081790338033721
Kit: 8478131504239794048218335106
Used in age calculations1504239794048218335106
Counts of SNPs32
Variant counts last updated 2022-07-30 03:29:59.



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