Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > BY907 > FGC14113 > ~25983735-C-A

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
10938279-T-C A+
10938286-G-A A+
20427765-C-T 18265879-C-T P5_Dst A+
10938285-T-C A+
6310853-G-GCA 6442812-G-GCA IR3_Dst 17×CAA*
18300103-C-A 16188223-C-A P6_Prx A*
16103841-C-T 13991961-C-T P8_Prx A*
16121357-T-C 14009477-T-C P8_Prx A*
13449047-C-T 11293371-C-T A*
10999906-T-C A*
18353568-C-CAGAG 16241688-C-CAGAG P6_Prx A*
28807417-G-A 26661270-G-A A*
19752009-G-A 17640129-G-A P5_Prx A*
19929730-T-TA 17817850-T-TA P5_Prx 9×AA*
10938349-T-C A*
20280154-T-C 18118268-T-C BY212129 P5_Dst 8×CTTCA*
20697859-G-GT 18535973-G-GT P4_Prx 9×TA*
13449715-A-T 11294039-A-T A*
10653490-T-A A*
25970734-T-TTC 23824587-T-TTC P1_Y1 13×TCA*
10938356-C-G A*
16495184-T-C 14383304-T-C BY197412 YY+
16506132-G-T 14394252-G-T BY197415 YY+
8605857-G-A 8737816-G-A BY197106 YY+
6779296-G-T 6911255-G-T BY196954 YY+
6811445-T-C 6943404-T-C BY196956 YY+
17217857-T-A 15105977-T-A BY197467 YY+
17357657-G-C 15245777-G-C BY197479 YY+
6988375-T-G 7120334-T-G BY196970 YY+
8577117-A-C 8709076-A-C BY197103 YY+
15322952-A-G 13211070-A-G BY197320 YY+
15031580-A-G 12919668-A-G BY197296 YY+
17664097-AG-A 15552217-AG-A +
28548167-C-A 26402020-C-A BY197872 Y+
9892955-T-C 10055346-T-C BY197181 YY+
19032890-C-A 16921010-C-A BY197601 YY+
18825990-A-G 16714110-A-G BY197586 YY+
8283755-T-C 8415714-T-C BY197069 YY+
14968324-A-T 12856399-A-T BY197289 YY+
17943368-C-T 15831488-C-T BY197534 YY+
16486150-T-A 14374270-T-A BY197411 YY+
14138336-T-C 12017630-T-C BY197214 YY+
17868734-T-G 15756854-T-G BY197526 YY+
13845361-A-G 11724655-A-G BY197192 +
8171165-C-T 8303124-C-T BY197057 YY+
23566644-C-G 21404758-C-G BY197823 YY+
23323819-G-A 21161933-G-A BY197803 YY+
15252737-G-T 13140823-G-T BY197314 Y+
22569772-G-A 20407886-G-A YY+
22476002-G-T 20314116-G-T BY223486 DYZ19 +
22474263-G-T 20312377-G-T BY196885 DYZ19 +
22479305-G-T 20317419-G-T BY224213 DYZ19 +
22032821-T-C 19870935-T-C BY197729 YY+
8670087-T-A 8802046-T-A BY197113 YY+
21778919-T-A 19617033-T-A BY197715 YY+
21772119-C-CA 19610233-C-CA +
28734671-A-G 26588524-A-G BY197875 Y+
21191658-T-G 19029772-T-G BY197669 YY+
20835129-C-G 18673243-C-G BY212780 P4_Gap +
22339312-G-A 20177426-G-A DYZ19 *
5818143-C-CAGATAGAT 5950102-C-CAGATAGAT 11×AGAT*
13811648-C-CAATGG 11690942-C-CAATGG 4×AATGG*
17275835-GAAGCA-G 15163955-GAAGCA-G 6×AAGCA*
7129087-G-GCCCTAA 7261046-G-GCCCTAA *
9540129-GTGTGT-G 9702520-GTGTGT-G IR3_Prx **
10873827-C-A **
10664598-T-A **
10924048-G-T **
10861755-C-A **
10843337-A-C **
10827256-T-C **
10812993-C-A **
10798560-G-T **
10882947-T-C **
10794331-C-G **
10930108-C-A **
10762738-T-C **
10761743-G-T **
10749925-C-A **
10693489-A-G **
10862566-G-T **
10678310-T-C **
13485503-T-G 11329827-T-G **
7254264-C-A 7386223-C-A **
9428151-G-T 9590542-G-T **
5292910-G-A 5424869-G-A **
4148563-C-A 4280522-C-A **
4154389-T-C 4286348-T-C **
4156238-A-G 4288197-A-G **
4229264-A-T 4361223-A-T **
4286003-C-A 4417962-C-A **
4395090-C-T 4527049-C-T **
4417581-C-T 4549540-C-T **
4470514-G-A 4602473-G-A **
4549163-C-A 4681122-C-A **
4795833-G-T 4927792-G-T **
5260873-C-A 5392832-C-A **
5261018-C-A 5392977-C-A **
5462831-C-A 5594790-C-A **
9109642-G-T **
5472139-C-T 5604098-C-T **
5523986-C-A 5655945-C-A **
6268901-C-A 6400860-C-A IR3_Dst **
6475535-C-A 6607494-C-A **
6593587-C-A 6725546-C-A **
6822292-G-A 6954251-G-A **
6934855-G-A 7066814-G-A **
7097908-C-A 7229867-C-A **
7150400-AAT-A 7282359-AAT-A **
8075204-C-A 8207163-C-A **
8314301-C-A 8446260-C-A **
8314328-A-T 8446287-A-T **
8699658-G-A 8831617-G-A **
10934128-C-A **
14539463-C-A 12427664-C-A **
10943627-A-T **
21196510-G-T 19034624-G-T **
19340279-G-A 17228399-G-A **
19340281-G-T 17228401-G-T **
19544306-C-A 17432426-C-A **
19838974-T-C 17727094-T-C P5_Prx **
19842567-C-A 17730687-C-A P5_Prx **
19842581-T-A 17730701-T-A P5_Prx **
19868146-T-TGC 17756266-T-TGC P5_Prx **
19930041-A-T 17818161-A-T P5_Prx **
20004033-C-G 17892153-C-G P5_Prx **
20045278-GAAAGAA-G 17933398-GAAAGAA-G P5_Prx **
20216471-AT-G 18054585-AT-G P5_Dst **
20221654-AAC-A 18059768-AAC-A P5_Dst **
20569529-G-T 18407643-G-T P5_Dst **
21162986-C-A 19001100-C-A **
21807043-C-A 19645157-C-A **
19248516-G-T 17136636-G-T **
21941913-C-A 19780027-C-A **
21957992-G-T 19796106-G-T **
22455828-T-A 20293942-T-A DYZ19 **
22874412-C-A 20712526-C-A **
23875538-A-G 21713652-A-G **
24553419-A-C 22407272-A-C P3_t2 **
26060206-AAGAC-A 23914059-AAGAC-A P1_Y1 **
26102949-T-TG 23956802-T-TG P1_Y1 **
26206326-G-T 24060179-G-T P1_Y1 **
27701781-A-G 25555634-A-G P1_Y2 **
28462193-G-T 26316046-G-T **
28513805-C-A 26367658-C-A **
28556311-G-T 26410164-G-T **
56822551-C-T **
19340210-G-A 17228330-G-A **
19100082-G-T 16988202-G-T **
10944816-C-A **
13984416-C-T 11863710-C-T **
10950310-G-T **
10961251-C-A **
10967769-A-T **
10969085-C-G **
10973818-C-G **
10979540-C-A **
10982705-C-A **
11005615-A-G **
13474434-A-G 11318758-A-G **
11654734-G-T **
11663914-G-T **
11665871-A-C **
13870434-G-A 11749728-G-A **
13898656-T-G 11777950-T-G **
13995953-T-C 11875247-T-C **
18266210-TAAAAAA-T 16154330-TAAAAAA-T 11×A**
14100212-C-A 11979506-C-A **
14539421-C-A 12427622-C-A **
3492844-T-G 3624803-T-G **
14698490-AC-A 12586556-AC-A **
15115592-T-G 13003679-T-G **
15402774-T-TAA 13290894-T-TAA **
15438969-A-G 13327089-A-G **
15729038-C-A 13617158-C-A **
15943412-C-A 13831532-C-A **
16147523-A-G 14035643-A-G P8_Dst **
16575001-G-A 14463121-G-A **
17374408-C-A 15262528-C-A **
17492181-C-A 15380301-C-A **
18266206-T-C 16154326-T-C **
4117569-C-A 4249528-C-A **
56844914-T-C **
3327431-C-G 3459390-C-G **
56749981-G-T **
10878904-C-A **
7150692-CA-C 7282651-CA-C 8×A**
16605065-C-A 14493185-C-A **
10666513-C-T **
10666507-T-C **
8314251-C-G 8446210-C-G **
26121367-G-GTA 23975220-G-GTA P1_Y1 **
21922101-AAAG-A 19760215-AAAG-A **
16063491-A-AT 13951611-A-AT 9×T**
13460309-G-A 11304633-G-A **
11668219-C-A **
10946558-C-A **
11011989-C-CA **
26421480-GT-G 24275333-GT-G P1_Y1 **
6992553-CTTTTTT-C 7124512-CTTTTTT-C 17×T**
16430927-C-A 14319047-C-A **
10795206-C-A **
14255203-C-A 12134497-C-A **
3022657-C-A 3154616-C-A **
20815652-C-A 18653766-C-A P4_Gap **
14727319-ATTTTT-A 12615387-ATTTTT-A 23×T**
10977048-C-A **
10931072-A-C **
3173-C-A **
5577478-C-A 5709437-C-A **
10763015-C-CCATTA **
7310592-T-A 7442551-T-A **
10912786-G-T **
10950856-C-A **
4872499-C-A 5004458-C-A **
10660102-C-T **
15070446-CAAA-C 12958537-CAAA-C 19×A**
28429461-C-A 26283314-C-A P1_gr2 **
11026245-C-A **
8269660-C-A 8401619-C-A **
24575878-T-TC 22429731-T-TC P3_t2 **
10744273-A-T **
58840812-A-G 56750059-T-C **
17504243-G-T 15392363-G-T **
10662494-T-G **
4215823-G-T 4347782-G-T **
13474479-C-T 11318803-C-T **
26834653-A-G 24688506-A-G P1_g2 **
13474450-T-C 11318774-T-C **
13485582-C-A 11329906-C-A **
10688242-C-A **
13485581-T-C 11329905-T-C **
17527327-C-CAT 15415447-C-CAT 8×AT**
7280952-C-T 7412911-C-T 26×T**
20613609-CT-C 18451723-CT-C P4_Prx 13×T**
17622738-A-C 15510858-A-C **
4902210-C-A 5034169-C-A **
18398174-T-C 16286294-T-C P6_Gap 9×AC**
10688236-A-T **
10653858-C-A **
10887313-C-A **
10808862-T-A **
18263856-CAAA-C 16151976-CAAA-C 26×A**
9566727-CAAA-C 9729118-CAAA-C IR3_Prx 13×A**
10998352-A-C **
13303376-A-C 11147700-A-C **
10660088-C-G **
15131941-C-A 13020028-C-A **
10789961-A-C **
10808859-A-C **
9625868-TG-T 9788259-TG-T IR3_Prx **
10808827-T-A **
10756074-A-C **
20501867-G-GT 18339981-G-GT P5_Dst **
4861896-C-A 4993855-C-A **
10791044-C-T **
5189393-C-A 5321352-C-A **
24353156-T-TAA 22207009-T-TAA P3_t1 **
11007904-G-T **
4326594-C-A 4458553-C-A **
6494400-TA-T 6626359-TA-T 9×A**
13474504-T-A 11318828-T-A **
7664524-T-G 7796483-T-G **
7135407-TTG-T 7267366-TTG-T **
25647081-C-A 23500934-C-A P1_b3 **
14366478-G-A 12245773-G-A FT29760 **
5937632-C-CCA 6069591-C-CCA 14×CA**
16652086-C-A 14540206-C-A **
8314291-T-C 8446250-T-C **
10804505-A-C **
16421234-G-A 14309354-G-A **
26059248-A-AG 23913101-A-AG P1_Y1 **
4964729-ATT-A 5096688-ATT-A 34×T**
10662750-C-A **
13474463-G-T 11318787-G-T **
18266208-C-A 16154328-C-A **
19706129-CA-C 17594249-CA-C P5_Prx **
7080937-C-A 7212896-C-A **
25647085-G-T 23500938-G-T P1_b3 **
2708341-C-A 2840300-C-A **
10768097-A-C **
10768118-C-A **
21750583-G-T **
19340241-C-T 17228361-C-T **
19340245-C-T 17228365-C-T **
6765939-C-A 6897898-C-A **
17916043-C-A 15804163-C-A **
21582185-G-T 19420299-G-T **
2986079-C-A 3118038-C-A **
10771206-C-A **
11020226-C-A **
10969495-C-T **
25892212-TG-T 23746065-TG-T P1_Y1 **
19586696-T-TA 17474816-T-TA P5_Prx **
11006747-G-T **
14011318-G-T 11890612-G-T **
21751823-G-T **
6996733-G-GC 7128692-G-GC **
10762894-G-T **
19340250-C-T 17228370-C-T **
27971765-A-C 25825618-A-C P1_Y2 **
10693667-G-T **
15606850-A-G 13494970-A-G **
14719578-TAAAAAAA-T 12607646-TAAAAAAA-T 19×A**
10804499-A-TG **
10804490-ACGCCC-A **
2789413-T-C 2921372-T-C **
10804450-A-G **
5756003-A-G 5887962-A-G **
4960508-C-A 5092467-C-A **
16706165-G-T 14594285-G-T **
10873522-C-A **
15109770-C-A 12997857-C-A **
22997894-C-A 20836008-C-A **
7254366-C-A 7386325-C-A **
4604387-C-A 4736346-C-A **
10763495-C-A **
11003261-C-T **
58983514-C-T 56837367-C-T ***
9944054-G-T 10106445-G-T ***
15323661-CAAAA-C 13211779-CAAAA-C 18×A***
22970177-G-C 20808291-G-C ***
16905870-CAAAA-C 14793990-CAAAA-C 25×A***
28577987-C-A 26431840-C-A ***
58983501-C-A 56837354-C-A ***
58983478-G-T 56837331-G-T ***
18817061-C-A 16705181-C-A BY124070 ***
58983504-C-T 56837357-C-T ***
58983512-A-T 56837365-A-T ***
19394059-CTTT-C 17282179-CTTT-C 37×T***
22286958-A-G 20125072-A-G DYZ19 ***
13253446-C-T 11097770-C-T ***
11008054-C-A ***
10939071-CA-C,CT ***
10793789-C-A ***
16250624-G-GT,GTT 14138744-G-GT,GTT 28×T***
10990919-C-A ***
10988755-C-A ***
56830045-C-CTCCAA ***
10969842-T-C ***
17500842-G-T 15388962-G-T ***
3923192-C-A 4055151-C-A ***
10885092-CTT-C,CAT ***
14992609-C-A 12880694-C-A ***
10860873-G-A ***
11024633-G-T ***
18568022-C-A 16456142-C-A ***
28460926-C-A 26314779-C-A ***
17115074-C-A 15003194-C-A ***
16930634-G-T 14818754-G-T ***
10942380-C-A ***
10756066-C-A ***
9733995-C-A 9896386-C-A IR3_Prx ***
11019441-T-A,C ***
11020932-C-A ***
10692280-G-A,C ***
7203951-AT-A 7335910-AT-A ***
10888623-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: IN361421031254982813678106099
Used in age calculations1031254982813678106099
Counts of SNPs2930
Variant counts last updated 2019-09-10 00:14:45.

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