Berry

BigY2: 168328
MDKA Birth: United States > Kentucky

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > ZZ77 > Z216 > S452 > ~19966372-C-T > FGC17334

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
168328
22363529-C-T 20201643-C-T DYZ19 A+
22234512-C-A 20072626-C-A DYZ19 A*
22291393-C-T 20129507-C-T DYZ19 A*
28817147-T-A 26671000-T-A A*
6281224-A-G 6413183-A-G IR3_Dst A*
18287593-A-G 16175713-A-G P6_Prx A*
19683439-G-C 17571559-G-C P5_Prx A*
19848662-T-C 17736782-T-C P5_Prx A*
25992879-T-C 23846732-T-C P1_Y1 A*
22461368-G-A 20299482-G-A BY155291 DYZ19 +
19751263-CA-C 17639383-CA-C P5_Prx 15×A+
6959946-G-A 7091905-G-A BY62530 YY+
7570234-G-A 7702193-G-A BY188878 YY+
7925664-C-T 8057623-C-T YY+
13835533-T-A 11714827-T-A BY189044 +
15279456-C-G 13167555-C-G BY189126 YY+
15562041-G-A 13450161-G-A YY+
15924192-G-A 13812312-G-A BY189165 YY+
17327660-A-C 15215780-A-C BY189229 YY+
17415167-T-C 15303287-T-C BY189236 YY+
18096285-GTA-G 15984405-GTA-G +
21075046-G-A 18913160-G-A BY189381 YY+
21541754-C-G 19379868-C-G BY189418 YY+
21541769-T-A 19379883-T-A BY189419 YY+
21609141-CA-C 19447255-CA-C +
21614929-T-C 19453043-T-C BY189424 YY+
22099501-T-C 19937615-T-C YY+
22440624-G-C 20278738-G-C BY218865 DYZ19 +
22470799-C-A 20308913-C-A BY189474 DYZ19 +
22475743-C-A 20313857-C-A BY223418 DYZ19 +
22728847-T-G 20566961-T-G BY140362 YY+
23412789-C-A 21250903-C-A BY189546 YY+
23587065-A-C 21425179-A-C BY189559 YY+
24411497-TAAAG-T 22265350-TAAAG-T +
24872524-G-A 22726377-G-A BY189596 IR1_R +
12764-T-C +
5976703-C-A 6108662-C-A BY28906 *
22294753-G-T 20132867-G-T Y24874 DYZ19 *
5976703-CTC-C,CTA 6108662-CTC-C,CTA *
22241337-G-T 20079451-G-T DYZ19 *
13470512-G-T 11314836-G-T *
19997550-C-T 17885670-C-T P5_Prx *
22317370-C-G 20155484-C-G DYZ19 *
13697896-T-A 11542220-T-A **
3374048-C-CATAAA 3506007-C-CATAAA 10×ATAAA**
58982291-G-T 56836144-G-T **
13488615-A-T 11332939-A-T **
7359743-AAT-A 7491702-AAT-A 11×AT**
22236203-C-T 20074317-C-T DYZ19 **
22529530-G-A 20367644-G-A **
58982238-C-A 56836091-C-A **
9030329-AAAAGG-A 9192720-AAAAGG-A 4×AAAGG**
22325183-C-T 20163297-C-T DYZ19 **
18949786-C-A 16837906-C-A **
13457699-T-G 11302023-T-G **
7414277-CAAA-C 7546236-CAAA-C 27×A**
7360599-C-A 7492558-C-A **
25841765-G-T 23695618-G-T P1_b3 **
13705474-A-T 11549798-A-T 10×GGAAT**
10755394-C-CTGT **
11021030-C-T **
13354858-TAA-T 11199182-TAA-T 14×A**
23034457-AT-A 20872571-AT-A **
10754951-C-CTAATA **
28532079-C-A 26385932-C-A **
13726084-G-T 11570408-G-T **
9631688-G-GGT 9794079-G-GGT IR3_Prx **
16309400-A-G 14197520-A-G **
13462019-G-C 11306343-G-C **
19482188-C-A 17370308-C-A **
56828929-C-CATGCTATTAG **
23034439-C-T 20872553-C-T **
58972965-T-G 56826818-T-G **
7579792-C-A 7711751-C-A **
13461962-C-T 11306286-C-T **
11643735-A-T **
11643737-T-C **
10989872-A-T **
10987763-C-G **
13472233-C-A 11316557-C-A **
5844980-C-A 5976939-C-A **
9310588-G-T 9472979-G-T **
19187608-G-A 17075728-G-A **
10754972-C-G **
13457693-T-A 11302017-T-A **
10840039-CTCCTA-C **
17283830-C-A 15171950-C-A **
10866822-C-A **
10829193-C-A **
27862643-G-T 25716496-G-T P1_Y2 **
10653469-A-C **
10763158-T-A **
14765041-C-A 12653110-C-A **
10795221-C-A **
10992732-C-A **
35472-C-A **
14701989-C-A 12590055-C-A **
13712268-G-A 11556592-G-A **
15158732-C-A 13046818-C-A **
17023420-C-A 14911540-C-A FTB82042 **
17028802-C-A 14916922-C-A **
13909198-G-A 11788492-G-A **
22950193-CTTTT-C 20788307-CTTTT-C 21×T**
28792969-A-G 26646822-A-G **
26421577-C-A 24275430-C-A P1_Y1 **
15495460-CAAAAA-C 13383580-CAAAAA-C 16×A**
9442199-C-A 9604590-C-A **
7894767-C-A 8026726-C-A **
10776507-C-T **
18443417-G-T 16331537-G-T P6_Dst **
19187548-C-T 17075668-C-T **
13453383-CGGGTTGATTC-G 11297707-CGGGTTGATTC-G **
13453400-T-C 11297724-T-C **
13453413-C-T 11297737-C-T **
9937660-C-A 10100051-C-A **
5874309-C-A 6006268-C-A **
10983011-G-T FT439134 **
11643715-A-T **
13472220-C-A 11316544-C-A **
22023224-G-T 19861338-G-T **
10657316-A-T **
4936882-C-A 5068841-C-A **
3271657-C-A 3403616-C-A **
7258582-C-A 7390541-C-A **
56830297-C-T **
8295567-C-A 8427526-C-A **
10892508-C-G **
23059593-A-ATT 20897707-A-ATT 12×T**
27864384-T-TCTC 25718237-T-TCTC P1_Y2 **
10840051-C-A **
7310514-T-C 7442473-T-C **
11020121-C-T **
13226613-C-A 11070937-C-A **
17492077-T-C 15380197-T-C **
17492079-A-G 15380199-A-G **
9996591-C-A 10158982-C-A **
17633226-C-A 15521346-C-A **
13865561-T-A 11744855-T-A **
16431229-CAAAAA-C 14319349-CAAAAA-C 15×A**
7053920-C-A 7185879-C-A **
7255440-A-C 7387399-A-C **
16462427-C-A 14350547-C-A **
56836096-C-T **
5785350-C-A 5917309-C-A **
10647944-T-G **
10931642-G-T **
28698736-C-A 26552589-C-A **
19053273-C-A 16941393-C-A **
56836048-G-T **
56836050-TGA-T **
15107518-G-A 12995605-G-A **
18707197-C-A 16595317-C-A **
10840063-A-T **
10999900-A-G **
13462053-C-T 11306377-C-T **
10861223-T-C **
24384908-G-T 22238761-G-T **
10011119-G-T 10173510-G-T **
5910476-C-A 6042435-C-A **
10756143-T-A **
18190574-C-A 16078694-C-A **
27822225-G-T 25676078-G-T P1_Y2 **
21558720-TC-T 19396834-TC-T **
2708716-C-T 2840675-C-T **
13472205-G-T 11316529-G-T **
3850122-T-G 3982081-T-G **
28804013-A-G 26657866-A-G **
14765036-T-G 12653105-T-G **
10927307-C-A **
16045485-C-A 13933605-C-A **
22619432-C-A 20457546-C-A **
21549183-GTTTT-G 19387297-GTTTT-G 17×T**
23426977-CA-C 21265091-CA-C **
18192506-C-A 16080626-C-A **
7183949-C-A 7315908-C-A **
4995631-C-A 5127590-C-A **
58976851-C-A 56830704-C-A **
6806808-C-A 6938767-C-A **
28804417-T-A 26658270-T-A **
19187612-G-A 17075732-G-A **
15361254-C-A 13249374-C-A **
19056362-G-A 16944482-G-A **
13222121-G-T 11066445-G-T **
14029343-C-A 11908637-C-A **
28812490-A-G 26666343-A-G **
15168826-C-A 13056912-C-A **
28803973-C-G 26657826-C-G **
3991966-ACACTCT-A 4123925-ACACTCT-A **
22510553-T-G 20348667-T-G DYZ19 **
5242905-C-A 5374864-C-A **
16309388-C-T 14197508-C-T **
21170319-GTTT-G 19008433-GTTT-G 14×T**
11673164-C-A FT399451 **
28544956-T-C 26398809-T-C **
2812832-C-A 2944791-C-A **
14993938-C-A 12882023-C-A **
56870021-C-A **
13453448-C-T 11297772-C-T **
5911525-C-A 6043484-C-A **
4070851-C-A 4202810-C-A **
22658509-C-A 20496623-C-A **
13726094-A-T 11570418-A-T **
19770058-C-A 17658178-C-A P5_Prx **
21691828-C-A 19529942-C-A **
21133371-C-A 18971485-C-A **
19187639-T-C 17075759-T-C **
18218887-C-A 16107007-C-A **
5059675-CCCA-C 5191634-CCCA-C **
10849954-C-A **
18247268-C-A 16135388-C-A **
20266136-G-GT 18104250-G-GT P5_Dst **
7311976-C-A 7443935-C-A **
13698498-C-A 11542822-C-A **
3389385-C-A 3521344-C-A **
9125632-G-T **
14218705-C-A 12097999-C-A **
13899073-T-C 11778367-T-C **
13838348-G-C 11717642-G-C **
16292752-A-G 14180872-A-G **
13462025-C-T 11306349-C-T **
13462028-G-A 11306352-G-A **
9440374-C-A 9602765-C-A **
15541712-A-C 13429832-A-C **
11643756-A-ACGAAT **
21961575-C-A 19799689-C-A **
10826878-C-G **
10763145-C-A **
22041545-C-A 19879659-C-A **
21836215-C-A 19674329-C-A **
10763043-T-G **
10785833-T-A **
7131968-C-A 7263927-C-A **
13454692-T-A 11299016-T-A **
10759786-A-G **
3229645-C-A 3361604-C-A **
11033693-C-T **
5910519-C-A 6042478-C-A **
13472248-C-G 11316572-C-G **
13817478-C-A 11696772-C-A **
10689019-A-T **
13461960-G-A 11306284-G-A **
10763164-T-A **
10689031-T-TGCAATCCACG **
56837549-T-A **
10657336-A-T **
28818469-A-T 26672322-A-T **
16292767-G-A 14180887-G-A **
13865558-T-A 11744852-T-A **
22092925-C-A 19931039-C-A **
22880889-C-A 20719003-C-A **
17492108-G-C 15380228-G-C **
17492127-C-G 15380247-C-G **
17492129-G-T 15380249-G-T **
18121805-C-A 16009925-C-A **
2708714-C-T 2840673-C-T FTB75297 **
3015699-C-A 3147658-C-A **
3436461-C-A 3568420-C-A **
3754484-T-C 3886443-T-C **
3990780-C-A 4122739-C-A **
4195537-C-CT 4327496-C-CT 10×T**
4672390-G-A 4804349-G-A **
4871677-C-A 5003636-C-A **
5125615-C-A 5257574-C-A **
5910802-C-A 6042761-C-A **
6133638-C-A 6265597-C-A **
6226060-T-TTTCTTTCC 6358019-T-TTTCTTTCC IR3_Dst **
6605768-C-A 6737727-C-A **
6734379-C-A 6866338-C-A **
6779556-T-C 6911515-T-C **
6891986-T-A 7023945-T-A **
6925894-C-A 7057853-C-A **
6957118-C-A 7089077-C-A **
7058229-G-A 7190188-G-A **
7128114-C-A 7260073-C-A **
7160678-A-G 7292637-A-G **
7281931-C-A 7413890-C-A **
7334791-C-A 7466750-C-A **
7424410-G-A 7556369-G-A **
7499302-T-C 7631261-T-C IR1_L **
7645355-G-A 7777314-G-A **
7709490-A-G 7841449-A-G **
8979746-T-C 9142137-T-C **
9026096-C-T 9188487-C-T **
9434439-A-G 9596830-A-G **
9636650-A-T 9799041-A-T IR3_Prx **
9765824-G-T 9928215-G-T **
9928205-C-T 10090596-C-T FT361739 **
9996211-A-C 10158602-A-C **
10024753-G-A 10187144-G-A BY83116 **
10653471-A-G **
10653478-A-T **
10756149-TCTCCC-T **
10760990-T-G **
10778514-C-A **
10804788-T-TCGACC **
10804807-TTC-T **
10826867-T-C **
10840004-TTCCAC-T **
10889230-T-C **
10943814-C-A **
10946832-C-A **
10983018-CTCGAG-C **
11021537-T-G **
11033696-C-A **
11033721-A-T **
11033721-AACTACACTCC-A **
11033925-C-T **
13242797-C-A 11087121-C-A **
13455532-T-C 11299856-T-C **
13469672-C-A 11313996-C-A **
13472215-A-T 11316539-A-T **
13472225-C-T 11316549-C-T **
13697863-G-A 11542187-G-A **
13710248-C-A 11554572-C-A **
13817551-C-A 11696845-C-A **
13836757-C-A 11716051-C-A **
13862666-A-G 11741960-A-G **
13909197-C-T 11788491-C-T FT377525 **
13936107-A-G 11815401-A-G **
14109484-A-G 11988778-A-G **
14421842-CT-C 12301117-CT-C **
14443142-G-T 12322415-G-T **
14446657-C-A 12325930-C-A **
14451176-C-A 12330449-C-A **
14607982-C-A 12496184-C-A **
14608253-C-A 12496455-C-A **
14634376-G-T 12522445-G-T **
14680559-G-T 12568625-G-T **
14753844-A-G 12641913-A-G **
14765020-T-A 12653089-T-A **
14765026-T-TC 12653095-T-TC **
14765030-G-C 12653099-G-C **
14765033-TC-T 12653102-TC-T **
14765055-G-C 12653124-G-C **
14951483-T-A 12839557-T-A **
15200043-A-T 13088129-A-T **
15239002-C-A 13127088-C-A **
15686764-G-A 13574884-G-A **
15744738-G-T 13632858-G-T **
15894498-T-C 13782618-T-C **
15995599-C-T 13883719-C-T **
16344548-C-T 14232668-C-T **
16427818-G-A 14315938-G-A **
16474712-C-A 14362832-C-A **
16700773-T-A 14588893-T-A **
16704090-G-T 14592210-G-T **
16705406-C-A 14593526-C-A **
17118395-C-A 15006515-C-A 16×T**
17222863-C-A 15110983-C-A **
17300777-G-A 15188897-G-A FT5671 **
17492099-G-A 15380219-G-A **
17492109-G-A 15380229-G-A **
17492136-G-T 15380256-G-T **
17851015-C-A 15739135-C-A **
18222014-A-T 16110134-A-T 12×T**
18639642-C-A 16527762-C-A **
18825737-C-A 16713857-C-A **
18926750-C-G 16814870-C-G **
19187587-CG-C 17075707-CG-C **
19187616-C-G 17075736-C-G **
19468689-T-C 17356809-T-C **
19532351-A-T 17420471-A-T **
19542196-T-G 17430316-T-G **
19751306-C-A 17639426-C-A P5_Prx **
20132217-G-A 18020337-G-A P5_Dst **
20363562-G-T 18201676-G-T P5_Dst **
20762270-G-T 18600384-G-T P4_Prx **
20762312-G-T 18600426-G-T P4_Prx **
21072150-C-A 18910264-C-A **
21340345-T-C 19178459-T-C **
21547379-T-A 19385493-T-A **
21809817-TA-T 19647931-TA-T **
21853711-A-AC 19691825-A-AC **
22200775-ATGCCT-A 20038889-ATGCCT-A **
22337563-T-C 20175677-T-C DYZ19 **
22366411-T-C 20204525-T-C DYZ19 **
22490288-G-T 20328402-G-T DYZ19 **
22529536-G-A 20367650-G-A **
22950084-G-A 20788198-G-A **
23034435-C-A 20872549-C-A **
23062185-G-T 20900299-G-T **
23256347-T-C 21094461-T-C **
23285288-A-C 21123402-A-C **
23306325-C-A 21144439-C-A **
23373199-C-T 21211313-C-T **
23386401-G-T 21224515-G-T **
23391782-C-A 21229896-C-A **
24404945-T-C 22258798-T-C **
24491668-C-T 22345521-C-T **
26421581-C-A 24275434-C-A P1_Y1 **
27607779-G-T 25461632-G-T P1_Y2 **
28479715-T-C 26333568-T-C **
28514667-G-A 26368520-G-A **
28589354-C-T 26443207-C-T **
28605430-A-T 26459283-A-T **
28812433-C-A 26666286-C-A **
28812492-G-A 26666345-G-A **
56750088-A-C **
56827041-T-C **
56834678-G-A **
56834682-C-A **
56837535-G-C **
56837541-G-A **
56837545-C-T **
56837581-C-A **
56858078-G-A **
24237-G-T **
18096891-AT-A 15985011-AT-A 11×T***
9131166-C-A 9293557-C-A ***
15242398-CT-C 13130484-CT-C 10×T***
7762187-CAA-C 7894146-CAA-C 13×A***
7636010-TAAA-T 7767969-TAAA-T 15×A***
56834577-C-A ***
10987865-A-C ***
19345128-TAAA-T 17233248-TAAA-T 18×A***
17580765-ATTT-A 15468885-ATTT-A 16×T***
13450411-CTCCATTCCATTCCATTCTATTCCATTCCAT-C,CTCCATTCCATTCCATTCCAT 11294735-CTCCATTCCATTCCATTCTATTCCATTCCAT-C,CTCCATTCCATTCCATTCCAT ***
10023885-ATC-A 10186276-ATC-A ***
11017845-C-A ***
21472157-C-A 19310271-C-A ***
15140636-C-A 13028723-C-A ***
10931624-T-C ***
23034497-A-G 20872611-A-G ***
19564177-C-A 17452297-C-A ***
13645236-T-C 11489560-T-C FGC31400 ***
13976277-C-A 11855571-C-A ***
13479016-G-A 11323340-G-A ***
4113208-C-T 4245167-C-T ***
7142135-C-A 7274094-C-A ***
7184271-C-A 7316230-C-A ***
9765642-G-T 9928033-G-T ***
14986627-T-C 12874695-T-C ***
17028652-C-A 14916772-C-A ***
17596764-C-A 15484884-C-A ***
18974341-A-G 16862461-A-G ***
19009605-C-A 16897725-C-A ***
21468745-ATTTT-A,ATT 19306859-ATTTT-A,ATT 25×T***
21836106-C-A 19674220-C-A ***
22320241-C-T 20158355-C-T DYZ19 ***
23034504-A-C 20872618-A-C ***
23609679-C-A 21447793-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.