Wangermez
BigY2: E2300MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 E2300 |
---|---|---|---|---|---|---|---|---|
19839153-C-T | 17727273-C-T | P5_Prx | A* | |||||
9129113-G-A | 9291504-G-A | BY78360 | Y | + | ||||
14300322-G-A | 12179616-G-A | BY94677 | Y | + | ||||
15308057-G-A | 13196159-G-A | BY100720 | Y | Y | + | |||
15798629-C-A | 13686749-C-A | BY104181 | Y | Y | + | |||
16269624-C-A | 14157744-C-A | BY106560 | Y | Y | + | |||
16367483-A-G | 14255603-A-G | BY107274 | Y | Y | + | |||
22580820-C-T | 20418934-C-T | BY139253 | Y | Y | + | |||
4438742-T-C | 4570701-T-C | ** | ||||||
22471516-G-T | 20309630-G-T | PF2438 | FGC18914 | DYZ19 | ** | |||
18540071-C-A | 16428191-C-A | ** | ||||||
13976836-G-C | 11856130-G-C | ** | ||||||
19899645-G-A | 17787765-G-A | P5_Prx | ** | |||||
21464528-C-A | 19302642-C-A | ** | ||||||
10807049-ATTC-A | ** | |||||||
19271564-G-A | 17159684-G-A | ** | ||||||
17843091-ATTTT-A | 15731211-ATTTT-A | 18×T | ** | |||||
14934306-CTTTTT-C | 12822371-CTTTTT-C | 15×T | ** | |||||
23241975-GTA-G | 21080089-GTA-G | ** | ||||||
17210902-C-A | 15099022-C-A | ** | ||||||
10916249-G-T | ** | |||||||
9231585-C-A | 9393976-C-A | ** | ||||||
5188714-C-A | 5320673-C-A | ** | ||||||
10880903-C-A | ** | |||||||
13460687-G-C | 11305011-G-C | ** | ||||||
2810419-C-T | 2942378-C-T | ** | ||||||
14727343-A-G | 12615411-A-G | ** | ||||||
22629704-C-A | 20467818-C-A | ** | ||||||
14380231-C-A | 12259527-C-A | ** | ||||||
56848858-C-A | ** | |||||||
10763010-C-G | ** | |||||||
10780534-A-T | ** | |||||||
10780537-CCATTATTTTA-C | ** | |||||||
10780565-T-A | ** | |||||||
10929611-C-A | ** | |||||||
24671157-G-A | 22525010-G-A | P3_b2 | 8×A | ** | ||||
22816364-CTCA-C | 20654478-CTCA-C | ** | ||||||
7613833-GA-G | 7745792-GA-G | 31×A | ** | |||||
10776098-T-G | ** | |||||||
11014625-A-G | ** | |||||||
11014668-T-CC | ** | |||||||
11014678-C-T | ** | |||||||
11014710-T-C | ** | |||||||
11014718-C-G | ** | |||||||
14667801-C-A | 12555866-C-A | ** | ||||||
14608123-C-A | 12496325-C-A | ** | ||||||
6096977-C-A | 6228936-C-A | ** | ||||||
9544152-TG-T | 9706543-TG-T | IR3_Prx | ** | |||||
23007203-C-CT | 20845317-C-CT | 8×T | ** | |||||
11026082-C-T | ** | |||||||
10770407-T-A | ** | |||||||
10924486-C-A | ** | |||||||
27561660-T-TA | 25415513-T-TA | P1_Y2 | 11×A | ** | ||||
10980806-C-A | ** | |||||||
10866042-C-A | ** | |||||||
4389404-C-A | 4521363-C-A | 21×A | ** | |||||
19043152-C-A | 16931272-C-A | ** | ||||||
5387430-CAAAA-C | 5519389-CAAAA-C | 18×A | ** | |||||
6816546-G-GAA | 6948505-G-GAA | 22×A | ** | |||||
8343049-C-A | 8475008-C-A | ** | ||||||
15128140-A-T | 13016227-A-T | ** | ||||||
10762972-A-T | ** | |||||||
7319217-C-A | 7451176-C-A | ** | ||||||
13611143-A-T | 11455467-A-T | ** | ||||||
13611146-C-T | 11455470-C-T | ** | ||||||
13611152-T-A | 11455476-T-A | ** | ||||||
13611155-C-T | 11455479-C-T | ** | ||||||
10763032-A-C | ** | |||||||
56848766-G-A | ** | |||||||
10959483-C-A | ** | |||||||
22816182-A-G | 20654296-A-G | ** | ||||||
4139051-G-T | 4271010-G-T | ** | ||||||
28537168-C-A | 26391021-C-A | ** | ||||||
11012047-C-A | ** | |||||||
11643640-T-A | ** | |||||||
21456143-C-A | 19294257-C-A | ** | ||||||
9764225-A-G | 9926616-A-G | ** | ||||||
23097970-C-A | 20936084-C-A | ** | ||||||
28726088-C-A | 26579941-C-A | ** | ||||||
20570264-C-A | 18408378-C-A | P5_Dst | ** | |||||
4534300-GT-G | 4666259-GT-G | 10×T | ** | |||||
17770293-C-A | 15658413-C-A | ** | ||||||
23185980-C-T | 21024094-C-T | 13×T | ** | |||||
22797701-AT-A | 20635815-AT-A | ** | ||||||
10756643-G-C | ** | |||||||
22884945-AT-A | 20723059-AT-A | 9×T | ** | |||||
4282597-A-G | 4414556-A-G | ** | ||||||
2773719-C-A | 2905678-C-A | ** | ||||||
22193081-C-A | 20031195-C-A | ** | ||||||
3609681-C-A | 3741640-C-A | ** | ||||||
7310668-C-A | 7442627-C-A | ** | ||||||
19302660-G-T | 17190780-G-T | ** | ||||||
11672562-C-A | ** | |||||||
6384516-C-A | 6516475-C-A | ** | ||||||
16056919-C-T | 13945039-C-T | ** | ||||||
13643384-G-A | 11487708-G-A | ** | ||||||
5603746-C-A | 5735705-C-A | ** | ||||||
21911215-G-T | 19749329-G-T | ** | ||||||
17786875-C-A | 15674995-C-A | ** | ||||||
20424822-A-C | 18262936-A-C | P5_Dst | ** | |||||
6765741-C-A | 6897700-C-A | ** | ||||||
5976968-C-A | 6108927-C-A | ** | ||||||
15221083-ATTTT-A | 13109169-ATTTT-A | 18×T | ** | |||||
14549697-C-A | 12437898-C-A | ** | ||||||
21371072-C-A | 19209186-C-A | ** | ||||||
8080264-C-T | 8212223-C-T | ** | ||||||
3122353-C-A | 3254312-C-A | ** | ||||||
13196455-C-A | 11040779-C-A | ** | ||||||
4302425-C-A | 4434384-C-A | FTA13972 | ** | |||||
10763026-C-A | ** | |||||||
10651882-T-C | ** | |||||||
15937080-C-A | 13825200-C-A | ** | ||||||
23188162-G-T | 21026276-G-T | ** | ||||||
3267281-C-A | 3399240-C-A | ** | ||||||
14499575-G-T | 12387780-G-T | ** | ||||||
17504930-C-A | 15393050-C-A | ** | ||||||
19448361-C-A | 17336481-C-A | ** | ||||||
27435599-G-T | 25289452-G-T | P1_Y2 | ** | |||||
4080954-C-A | 4212913-C-A | ** | ||||||
15541684-G-C | 13429804-G-C | ** | ||||||
14459903-C-A | 12339176-C-A | ** | ||||||
16027810-G-A | 13915930-G-A | ** | ||||||
8735173-C-A | 8867132-C-A | ** | ||||||
18661648-A-G | 16549768-A-G | ** | ||||||
14532267-C-A | 12420468-C-A | FT53612 | ** | |||||
22518326-C-A | 20356440-C-A | ** | ||||||
7202187-C-A | 7334146-C-A | ** | ||||||
27535291-G-T | 25389144-G-T | P1_Y2 | ** | |||||
10685341-C-A | ** | |||||||
2651900-TTTG-T | 2783859-TTTG-T | ** | ||||||
28513810-C-A | 26367663-C-A | ** | ||||||
3271445-CTT-C | 3403404-CTT-C | 10×T | ** | |||||
9461758-C-A | 9624149-C-A | ** | ||||||
14099820-C-A | 11979114-C-A | ** | ||||||
13226841-C-A | 11071165-C-A | ** | ||||||
14511884-C-A | 12400089-C-A | ** | ||||||
2854857-C-A | 2986816-C-A | ** | ||||||
11014107-C-T | ** | |||||||
5869966-G-GTTT | 6001925-G-GTTT | 15×T | ** | |||||
9344521-C-A | 9506912-C-A | ** | ||||||
10968996-C-T | FGC77528 | ** | ||||||
4075583-G-T | 4207542-G-T | ** | ||||||
10684211-T-C | ** | |||||||
4672310-C-A | 4804269-C-A | ** | ||||||
10769826-C-A | ** | |||||||
7717644-T-C | 7849603-T-C | ** | ||||||
10879797-C-A | ** | |||||||
5969111-C-A | 6101070-C-A | ** | ||||||
21939760-C-A | 19777874-C-A | ** | ||||||
16926077-C-A | 14814197-C-A | ** | ||||||
13487692-C-T | 11332016-C-T | ** | ||||||
15406795-C-A | 13294915-C-A | ** | ||||||
20700730-AT-A | 18538844-AT-A | P4_Prx | 9×T | ** | ||||
13324769-C-T | 11169093-C-T | ** | ||||||
10968929-C-A | ** | |||||||
19544273-C-A | 17432393-C-A | ** | ||||||
15218633-C-A | 13106719-C-A | ** | ||||||
5130250-C-A | 5262209-C-A | ** | ||||||
4756667-C-A | 4888626-C-A | ** | ||||||
10016096-C-A | 10178487-C-A | ** | ||||||
10835965-G-T | ** | |||||||
10791046-T-A | ** | |||||||
10763023-C-T | ** | |||||||
18933717-C-A | 16821837-C-A | ** | ||||||
17545835-C-T | 15433955-C-T | ** | ||||||
56742652-G-C | ** | |||||||
16119964-T-TTTCC | 14008084-T-TTTCC | P8_Prx | ** | |||||
6064034-C-A | 6195993-C-A | ** | ||||||
10684164-C-A | ** | |||||||
10684166-T-C | ** | |||||||
10684173-C-CCACT | ** | |||||||
10684195-A-C | ** | |||||||
10684204-C-T | ** | |||||||
14344050-G-A | 12223345-G-A | ** | ||||||
10762994-T-TCCATC | ** | |||||||
17703232-C-A | 15591352-C-A | ** | ||||||
5246393-C-A | 5378352-C-A | ** | ||||||
16926118-A-G | 14814238-A-G | ** | ||||||
19146619-C-A | 17034739-C-A | ** | ||||||
7428108-C-A | 7560067-C-A | ** | ||||||
19829454-ATTT-A | 17717574-ATTT-A | P5_Prx | 12×T | ** | ||||
13976813-T-G | 11856107-T-G | ** | ||||||
17883870-G-A | 15771990-G-A | ** | ||||||
10983777-C-A | ** | |||||||
15789004-C-A | 13677124-C-A | ** | ||||||
4665244-C-A | 4797203-C-A | ** | ||||||
10655895-GTTCCA-G | ** | |||||||
21583792-C-A | 19421906-C-A | ** | ||||||
13487700-C-T | 11332024-C-T | ** | ||||||
16506088-A-T | 14394208-A-T | ** | ||||||
16702224-C-A | 14590344-C-A | FTB58182 | ** | |||||
11037931-T-C | ** | |||||||
7040563-G-T | 7172522-G-T | ** | ||||||
10776425-G-T | ** | |||||||
13280687-C-A | 11125011-C-A | ** | ||||||
22979516-C-A | 20817630-C-A | ** | ||||||
18321448-T-TG | 16209568-T-TG | P6_Prx | ** | |||||
16847669-C-A | 14735789-C-A | ** | ||||||
56849682-G-T | ** | |||||||
7307966-C-A | 7439925-C-A | ** | ||||||
2806236-G-GA | 2938195-G-GA | ** | ||||||
2840106-A-G | 2972065-A-G | ** | ||||||
2866370-C-A | 2998329-C-A | ** | ||||||
2916802-G-T | 3048761-G-T | ** | ||||||
2935295-C-A | 3067254-C-A | ** | ||||||
2989330-G-T | 3121289-G-T | ** | ||||||
3016678-C-T | 3148637-C-T | ** | ||||||
3048171-G-A | 3180130-G-A | ** | ||||||
3070568-G-A | 3202527-G-A | ** | ||||||
3082741-T-TA | 3214700-T-TA | 8×A | ** | |||||
3122286-A-G | 3254245-A-G | ** | ||||||
3190729-C-A | 3322688-C-A | ** | ||||||
3254869-A-G | 3386828-A-G | ** | ||||||
3270061-G-T | 3402020-G-T | ** | ||||||
3275973-G-A | 3407932-G-A | ** | ||||||
3309003-G-T | 3440962-G-T | ** | ||||||
3339626-G-T | 3471585-G-T | ** | ||||||
3375596-C-A | 3507555-C-A | ** | ||||||
3473215-G-C | 3605174-G-C | ** | ||||||
3540477-G-T | 3672436-G-T | ** | ||||||
3572906-A-G | 3704865-A-G | ** | ||||||
3573179-T-A | 3705138-T-A | ** | ||||||
3604155-C-A | 3736114-C-A | ** | ||||||
3660235-G-T | 3792194-G-T | ** | ||||||
3797906-C-A | 3929865-C-A | ** | ||||||
3947821-G-T | 4079780-G-T | ** | ||||||
3973199-A-T | 4105158-A-T | ** | ||||||
3980053-C-A | 4112012-C-A | ** | ||||||
3985862-G-C | 4117821-G-C | ** | ||||||
3985914-G-A | 4117873-G-A | ** | ||||||
4035360-T-C | 4167319-T-C | ** | ||||||
4038856-G-T | 4170815-G-T | ** | ||||||
4049653-C-A | 4181612-C-A | ** | ||||||
4080859-C-T | 4212818-C-T | ** | ||||||
4081581-C-A | 4213540-C-A | ** | ||||||
4138466-A-T | 4270425-A-T | ** | ||||||
4150171-C-A | 4282130-C-A | ** | ||||||
4366126-G-T | 4498085-G-T | ** | ||||||
4426465-A-G | 4558424-A-G | ** | ||||||
4433179-C-A | 4565138-C-A | ** | ||||||
4434012-C-A | 4565971-C-A | ** | ||||||
4441699-G-T | 4573658-G-T | ** | ||||||
4444486-A-G | 4576445-A-G | ** | ||||||
4500606-G-A | 4632565-G-A | FGC41298 | ** | |||||
4506513-C-T | 4638472-C-T | ** | ||||||
4536594-G-T | 4668553-G-T | FGC7163 | ** | |||||
4557737-G-T | 4689696-G-T | FT258839 | ** | |||||
4566767-A-G | 4698726-A-G | ** | ||||||
4724975-C-T | 4856934-C-T | ** | ||||||
4781230-G-A | 4913189-G-A | ** | ||||||
4796282-GA-G | 4928241-GA-G | 9×A | ** | |||||
4888329-A-C | 5020288-A-C | ** | ||||||
4919953-C-A | 5051912-C-A | ** | ||||||
5064567-T-A | 5196526-T-A | ** | ||||||
5073013-G-T | 5204972-G-T | ** | ||||||
5099222-GT-G | 5231181-GT-G | ** | ||||||
5108037-C-T | 5239996-C-T | ** | ||||||
5200872-TA-T | 5332831-TA-T | ** | ||||||
5236659-G-T | 5368618-G-T | ** | ||||||
5288945-TAA-T | 5420904-TAA-T | 13×A | ** | |||||
5336988-C-A | 5468947-C-A | ** | ||||||
5367701-C-A | 5499660-C-A | ** | ||||||
5425684-T-A | 5557643-T-A | ** | ||||||
5425721-G-T | 5557680-G-T | ** | ||||||
5446133-CA-C | 5578092-CA-C | ** | ||||||
5449448-A-T | 5581407-A-T | ** | ||||||
5518248-G-T | 5650207-G-T | ** | ||||||
5595963-G-T | 5727922-G-T | ** | ||||||
5620813-T-A | 5752772-T-A | ** | ||||||
5720521-A-C | 5852480-A-C | ** | ||||||
5752655-C-A | 5884614-C-A | ** | ||||||
5829279-T-A | 5961238-T-A | ** | ||||||
5948861-C-A | 6080820-C-A | ** | ||||||
5981198-C-T | 6113157-C-T | ** | ||||||
6001517-G-A | 6133476-G-A | ** | ||||||
6030235-T-C | 6162194-T-C | ** | ||||||
6126029-A-T | 6257988-A-T | ** | ||||||
6366340-AT-A | 6498299-AT-A | ** | ||||||
6367601-G-T | 6499560-G-T | ** | ||||||
6413486-C-A | 6545445-C-A | ** | ||||||
6479351-T-C | 6611310-T-C | ** | ||||||
6490742-C-A | 6622701-C-A | ** | ||||||
6516878-C-A | 6648837-C-A | ** | ||||||
6527646-G-T | 6659605-G-T | ** | ||||||
6541015-C-A | 6672974-C-A | ** | ||||||
6654282-T-G | 6786241-T-G | ** | ||||||
6798882-TGCTGTG-T | 6930841-TGCTGTG-T | ** | ||||||
7001428-A-G | 7133387-A-G | ** | ||||||
7150461-C-A | 7282420-C-A | ** | ||||||
7256577-A-T | 7388536-A-T | ** | ||||||
7319158-G-A | 7451117-G-A | ** | ||||||
7829055-C-T | 7961014-C-T | ** | ||||||
8073125-A-T | 8205084-A-T | ** | ||||||
8167737-T-G | 8299696-T-G | ** | ||||||
8345506-T-A | 8477465-T-A | ** | ||||||
8371532-T-A | 8503491-T-A | ** | ||||||
8371583-T-C | 8503542-T-C | ** | ||||||
8660545-G-A | 8792504-G-A | ** | ||||||
9056654-C-T | ** | |||||||
9063345-G-T | 9225736-G-T | ** | ||||||
9408451-C-G | 9570842-C-G | ** | ||||||
9413964-T-C | 9576355-T-C | ** | ||||||
9618387-A-G | 9780778-A-G | IR3_Prx | ** | |||||
9764224-C-A | 9926615-C-A | ** | ||||||
9764230-G-T | 9926621-G-T | ** | ||||||
9773464-C-A | 9935855-C-A | ** | ||||||
9933927-T-G | 10096318-T-G | ** | ||||||
9968898-G-A | 10131289-G-A | ** | ||||||
10011507-C-G | 10173898-C-G | ** | ||||||
10032285-A-C | 10194676-A-C | ** | ||||||
10032569-C-A | 10194960-C-A | ** | ||||||
10040987-T-C | 10203378-T-C | ** | ||||||
10665778-G-T | FT428602 | ** | ||||||
10667112-T-C | ** | |||||||
10667762-G-A | ** | |||||||
10677639-T-C | ** | |||||||
10683559-C-A | ** | |||||||
10685361-C-A | ** | |||||||
10752834-C-T | ** | |||||||
10754074-C-A | ** | |||||||
10766341-C-A | ** | |||||||
10767999-G-T | ** | |||||||
10777247-G-A | FT430744 | ** | ||||||
10778714-C-T | ** | |||||||
10789124-A-T | ** | |||||||
10799683-G-A | ** | |||||||
10802331-C-A | ** | |||||||
10819991-G-A | ** | |||||||
10820386-C-A | ** | |||||||
10840582-C-A | ** | |||||||
10845596-A-G | ** | |||||||
10859519-C-A | ** | |||||||
10888624-A-ATTCT | ** | |||||||
10888648-C-T | ** | |||||||
10888649-A-G | ** | |||||||
10915680-G-T | ** | |||||||
10943643-T-A | ** | |||||||
10951498-C-A | ** | |||||||
10959521-G-A | ** | |||||||
10974911-C-G | ** | |||||||
10991525-T-C | ** | |||||||
11002017-C-A | ** | |||||||
11009323-T-A | ** | |||||||
11009944-T-C | ** | |||||||
11031949-T-C | ** | |||||||
11033328-C-A | ** | |||||||
13213417-C-T | 11057741-C-T | ** | ||||||
13228121-G-A | 11072445-G-A | ** | ||||||
13229761-A-G | 11074085-A-G | ** | ||||||
13429605-C-A | 11273929-C-A | ** | ||||||
13433291-G-A | 11277615-G-A | ** | ||||||
13487721-AC-A | 11332045-AC-A | ** | ||||||
13487725-G-GC | 11332049-G-GC | ** | ||||||
13487738-C-A | 11332062-C-A | ** | ||||||
13504565-G-T | 11348889-G-T | ** | ||||||
13565499-C-A | 11409823-C-A | ** | ||||||
13577944-A-G | 11422268-A-G | ** | ||||||
13583218-C-T | 11427542-C-T | ** | ||||||
13617827-C-A | 11462151-C-A | ** | ||||||
11651541-C-A | ** | |||||||
11653627-GA-G | ** | |||||||
11664075-G-A | ** | |||||||
13798652-T-C | 11677946-T-C | ** | ||||||
13960831-G-C | 11840125-G-C | ** | ||||||
13969821-C-A | 11849115-C-A | ** | ||||||
13973158-G-T | 11852452-G-T | ** | ||||||
13976797-A-AT | 11856091-A-AT | ** | ||||||
13976802-C-T | 11856096-C-T | ** | ||||||
13976803-A-G | 11856097-A-G | ** | ||||||
13976809-A-G | 11856103-A-G | ** | ||||||
13976814-C-T | 11856108-C-T | ** | ||||||
13976819-G-A | 11856113-G-A | ** | ||||||
13976842-A-T | 11856136-A-T | ** | ||||||
13976852-A-C | 11856146-A-C | ** | ||||||
13976853-G-A | 11856147-G-A | ** | ||||||
13976862-C-T | 11856156-C-T | ** | ||||||
13976869-C-T | 11856163-C-T | ** | ||||||
13976871-G-A | 11856165-G-A | ** | ||||||
13976886-C-T | 11856180-C-T | ** | ||||||
14032402-C-A | 11911696-C-A | ** | ||||||
14086133-C-A | 11965427-C-A | ** | ||||||
14107693-C-A | 11986987-C-A | ** | ||||||
14367899-G-T | 12247195-G-T | ** | ||||||
14518906-C-A | 12407107-C-A | ** | ||||||
14525477-TC-T | 12413678-TC-T | ** | ||||||
14561682-C-A | 12449883-C-A | ** | ||||||
14562906-G-T | 12451106-G-T | ** | ||||||
14562961-T-C | 12451161-T-C | ** | ||||||
14607946-A-G | 12496148-A-G | ** | ||||||
14712274-G-T | 12600341-G-T | ** | ||||||
14712400-T-G | 12600467-T-G | ** | ||||||
14959612-C-A | 12847687-C-A | ** | ||||||
15177663-C-A | 13065749-C-A | ** | ||||||
15178464-CA-C | 13066550-CA-C | ** | ||||||
15218841-G-A | 13106927-G-A | ** | ||||||
15370775-C-T | 13258895-C-T | ** | ||||||
15575010-C-G | 13463130-C-G | ** | ||||||
15655538-A-G | 13543658-A-G | ** | ||||||
15676893-G-A | 13565013-G-A | ** | ||||||
15729001-A-G | 13617121-A-G | ** | ||||||
15987458-C-A | 13875578-C-A | ** | ||||||
16052361-C-T | 13940481-C-T | ** | ||||||
16059084-C-A | 13947204-C-A | ** | ||||||
16075143-A-G | 13963263-A-G | ** | ||||||
16382249-G-A | 14270369-G-A | ** | ||||||
16423751-C-A | 14311871-C-A | ** | ||||||
16480834-C-A | 14368954-C-A | ** | ||||||
16575052-A-T | 14463172-A-T | ** | ||||||
16617019-C-A | 14505139-C-A | ** | ||||||
16652121-C-A | 14540241-C-A | ** | ||||||
16702825-C-T | 14590945-C-T | ** | ||||||
16705563-T-A | 14593683-T-A | ** | ||||||
17070535-T-G | 14958655-T-G | ** | ||||||
17270555-G-T | 15158675-G-T | ** | ||||||
17306690-C-A | 15194810-C-A | ** | ||||||
17426427-T-C | 15314547-T-C | ** | ||||||
17475132-G-A | 15363252-G-A | ** | ||||||
17481587-A-G | 15369707-A-G | ** | ||||||
17511671-C-A | 15399791-C-A | ** | ||||||
17547813-C-A | 15435933-C-A | ** | ||||||
17548056-GC-G | 15436176-GC-G | ** | ||||||
17548136-G-T | 15436256-G-T | ** | ||||||
17567583-C-A | 15455703-C-A | ** | ||||||
17779507-A-G | 15667627-A-G | ** | ||||||
17849441-G-T | 15737561-G-T | ** | ||||||
18518207-A-T | 16406327-A-T | P6_Dst | ** | |||||
18518268-G-GTTTTT | 16406388-G-GTTTTT | P6_Dst | 24×T | ** | ||||
18661637-TTG-T | 16549757-TTG-T | ** | ||||||
18794180-T-A | 16682300-T-A | ** | ||||||
18928956-C-G | 16817076-C-G | ** | ||||||
19064246-G-T | 16952366-G-T | ** | ||||||
19071173-C-A | 16959293-C-A | ** | ||||||
19088322-C-T | 16976442-C-T | ** | ||||||
19235493-C-A | 17123613-C-A | ** | ||||||
19252053-G-T | 17140173-G-T | ** | ||||||
19377306-G-A | 17265426-G-A | ** | ||||||
19619478-A-G | 17507598-A-G | P5_Prx | ** | |||||
19829444-T-A | 17717564-T-A | P5_Prx | ** | |||||
20143460-T-C | 18031580-T-C | P5_Dst | ** | |||||
20433521-T-A | 18271635-T-A | P5_Dst | ** | |||||
20482046-G-GT | 18320160-G-GT | P5_Dst | ** | |||||
20482082-C-T | 18320196-C-T | P5_Dst | ** | |||||
20673814-T-G | 18511928-T-G | P4_Prx | ** | |||||
20755581-T-A | 18593695-T-A | P4_Prx | ** | |||||
21037405-T-C | 18875519-T-C | ** | ||||||
21068317-A-G | 18906431-A-G | ** | ||||||
21200191-C-A | 19038305-C-A | ** | ||||||
21273081-G-T | 19111195-G-T | ** | ||||||
21380863-T-C | 19218977-T-C | ** | ||||||
21394479-T-A | 19232593-T-A | ** | ||||||
21435300-T-A | 19273414-T-A | ** | ||||||
21503079-G-A | 19341193-G-A | ** | ||||||
21523334-G-T | 19361448-G-T | ** | ||||||
21584014-G-T | 19422128-G-T | ** | ||||||
22063943-C-A | 19902057-C-A | ** | ||||||
22063956-A-T | 19902070-A-T | ** | ||||||
22113777-G-A | 19951891-G-A | ** | ||||||
22205467-C-A | 20043581-C-A | ** | ||||||
22220422-G-T | 20058536-G-T | DYZ19 | ** | |||||
22640448-G-T | 20478562-G-T | ** | ||||||
22798289-T-C | 20636403-T-C | ** | ||||||
22851519-T-A | 20689633-T-A | ** | ||||||
22979657-C-A | 20817771-C-A | ** | ||||||
23005503-G-A | 20843617-G-A | ** | ||||||
23006769-T-G | 20844883-T-G | ** | ||||||
23029772-T-A | 20867886-T-A | ** | ||||||
23100036-C-A | 20938150-C-A | ** | ||||||
23143530-G-T | 20981644-G-T | ** | ||||||
23226189-G-C | 21064303-G-C | ** | ||||||
23449195-C-A | 21287309-C-A | ** | ||||||
23464741-C-A | 21302855-C-A | ** | ||||||
23464792-C-A | 21302906-C-A | ** | ||||||
23569255-G-A | 21407369-G-A | ** | ||||||
24405230-C-A | 22259083-C-A | ** | ||||||
24406380-G-T | 22260233-G-T | ** | ||||||
24407291-A-G | 22261144-A-G | ** | ||||||
27240326-T-A | 25094179-T-A | P1_g3 | ** | |||||
27584507-C-T | 25438360-C-T | P1_Y2 | ** | |||||
27618082-G-T | 25471935-G-T | P1_Y2 | ** | |||||
27821122-G-GT | 25674975-G-GT | P1_Y2 | ** | |||||
27861936-A-G | 25715789-A-G | P1_Y2 | ** | |||||
28396889-C-A | 26250742-C-A | P1_gr2 | ** | |||||
28538481-C-A | 26392334-C-A | ** | ||||||
28614071-G-T | 26467924-G-T | ** | ||||||
28715110-T-C | 26568963-T-C | ** | ||||||
28737082-C-A | 26590935-C-A | ** | ||||||
56756801-A-G | ** | |||||||
56840749-G-C | ** | |||||||
56850947-G-A | ** | |||||||
56866747-A-G | ** | |||||||
3172-C-T | ** | |||||||
14020334-TA-T | 11899628-TA-T | 10×A | *** | |||||
10967530-T-G | *** | |||||||
10667004-C-G | *** | |||||||
23274739-C-A | 21112853-C-A | 18×T | *** | |||||
10987845-A-T | *** | |||||||
56825880-C-CATTCCGTTACTTTTCATTCC,T | *** | |||||||
56834976-C-CAGTT | *** | |||||||
10859594-A-G | *** | |||||||
10807046-T-TCTA | *** | |||||||
10776044-C-G | *** | |||||||
5828974-C-A | 5960933-C-A | *** | ||||||
23188690-C-A | 21026804-C-A | FTB38666 | *** | |||||
13447179-C-A | 11291503-C-A | *** | ||||||
10673899-A-T | *** | |||||||
16432562-C-A | 14320682-C-A | *** | ||||||
8279938-C-A | 8411897-C-A | *** | ||||||
5242386-C-A | 5374345-C-A | *** | ||||||
6953238-G-C | 7085197-G-C | BY12191 | BY12190 | *** | ||||
10899468-C-A | *** | |||||||
14458531-C-A | 12337804-C-A | *** | ||||||
10828715-C-T | *** | |||||||
10859614-A-G | *** | |||||||
4240450-C-A | 4372409-C-A | *** | ||||||
9462035-C-A | 9624426-C-A | *** | ||||||
13469525-A-C | 11313849-A-C | *** | ||||||
7295843-C-A | 7427802-C-A | *** | ||||||
56835822-C-A | *** | |||||||
18201272-C-A | 16089392-C-A | *** | ||||||
10659978-C-A | FT428442 | *** | ||||||
4236037-T-A | 4367996-T-A | *** | ||||||
5800254-G-A | 5932213-G-A | *** | ||||||
7156902-C-T | 7288861-C-T | *** | ||||||
7670704-G-T | 7802663-G-T | *** | ||||||
8057169-G-GTA,GTATA | 8189128-G-GTA,GTATA | 12×TA | *** | |||||
10804007-A-T | FT431936 | *** | ||||||
10808138-C-A | *** | |||||||
10859592-C-T | *** | |||||||
10878275-ATTCCATTCCA-A,ATTCCATTCCT | *** | |||||||
13469539-C-A | 11313863-C-A | *** | ||||||
14557956-C-A | 12446157-C-A | *** | ||||||
16096026-C-A | 13984146-C-A | *** | ||||||
18520582-C-A | 16408702-C-A | P6_Dst | *** | |||||
21496580-G-T | 19334694-G-T | *** | ||||||
21923302-TTTTTTTTTAGA-T | 19761416-TTTTTTTTTAGA-T | *** | ||||||
22134118-G-T | 19972232-G-T | *** | ||||||
28111604-C-A | 25965457-C-A | P1_Y2 | *** | |||||
56756855-AATGGAATGGAATGGAATGGAATGGAATGGG-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.