Chagnon
BigY2: 37299MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 37299 |
---|---|---|---|---|---|---|---|
hg19:Y:20216091-C-T hg38:Y:18054205-C-T | P5_Dst | A+ | |||||
hg19:Y:20616338-C-T hg38:Y:18454452-C-T | BY246 | P4_Prx | A* | ||||
hg19:Y:17987634-T-A hg38:Y:15875754-T-A | P7_Prx | Y | A* | ||||
hg19:Y:18293317-T-G hg38:Y:16181437-T-G | P6_Prx | A* | |||||
hg19:Y:19587589-G-A hg38:Y:17475709-G-A | P5_Prx | Y | A* | ||||
hg19:Y:19669719-G-A hg38:Y:17557839-G-A | P5_Prx | A* | |||||
hg19:Y:19963686-G-A hg38:Y:17851806-G-A | P5_Prx | A* | |||||
hg19:Y:22305357-A-C hg38:Y:20143471-A-C | DYZ19 | A* | |||||
hg19:Y:23174232-G-C hg38:Y:21012346-G-C | Y | A* | |||||
hg19:Y:25891920-C-T hg38:Y:23745773-C-T | P1_Y1 | A* | |||||
hg19:Y:25956597-G-GT hg38:Y:23810450-G-GT | P1_Y1 | A* | |||||
hg19:Y:8041118-C-G hg38:Y:8173077-C-G | BY49881 | Y | Y | + | |||
hg19:Y:8866241-C-T hg38:Y:8998200-C-T | BY49902 | Y | + | ||||
hg19:Y:9931863-C-T hg38:Y:10094254-C-T | BY49920 | Y | + | ||||
hg19:Y:13669180-AGGAAT-A hg38:Y:11513504-AGGAAT-A | DYZ17 | 5×GGAAT | + | ||||
hg19:Y:15344248-AC-A hg38:Y:13232367-AC-A | + | ||||||
hg19:Y:15517937-C-T hg38:Y:13406057-C-T | BY102170 | Y | Y | + | |||
hg19:Y:16626167-C-A hg38:Y:14514287-C-A | BY49994 | Y | Y | + | |||
hg19:Y:17344834-A-T hg38:Y:15232954-A-T | BY50002 | Y | Y | + | |||
hg19:Y:17362194-A-G hg38:Y:15250314-A-G | BY114182 | Y | Y | + | |||
hg19:Y:17438683-T-A hg38:Y:15326803-T-A | BY114801 | Y | Y | + | |||
hg19:Y:17624232-C-A hg38:Y:15512352-C-A | BY116227 | Y | Y | + | |||
hg19:Y:17744926-A-G hg38:Y:15633046-A-G | BY50015 | Y | Y | + | |||
hg19:Y:17987024-C-T hg38:Y:15875144-C-T | BY50022 | P7_Prx | Y | + | |||
hg19:Y:18716214-C-T hg38:Y:16604334-C-T | BY123363 | Y | Y | + | |||
hg19:Y:19279794-G-A hg38:Y:17167914-G-A | BY50048 | Y | Y | + | |||
hg19:Y:21627431-G-A hg38:Y:19465545-G-A | BY134309 | Y | Y | + | |||
hg19:Y:21627898-G-A hg38:Y:19466012-G-A | BY134315 | Y | Y | + | |||
hg19:Y:21659778-G-A hg38:Y:19497892-G-A | BY50068 | Y | Y | + | |||
hg19:Y:22139049-A-T hg38:Y:19977163-A-T | BY50073 | Y | Y | + | |||
hg19:Y:22470149-T-C hg38:Y:20308263-T-C | BY36289 | DYZ19 | + | ||||
hg19:Y:22475651-T-G hg38:Y:20313765-T-G | BY50105 | DYZ19 | + | ||||
hg19:Y:22297995-T-A hg38:Y:20136109-T-A | BY177551 | DYZ19 | * | ||||
hg19:Y:13141809-C-T hg38:Y:10631295-C-T | ** | ||||||
hg19:Y:7143549-C-T hg38:Y:7275508-C-T | PF2848 CTS1010 | ** | |||||
hg19:Y:13362307-C-A hg38:Y:11206631-C-A | ** | ||||||
hg19:Y:13362318-C-T hg38:Y:11206642-C-T | ** | ||||||
hg19:Y:16928919-C-A hg38:Y:14817039-C-A | ZS913 | ** | |||||
hg19:Y:18388396-C-A hg38:Y:16276516-C-A | PF919 | P6_Gap | ** | ||||
hg19:Y:6869549-A-G hg38:Y:7001508-A-G | ** | ||||||
hg19:Y:13486589-C-T hg38:Y:11330913-C-T | ** | ||||||
hg19:Y:7162110-G-A hg38:Y:7294069-G-A | ** | ||||||
hg38:Y:10833381-C-A | ** | ||||||
hg19:Y:9602757-A-C hg38:Y:9765148-A-C | IR3_Prx | ** | |||||
hg19:Y:8020246-C-A hg38:Y:8152205-C-A | ** | ||||||
hg19:Y:19126402-C-A hg38:Y:17014522-C-A | ** | ||||||
hg38:Y:11030264-T-TG | ** | ||||||
hg38:Y:11030266-CA-C | ** | ||||||
hg38:Y:11031710-C-A | ** | ||||||
hg38:Y:11031725-C-A | ** | ||||||
hg38:Y:11027060-ATTCCT-A | ** | ||||||
hg19:Y:27886998-GCA-G hg38:Y:25740851-GCA-G | P1_Y2 | 9×CA | ** | ||||
hg19:Y:22729431-C-A hg38:Y:20567545-C-A | ** | ||||||
hg38:Y:11007535-T-C | ** | ||||||
hg38:Y:10873312-C-G | ** | ||||||
hg19:Y:7424053-C-A hg38:Y:7556012-C-A | ** | ||||||
hg38:Y:10971241-A-T | ** | ||||||
hg19:Y:19746889-GT-G hg38:Y:17635009-GT-G | P5_Prx | ** | |||||
hg19:Y:17657331-TA-T hg38:Y:15545451-TA-T | 10×A | ** | |||||
hg38:Y:10655148-C-T | ** | ||||||
hg38:Y:10655149-C-A | ** | ||||||
hg38:Y:10782883-CTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAT-C | ** | ||||||
hg19:Y:23633361-C-CT hg38:Y:21471475-C-CT | 9×T | ** | |||||
hg38:Y:10946581-T-TACAAC | ** | ||||||
hg38:Y:10755609-A-T | ** | ||||||
hg38:Y:10841028-A-T | ** | ||||||
hg19:Y:28772277-C-A hg38:Y:26626130-C-A | ** | ||||||
hg19:Y:16413680-C-A hg38:Y:14301800-C-A | ** | ||||||
hg38:Y:10771673-C-A | ** | ||||||
hg38:Y:10841041-C-T | ** | ||||||
hg19:Y:19477749-C-A hg38:Y:17365869-C-A | ** | ||||||
hg38:Y:10793676-A-T | ** | ||||||
hg19:Y:3728778-G-T hg38:Y:3860737-G-T | ** | ||||||
hg19:Y:6425663-C-A hg38:Y:6557622-C-A | ** | ||||||
hg19:Y:22489461-C-A hg38:Y:20327575-C-A | DYZ19 | ** | |||||
hg19:Y:8974230-G-T hg38:Y:9136621-G-T | ** | ||||||
hg19:Y:16514538-C-A hg38:Y:14402658-C-A | ** | ||||||
hg19:Y:13975989-C-A hg38:Y:11855283-C-A | FT304233 | ** | |||||
hg19:Y:13215958-C-A hg38:Y:11060282-C-A | ** | ||||||
hg19:Y:7143961-C-A hg38:Y:7275920-C-A | ** | ||||||
hg19:Y:22295634-C-A hg38:Y:20133748-C-A | DYZ19 | ** | |||||
hg19:Y:4293515-G-T hg38:Y:4425474-G-T | ** | ||||||
hg19:Y:14970245-C-A hg38:Y:12858320-C-A | ** | ||||||
hg38:Y:10959023-T-A | ** | ||||||
hg19:Y:8341758-C-A hg38:Y:8473717-C-A | ** | ||||||
hg38:Y:11007519-A-T | ** | ||||||
hg38:Y:11007530-T-C | ** | ||||||
hg19:Y:20094661-GT-G hg38:Y:17982781-GT-G | P5_Dst | ** | |||||
hg19:Y:14985092-C-A hg38:Y:12873160-C-A | ** | ||||||
hg19:Y:9522631-C-A hg38:Y:9685022-C-A | ** | ||||||
hg38:Y:10932975-C-A | ** | ||||||
hg38:Y:10691515-C-A | ** | ||||||
hg38:Y:11648069-A-T | FT450036 | DYZ17 | ** | ||||
hg19:Y:8264477-C-A hg38:Y:8396436-C-A | ** | ||||||
hg19:Y:15325211-C-A hg38:Y:13213329-C-A | ** | ||||||
hg38:Y:10755644-C-T | ** | ||||||
hg19:Y:22159367-C-A hg38:Y:19997481-C-A | ** | ||||||
hg19:Y:14588894-C-A hg38:Y:12477094-C-A | ** | ||||||
hg38:Y:10667953-C-A | ** | ||||||
hg38:Y:11007212-C-A | ** | ||||||
hg38:Y:11649578-C-A | DYZ17 | ** | |||||
hg38:Y:56876194-C-A | ** | ||||||
hg38:Y:10932967-C-A | ** | ||||||
hg38:Y:10932972-C-T | ** | ||||||
hg38:Y:10932978-T-C | ** | ||||||
hg19:Y:14589830-C-A hg38:Y:12478030-C-A | ** | ||||||
hg19:Y:14385579-G-T hg38:Y:12264875-G-T | ** | ||||||
hg19:Y:5842430-C-A hg38:Y:5974389-C-A | ** | ||||||
hg19:Y:17159008-G-A hg38:Y:15047128-G-A | Y98346 | ** | |||||
hg19:Y:23552728-TAC-T hg38:Y:21390842-TAC-T | ** | ||||||
hg19:Y:16286514-C-A hg38:Y:14174634-C-A | ** | ||||||
hg19:Y:17033674-C-A hg38:Y:14921794-C-A | ** | ||||||
hg19:Y:7374275-G-T hg38:Y:7506234-G-T | ** | ||||||
hg19:Y:14658160-C-T hg38:Y:12546225-C-T | ** | ||||||
hg19:Y:9519786-C-A hg38:Y:9682177-C-A | ** | ||||||
hg19:Y:18716042-C-A hg38:Y:16604162-C-A | ** | ||||||
hg19:Y:13290090-C-A hg38:Y:11134414-C-A | ** | ||||||
hg38:Y:11007542-C-T | ** | ||||||
hg19:Y:14880485-C-A hg38:Y:12768555-C-A | ** | ||||||
hg38:Y:10874182-G-T | ** | ||||||
hg19:Y:7656796-C-A hg38:Y:7788755-C-A | ** | ||||||
hg19:Y:18088255-C-A hg38:Y:15976375-C-A | FT181337 | ** | |||||
hg19:Y:19275146-C-A hg38:Y:17163266-C-A | ** | ||||||
hg19:Y:14184348-C-A hg38:Y:12063642-C-A | ** | ||||||
hg19:Y:24244660-G-T hg38:Y:22098513-G-T | P3_b1 | ** | |||||
hg19:Y:14519697-C-A hg38:Y:12407898-C-A | ** | ||||||
hg19:Y:14453709-G-T hg38:Y:12332982-G-T | 18×A | ** | |||||
hg38:Y:10976157-T-C | ** | ||||||
hg19:Y:9602650-T-G hg38:Y:9765041-T-G | IR3_Prx | ** | |||||
hg19:Y:15474915-C-T hg38:Y:13363035-C-T | ** | ||||||
hg19:Y:14189437-C-A hg38:Y:12068731-C-A | ** | ||||||
hg19:Y:17597506-GA-G hg38:Y:15485626-GA-G | 10×A | ** | |||||
hg19:Y:3286831-C-A hg38:Y:3418790-C-A | ** | ||||||
hg38:Y:10631260-C-A | ** | ||||||
hg19:Y:7428234-A-C hg38:Y:7560193-A-C | ** | ||||||
hg19:Y:14412882-C-A hg38:Y:12292179-C-A | ** | ||||||
hg19:Y:6832074-C-A hg38:Y:6964033-C-A | ** | ||||||
hg38:Y:10990505-C-A | ** | ||||||
hg19:Y:14216414-C-A hg38:Y:12095708-C-A | ** | ||||||
hg38:Y:11648065-T-G | FT450035 | DYZ17 | ** | ||||
hg19:Y:2665355-G-A hg38:Y:2797314-G-A | ** | ||||||
hg19:Y:2666609-C-G hg38:Y:2798568-C-G | ** | ||||||
hg19:Y:2666613-C-T hg38:Y:2798572-C-T | ** | ||||||
hg19:Y:2708192-G-T hg38:Y:2840151-G-T | ** | ||||||
hg19:Y:3258893-C-A hg38:Y:3390852-C-A | ** | ||||||
hg19:Y:3301258-TACAC-T hg38:Y:3433217-TACAC-T | 15×AC | ** | |||||
hg19:Y:3942860-G-T hg38:Y:4074819-G-T | ** | ||||||
hg19:Y:4150448-C-A hg38:Y:4282407-C-A | ** | ||||||
hg19:Y:4471535-C-A hg38:Y:4603494-C-A | ** | ||||||
hg19:Y:4935965-A-G hg38:Y:5067924-A-G | ** | ||||||
hg19:Y:5180187-G-A hg38:Y:5312146-G-A | ** | ||||||
hg19:Y:5207272-C-A hg38:Y:5339231-C-A | ** | ||||||
hg19:Y:5249284-T-A hg38:Y:5381243-T-A | ** | ||||||
hg19:Y:5249615-C-A hg38:Y:5381574-C-A | ** | ||||||
hg19:Y:5362657-C-A hg38:Y:5494616-C-A | ** | ||||||
hg19:Y:5459629-C-A hg38:Y:5591588-C-A | ** | ||||||
hg19:Y:5785734-G-T hg38:Y:5917693-G-T | ** | ||||||
hg19:Y:5861213-T-G hg38:Y:5993172-T-G | ** | ||||||
hg19:Y:5956898-A-C hg38:Y:6088857-A-C | ** | ||||||
hg19:Y:6274210-T-A hg38:Y:6406169-T-A | IR3_Dst | ** | |||||
hg19:Y:6274248-T-A hg38:Y:6406207-T-A | IR3_Dst | ** | |||||
hg19:Y:6478995-C-A hg38:Y:6610954-C-A | ** | ||||||
hg19:Y:6651769-C-A hg38:Y:6783728-C-A | ** | ||||||
hg19:Y:6919924-C-A hg38:Y:7051883-C-A | ** | ||||||
hg19:Y:7080246-C-A hg38:Y:7212205-C-A | ** | ||||||
hg19:Y:7145628-A-C hg38:Y:7277587-A-C | ** | ||||||
hg19:Y:7162111-G-T hg38:Y:7294070-G-T | ** | ||||||
hg19:Y:7162117-T-C hg38:Y:7294076-T-C | ** | ||||||
hg19:Y:7201629-C-A hg38:Y:7333588-C-A | ** | ||||||
hg19:Y:7216702-C-T hg38:Y:7348661-C-T | ** | ||||||
hg19:Y:7386748-C-A hg38:Y:7518707-C-A | ** | ||||||
hg19:Y:7608476-T-G hg38:Y:7740435-T-G | ** | ||||||
hg19:Y:7781006-C-A hg38:Y:7912965-C-A | ** | ||||||
hg19:Y:8268945-C-A hg38:Y:8400904-C-A | ** | ||||||
hg19:Y:8649466-G-T hg38:Y:8781425-G-T | ** | ||||||
hg38:Y:9126730-A-C | ** | ||||||
hg19:Y:9007864-A-C hg38:Y:9170255-A-C | ** | ||||||
hg19:Y:9117243-G-T hg38:Y:9279634-G-T | ** | ||||||
hg19:Y:9602716-T-A hg38:Y:9765107-T-A | IR3_Prx | ** | |||||
hg19:Y:9764301-G-GAA hg38:Y:9926692-G-GAA | 12×A | ** | |||||
hg19:Y:9852914-AAAGGAAGGAAGGAAGGAAGGAAGGAAGG-A hg38:Y:10015305-AAAGGAAGGAAGGAAGGAAGGAAGGAAGG-A | 17×AAGG | ** | |||||
hg19:Y:9973214-G-A hg38:Y:10135605-G-A | ** | ||||||
hg38:Y:10626461-A-T | ** | ||||||
hg38:Y:10631229-C-A | ** | ||||||
hg38:Y:10631284-C-T | ** | ||||||
hg38:Y:10645904-T-TCCACTCCTCTTGATG | ** | ||||||
hg38:Y:10651697-T-C | ** | ||||||
hg38:Y:10653111-TC-T | ** | ||||||
hg38:Y:10667492-C-A | ** | ||||||
hg38:Y:10755671-C-T | ** | ||||||
hg38:Y:10777045-CTCTAT-C | ** | ||||||
hg38:Y:10777860-C-A | ** | ||||||
hg38:Y:10797002-C-A | ** | ||||||
hg38:Y:10809303-C-A | ** | ||||||
hg38:Y:10809346-TCC-T | ** | ||||||
hg38:Y:10839896-C-G | ** | ||||||
hg38:Y:10852110-T-C | ** | ||||||
hg38:Y:10865388-A-T | ** | ||||||
hg38:Y:10902648-G-T | ** | ||||||
hg38:Y:10906869-AG-A | ** | ||||||
hg38:Y:10921651-T-G | ** | ||||||
hg38:Y:10962600-C-AA | ** | ||||||
hg38:Y:10968157-C-A | ** | ||||||
hg38:Y:10969141-C-A | ** | ||||||
hg38:Y:10969341-G-T | ** | ||||||
hg38:Y:10994796-C-A | ** | ||||||
hg38:Y:11007499-AC-A | ** | ||||||
hg38:Y:11007504-T-TATCACA | ** | ||||||
hg38:Y:11014802-G-T | ** | ||||||
hg38:Y:11028015-C-A | ** | ||||||
hg19:Y:13199337-C-A hg38:Y:11043661-C-A | ** | ||||||
hg19:Y:13234597-T-G hg38:Y:11078921-T-G | ** | ||||||
hg19:Y:13262979-T-G hg38:Y:11107303-T-G | ** | ||||||
hg19:Y:13294658-A-C hg38:Y:11138982-A-C | ** | ||||||
hg19:Y:13294672-T-G hg38:Y:11138996-T-G | ** | ||||||
hg19:Y:13514892-T-G hg38:Y:11359216-T-G | ** | ||||||
hg19:Y:13582626-A-C hg38:Y:11426950-A-C | ** | ||||||
hg19:Y:13644059-T-A hg38:Y:11488383-T-A | ** | ||||||
hg19:Y:14037999-T-G hg38:Y:11917293-T-G | ** | ||||||
hg19:Y:14102531-G-C hg38:Y:11981825-G-C | ** | ||||||
hg19:Y:14217946-C-G hg38:Y:12097240-C-G | ** | ||||||
hg19:Y:14324942-C-A hg38:Y:12204236-C-A | ** | ||||||
hg19:Y:14342504-A-G hg38:Y:12221799-A-G | ** | ||||||
hg19:Y:14369758-G-T hg38:Y:12249054-G-T | ** | ||||||
hg19:Y:14372884-C-CA hg38:Y:12252180-C-CA | 9×A | ** | |||||
hg19:Y:14386577-G-A hg38:Y:12265873-G-A | FT138414 | ** | |||||
hg19:Y:14452343-G-T hg38:Y:12331616-G-T | ** | ||||||
hg19:Y:14483822-C-T hg38:Y:12363091-C-T | BY176762 | ** | |||||
hg19:Y:14483829-T-G hg38:Y:12363098-T-G | BY176764 | ** | |||||
hg19:Y:14483834-C-T hg38:Y:12363103-C-T | BY176765 | ** | |||||
hg19:Y:14485554-C-A hg38:Y:12364823-C-A | ** | ||||||
hg19:Y:14741584-A-C hg38:Y:12629652-A-C | ** | ||||||
hg19:Y:14866240-T-C hg38:Y:12754310-T-C | ** | ||||||
hg19:Y:14938392-C-A hg38:Y:12826467-C-A | ** | ||||||
hg19:Y:14962295-T-C hg38:Y:12850370-T-C | ** | ||||||
hg19:Y:14966503-T-TA hg38:Y:12854578-T-TA | ** | ||||||
hg19:Y:14994346-C-T hg38:Y:12882431-C-T | ** | ||||||
hg19:Y:15051340-C-A hg38:Y:12939431-C-A | ** | ||||||
hg19:Y:15051349-T-G hg38:Y:12939440-T-G | ** | ||||||
hg19:Y:15051352-A-T hg38:Y:12939443-A-T | ** | ||||||
hg19:Y:15276859-A-C hg38:Y:13164948-A-C | ** | ||||||
hg19:Y:15340541-T-G hg38:Y:13228660-T-G | ** | ||||||
hg19:Y:15366124-G-T hg38:Y:13254244-G-T | ** | ||||||
hg19:Y:15449892-C-CTTT hg38:Y:13338012-C-CTTT | 21×T | ** | |||||
hg19:Y:15468663-G-T hg38:Y:13356783-G-T | ** | ||||||
hg19:Y:15722712-T-G hg38:Y:13610832-T-G | ** | ||||||
hg19:Y:15964804-G-T hg38:Y:13852924-G-T | ** | ||||||
hg19:Y:16046166-A-G hg38:Y:13934286-A-G | BY176884 | ** | |||||
hg19:Y:16096470-A-G hg38:Y:13984590-A-G | P8_Prx | ** | |||||
hg19:Y:16370901-T-G hg38:Y:14259021-T-G | ** | ||||||
hg19:Y:16435857-C-A hg38:Y:14323977-C-A | ** | ||||||
hg19:Y:16442056-T-G hg38:Y:14330176-T-G | ** | ||||||
hg19:Y:16745396-T-C hg38:Y:14633516-T-C | ** | ||||||
hg19:Y:16745396-T-TG hg38:Y:14633516-T-TG | ** | ||||||
hg19:Y:16747641-T-TG hg38:Y:14635761-T-TG | ** | ||||||
hg19:Y:16863762-A-T hg38:Y:14751882-A-T | ** | ||||||
hg19:Y:16863766-C-T hg38:Y:14751886-C-T | ** | ||||||
hg19:Y:16866123-T-C hg38:Y:14754243-T-C | ** | ||||||
hg19:Y:16880817-G-T hg38:Y:14768937-G-T | ** | ||||||
hg19:Y:16886728-C-A hg38:Y:14774848-C-A | ** | ||||||
hg19:Y:16922585-GT-G hg38:Y:14810705-GT-G | 8×T | ** | |||||
hg19:Y:16932125-T-G hg38:Y:14820245-T-G | ** | ||||||
hg19:Y:17315490-T-A hg38:Y:15203610-T-A | ** | ||||||
hg19:Y:17320593-C-A hg38:Y:15208713-C-A | ** | ||||||
hg19:Y:17382052-A-T hg38:Y:15270172-A-T | ** | ||||||
hg19:Y:17452750-C-A hg38:Y:15340870-C-A | ** | ||||||
hg19:Y:17459526-C-A hg38:Y:15347646-C-A | ** | ||||||
hg19:Y:17737966-A-C hg38:Y:15626086-A-C | ** | ||||||
hg19:Y:17760385-C-A hg38:Y:15648505-C-A | ** | ||||||
hg19:Y:17961029-A-C hg38:Y:15849149-A-C | ** | ||||||
hg19:Y:18021316-T-C hg38:Y:15909436-T-C | ** | ||||||
hg19:Y:18600129-C-A hg38:Y:16488249-C-A | ** | ||||||
hg19:Y:18604969-C-A hg38:Y:16493089-C-A | ** | ||||||
hg19:Y:18631955-C-A hg38:Y:16520075-C-A | ** | ||||||
hg19:Y:18648681-C-A hg38:Y:16536801-C-A | ** | ||||||
hg19:Y:18688447-G-A hg38:Y:16576567-G-A | ** | ||||||
hg19:Y:18769481-GT-G hg38:Y:16657601-GT-G | ** | ||||||
hg19:Y:18892922-C-A hg38:Y:16781042-C-A | ** | ||||||
hg19:Y:19014009-G-T hg38:Y:16902129-G-T | ** | ||||||
hg19:Y:19078423-G-A hg38:Y:16966543-G-A | FT170283 | ** | |||||
hg19:Y:19247211-C-A hg38:Y:17135331-C-A | ** | ||||||
hg19:Y:19467001-G-A hg38:Y:17355121-G-A | FT140246 | ** | |||||
hg19:Y:19467060-T-G hg38:Y:17355180-T-G | ** | ||||||
hg19:Y:19516001-GA-G hg38:Y:17404121-GA-G | 9×A | ** | |||||
hg19:Y:19721248-T-G hg38:Y:17609368-T-G | P5_Prx | ** | |||||
hg19:Y:19721263-G-A hg38:Y:17609383-G-A | P5_Prx | ** | |||||
hg19:Y:19901170-A-C hg38:Y:17789290-A-C | P5_Prx | ** | |||||
hg19:Y:20479068-G-T hg38:Y:18317182-G-T | P5_Dst | ** | |||||
hg19:Y:20987262-T-G hg38:Y:18825376-T-G | P4_Dst | ** | |||||
hg19:Y:21082123-C-A hg38:Y:18920237-C-A | ** | ||||||
hg19:Y:21135199-T-G hg38:Y:18973313-T-G | ** | ||||||
hg19:Y:21144026-A-G hg38:Y:18982140-A-G | ** | ||||||
hg19:Y:21522735-A-AG hg38:Y:19360849-A-AG | ** | ||||||
hg19:Y:21563186-C-A hg38:Y:19401300-C-A | ** | ||||||
hg19:Y:21604017-A-C hg38:Y:19442131-A-C | ** | ||||||
hg19:Y:21625329-C-A hg38:Y:19463443-C-A | ** | ||||||
hg19:Y:21714654-C-T hg38:Y:19552768-C-T | ** | ||||||
hg19:Y:21714659-G-A hg38:Y:19552773-G-A | ** | ||||||
hg19:Y:21714660-A-G hg38:Y:19552774-A-G | ** | ||||||
hg19:Y:21769894-C-A hg38:Y:19608008-C-A | ** | ||||||
hg19:Y:22023410-T-A hg38:Y:19861524-T-A | ** | ||||||
hg19:Y:22089821-C-A hg38:Y:19927935-C-A | ** | ||||||
hg19:Y:22176742-A-C hg38:Y:20014856-A-C | ** | ||||||
hg19:Y:22429823-T-G hg38:Y:20267937-T-G | DYZ19 | ** | |||||
hg19:Y:22511362-A-C hg38:Y:20349476-A-C | DYZ19 | ** | |||||
hg19:Y:22646528-T-G hg38:Y:20484642-T-G | ** | ||||||
hg19:Y:22743406-T-C hg38:Y:20581520-T-C | ** | ||||||
hg19:Y:22749359-A-C hg38:Y:20587473-A-C | ** | ||||||
hg19:Y:22774713-C-A hg38:Y:20612827-C-A | FTB49572 | ** | |||||
hg19:Y:22776425-C-A hg38:Y:20614539-C-A | ** | ||||||
hg19:Y:22851201-C-T hg38:Y:20689315-C-T | ** | ||||||
hg19:Y:22851308-C-A hg38:Y:20689422-C-A | ** | ||||||
hg19:Y:23005311-C-A hg38:Y:20843425-C-A | ** | ||||||
hg19:Y:23005353-G-A hg38:Y:20843467-G-A | ** | ||||||
hg19:Y:23536969-A-G hg38:Y:21375083-A-G | BY177447 | ** | |||||
hg19:Y:23561644-AC-A hg38:Y:21399758-AC-A | ** | ||||||
hg19:Y:23572778-C-A hg38:Y:21410892-C-A | ** | ||||||
hg19:Y:23623235-G-A hg38:Y:21461349-G-A | ** | ||||||
hg19:Y:23655407-T-C hg38:Y:21493521-T-C | ** | ||||||
hg19:Y:24344976-G-T hg38:Y:22198829-G-T | P3_t1 | ** | |||||
hg19:Y:24344985-G-T hg38:Y:22198838-G-T | P3_t1 | ** | |||||
hg19:Y:24345028-G-T hg38:Y:22198881-G-T | P3_t1 | ** | |||||
hg19:Y:24480035-AAAT-A hg38:Y:22333888-AAAT-A | ** | ||||||
hg19:Y:25507684-T-A hg38:Y:23361537-T-A | P1_gr1 | ** | |||||
hg19:Y:26060163-C-A hg38:Y:23914016-C-A | P1_Y1 | ** | |||||
hg19:Y:27777782-T-G hg38:Y:25631635-T-G | P1_Y2 | ** | |||||
hg19:Y:27777815-A-T hg38:Y:25631668-A-T | P1_Y2 | ** | |||||
hg19:Y:28581161-G-T hg38:Y:26435014-G-T | ** | ||||||
hg19:Y:28581179-T-G hg38:Y:26435032-T-G | ** | ||||||
hg19:Y:28590956-A-G hg38:Y:26444809-A-G | BY177501 | ** | |||||
hg38:Y:56728420-A-T | ** | ||||||
hg19:Y:58972938-C-G hg38:Y:56826791-C-G | *** | ||||||
hg19:Y:19218453-C-A hg38:Y:17106573-C-A | Z13801 | *** | |||||
hg19:Y:13461108-A-T hg38:Y:11305432-A-T | *** | ||||||
hg19:Y:13453363-C-T hg38:Y:11297687-C-T | *** | ||||||
hg19:Y:18401930-C-A hg38:Y:16290050-C-A | P6_Gap | *** | |||||
hg19:Y:18644311-TA-T hg38:Y:16532431-TA-T | 9×A | *** | |||||
hg38:Y:11025142-C-A | *** | ||||||
hg38:Y:10971239-C-A | *** | ||||||
hg38:Y:10971254-C-A | *** | ||||||
hg38:Y:10971255-C-CGGATG | *** | ||||||
hg19:Y:8751697-C-A hg38:Y:8883656-C-A | *** | ||||||
hg38:Y:10823794-C-A | *** | ||||||
hg19:Y:3131062-C-A hg38:Y:3263021-C-A | *** | ||||||
hg19:Y:23515162-A-ATT hg38:Y:21353276-A-ATT | 14×T | *** | |||||
hg38:Y:10666883-C-A | *** | ||||||
hg19:Y:22297932-G-A,T hg38:Y:20136046-G-A,T | DYZ19 | *** | |||||
hg38:Y:10888658-C-T | *** | ||||||
hg38:Y:10888698-C-T | *** | ||||||
hg19:Y:13453370-A-C hg38:Y:11297694-A-C | *** | ||||||
hg38:Y:10965591-T-C | *** | ||||||
hg19:Y:17673156-GA-G hg38:Y:15561276-GA-G | *** | ||||||
hg38:Y:10787379-C-A | *** | ||||||
hg19:Y:13843992-A-T hg38:Y:11723286-A-T | DYZ17 | *** | |||||
hg19:Y:3436171-CTT-C,CT hg38:Y:3568130-CTT-C,CT | 15×T | *** | |||||
hg38:Y:56826806-C-G | *** | ||||||
hg38:Y:11038010-C-A | *** | ||||||
hg19:Y:15658794-C-A hg38:Y:13546914-C-A | *** | ||||||
hg19:Y:13457417-C-G hg38:Y:11301741-C-G | *** | ||||||
hg19:Y:21890760-C-A hg38:Y:19728874-C-A | *** | ||||||
hg19:Y:28673500-C-A hg38:Y:26527353-C-A | *** | ||||||
hg19:Y:22127491-C-A hg38:Y:19965605-C-A | *** | ||||||
hg19:Y:21700001-C-A hg38:Y:19538115-C-A | *** | ||||||
hg19:Y:19260399-C-A hg38:Y:17148519-C-A | *** | ||||||
hg19:Y:14718799-C-A hg38:Y:12606867-C-A | *** | ||||||
hg38:Y:10670988-TTCTTTTCCAC-T,TTCTTTTCCAA | *** | ||||||
hg19:Y:8398537-TAAA-T hg38:Y:8530496-TAAA-T | 13×A | *** | |||||
hg19:Y:17919847-G-T hg38:Y:15807967-G-T | *** | ||||||
hg19:Y:13463573-C-A hg38:Y:11307897-C-A | *** | ||||||
hg19:Y:17475927-C-A hg38:Y:15364047-C-A | *** | ||||||
hg19:Y:15616484-C-A hg38:Y:13504604-C-A | *** | ||||||
hg19:Y:16829471-C-A hg38:Y:14717591-C-A | *** | ||||||
hg19:Y:6816032-C-A hg38:Y:6947991-C-A | *** | ||||||
hg19:Y:7333542-C-A hg38:Y:7465501-C-A | *** | ||||||
hg19:Y:7670631-C-A hg38:Y:7802590-C-A | *** | ||||||
hg19:Y:7732227-C-CT hg38:Y:7864186-C-CT | 9×T | *** | |||||
hg19:Y:7858731-C-A hg38:Y:7990690-C-A | *** | ||||||
hg19:Y:8179904-G-T hg38:Y:8311863-G-T | *** | ||||||
hg19:Y:8535370-CA-C,CAA hg38:Y:8667329-CA-C,CAA | 11×A | *** | |||||
hg19:Y:9369438-C-A hg38:Y:9531829-C-A | *** | ||||||
hg19:Y:9895712-T-A hg38:Y:10058103-T-A | *** | ||||||
hg19:Y:9900594-G-T hg38:Y:10062985-G-T | *** | ||||||
hg19:Y:9936383-T-C hg38:Y:10098774-T-C | *** | ||||||
hg19:Y:9952258-C-A hg38:Y:10114649-C-A | *** | ||||||
hg38:Y:10804779-C-A,CCTTTA | *** | ||||||
hg38:Y:10845707-C-G,T | *** | ||||||
hg38:Y:10888677-C-CCATTA | *** | ||||||
hg38:Y:10952529-C-A | *** | ||||||
hg38:Y:10978816-T-C | *** | ||||||
hg19:Y:13197187-A-G hg38:Y:11041511-A-G | *** | ||||||
hg19:Y:13453160-A-G hg38:Y:11297484-A-G | *** | ||||||
hg38:Y:11666446-TGGAATGG-T | DYZ17 | *** | |||||
hg19:Y:14356890-CT-C,CTTT hg38:Y:12236185-CT-C,CTTT | 17×T | *** | |||||
hg19:Y:14420077-C-A hg38:Y:12299352-C-A | *** | ||||||
hg19:Y:14471559-C-A hg38:Y:12350828-C-A | *** | ||||||
hg19:Y:14577421-C-A hg38:Y:12465621-C-A | *** | ||||||
hg19:Y:14727426-C-A hg38:Y:12615494-C-A | *** | ||||||
hg19:Y:14810090-C-A hg38:Y:12698161-C-A | *** | ||||||
hg19:Y:15237990-C-A hg38:Y:13126076-C-A | *** | ||||||
hg19:Y:15331657-C-A hg38:Y:13219775-C-A | *** | ||||||
hg19:Y:15379668-G-A hg38:Y:13267788-G-A | *** | ||||||
hg19:Y:15744320-C-A hg38:Y:13632440-C-A | *** | ||||||
hg19:Y:16219361-C-A hg38:Y:14107481-C-A | *** | ||||||
hg19:Y:17367889-G-T hg38:Y:15256009-G-T | *** | ||||||
hg19:Y:17637190-C-A hg38:Y:15525310-C-A | *** | ||||||
hg19:Y:17976729-C-A hg38:Y:15864849-C-A | *** | ||||||
hg19:Y:18025349-C-A hg38:Y:15913469-C-A | *** | ||||||
hg19:Y:18106289-G-A hg38:Y:15994409-G-A | *** | ||||||
hg19:Y:18244042-C-A hg38:Y:16132162-C-A | *** | ||||||
hg19:Y:18385064-C-A hg38:Y:16273184-C-A | P6_Gap | *** | |||||
hg19:Y:18655571-G-T hg38:Y:16543691-G-T | *** | ||||||
hg19:Y:18806034-C-CTCTT hg38:Y:16694154-C-CTCTT | *** | ||||||
hg19:Y:18808099-T-C hg38:Y:16696219-T-C | *** | ||||||
hg19:Y:18903687-C-A hg38:Y:16791807-C-A | *** | ||||||
hg19:Y:18916530-GAAA-G,GAAAA hg38:Y:16804650-GAAA-G,GAAAA | 12×A | *** | |||||
hg19:Y:19067329-C-A hg38:Y:16955449-C-A | *** | ||||||
hg19:Y:19149498-A-G hg38:Y:17037618-A-G | *** | ||||||
hg19:Y:19294802-T-C hg38:Y:17182922-T-C | *** | ||||||
hg19:Y:19345480-C-A hg38:Y:17233600-C-A | *** | ||||||
hg19:Y:21073532-TA-T hg38:Y:18911646-TA-T | 8×A | *** | |||||
hg19:Y:21193442-A-G hg38:Y:19031556-A-G | *** | ||||||
hg19:Y:21436739-C-A hg38:Y:19274853-C-A | *** | ||||||
hg19:Y:21845800-C-A hg38:Y:19683914-C-A | *** | ||||||
hg19:Y:21902786-C-T hg38:Y:19740900-C-T | BY180823 | *** | |||||
hg19:Y:21976376-G-A hg38:Y:19814490-G-A | *** | ||||||
hg19:Y:22071493-C-A hg38:Y:19909607-C-A | *** | ||||||
hg19:Y:22575334-C-A hg38:Y:20413448-C-A | *** | ||||||
hg19:Y:22581184-C-A hg38:Y:20419298-C-A | *** | ||||||
hg19:Y:22687223-C-A hg38:Y:20525337-C-A | *** | ||||||
hg19:Y:22747730-TTA-T,TTTA hg38:Y:20585844-TTA-T,TTTA | *** | ||||||
hg19:Y:22868285-TAAAAA-T,TAAAA hg38:Y:20706399-TAAAAA-T,TAAAA | 27×A | *** | |||||
hg19:Y:23155636-C-A hg38:Y:20993750-C-A | *** | ||||||
hg19:Y:23256172-C-A hg38:Y:21094286-C-A | *** | ||||||
hg19:Y:23351118-TTTTG-T hg38:Y:21189232-TTTTG-T | 4×TTTG | *** | |||||
hg19:Y:23397282-G-A hg38:Y:21235396-G-A | *** | ||||||
hg19:Y:23440846-T-C hg38:Y:21278960-T-C | *** | ||||||
hg19:Y:24109164-C-T hg38:Y:21963017-C-T | P3_b1 | *** | |||||
hg19:Y:26179678-G-T hg38:Y:24033531-G-T | P1_Y1 | *** | |||||
hg19:Y:27618117-T-C hg38:Y:25471970-T-C | P1_Y2 | *** | |||||
hg19:Y:28531607-GCAAAA-G hg38:Y:26385460-GCAAAA-G | 4×CAAAA | *** | |||||
hg19:Y:28687533-C-A hg38:Y:26541386-C-A | *** | ||||||
hg38:Y:56828258-CCATTCCATGT-C,CCATTC | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 37299 | 8561359 | 6956754 | 6909664 |
Used in age calculations | 8561359 | 6956754 | 6909664 |
Counts of SNPs | 19 | 15 |
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