Smith
BigY2: 573885Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 573885 |
---|---|---|---|---|---|---|---|---|
11653786-CGAATGGAATG-C | DYZ17 | + | ||||||
7356103-C-T | 7488062-C-T | BY189843 | Y | Y | + | |||
7782714-T-G | 7914673-T-G | BY189944 | Y | Y | + | |||
7830325-A-G | 7962284-A-G | BY189959 | Y | Y | + | |||
9967814-A-G | 10130205-A-G | BY209435 | Y | + | ||||
13822092-G-A | 11701386-G-A | BY190430 | DYZ17 | + | ||||
16250303-C-T | 14138423-C-T | BY190895 | Y | Y | + | |||
16432411-C-T | 14320531-C-T | BY190940 | Y | Y | + | |||
18426337-C-T | 16314457-C-T | BY191369 | P6_Gap | + | ||||
22316655-C-A | 20154769-C-A | BY3398 | DYZ19 | * | ||||
10051380-A-G | 10213771-A-G | ** | ||||||
13142948-GCATTCCATTC-G | 10632434-GCATTCCATTC-G | 11×CATTC | ** | |||||
18756798-GTTTT-G | 16644918-GTTTT-G | 19×T | ** | |||||
10972907-T-C | ** | |||||||
10664794-C-G | ** | |||||||
21963860-C-A | 19801974-C-A | ** | ||||||
23317720-CT-C | 21155834-CT-C | 10×T | ** | |||||
14785664-C-G | 12673734-C-G | ** | ||||||
10684291-C-T | ** | |||||||
10771935-T-C | ** | |||||||
10771940-C-G | ** | |||||||
15173763-C-A | 13061849-C-A | ** | ||||||
10792413-A-AC | ** | |||||||
10792418-A-C | ** | |||||||
10792419-T-TCCACTGCACTCCGC | ** | |||||||
27424003-C-A | 25277856-C-A | P1_g3 | ** | |||||
13856327-G-GA | 11735621-G-GA | DYZ17 | ** | |||||
11022072-ACTCCT-A | ** | |||||||
10836501-T-C | ** | |||||||
18710379-C-A | 16598499-C-A | ** | ||||||
10884666-TCATTC-T | ** | |||||||
23419514-C-A | 21257628-C-A | ** | ||||||
13856353-G-C | 11735647-G-C | DYZ17 | ** | |||||
6698832-G-GTT | 6830791-G-GTT | 12×T | ** | |||||
23415292-ATATATATG-A | 21253406-ATATATATG-A | ** | ||||||
7655243-G-GA | 7787202-G-GA | 9×A | ** | |||||
14504794-AAAAAG-A | 12392999-AAAAAG-A | 4×AAAAG | ** | |||||
17363326-C-T | 15251446-C-T | ** | ||||||
17363327-A-G | 15251447-A-G | ** | ||||||
11029768-T-C | ** | |||||||
27982179-ATT-A | 25836032-ATT-A | P1_Y2 | ** | |||||
27982182-AT-A | 25836035-AT-A | P1_Y2 | ** | |||||
9989993-G-T | 10152384-G-T | ** | ||||||
56836550-C-A | ** | |||||||
4229526-C-A | 4361485-C-A | ** | ||||||
28514558-C-A | 26368411-C-A | ** | ||||||
11029803-A-C | ** | |||||||
10926542-A-G | ** | |||||||
11029842-T-C | ** | |||||||
11025605-A-C | ** | |||||||
11659080-T-C | DYZ17 | ** | ||||||
14458239-C-A | 12337512-C-A | ** | ||||||
15967558-C-A | 13855678-C-A | ** | ||||||
5313541-C-A | 5445500-C-A | ** | ||||||
10885264-T-G | ** | |||||||
17517162-C-A | 15405282-C-A | ** | ||||||
13466038-G-GGTTT | 11310362-G-GGTTT | ** | ||||||
13466039-TGCAG-T | 11310363-TGCAG-T | ** | ||||||
11005539-C-A | ** | |||||||
11037070-C-A | ** | |||||||
11025594-T-A | ** | |||||||
11025597-T-C | ** | |||||||
15472406-C-A | 13360526-C-A | ** | ||||||
14300948-C-A | 12180242-C-A | ** | ||||||
56763542-A-T | ** | |||||||
7421342-C-A | 7553301-C-A | ** | ||||||
11027040-A-T | ** | |||||||
11027054-C-G | ** | |||||||
11027061-T-A | ** | |||||||
10771924-T-C | ** | |||||||
56763568-C-A | ** | |||||||
10987245-T-A | ** | |||||||
6593456-C-A | 6725415-C-A | ** | ||||||
18316156-A-AG | 16204276-A-AG | P6_Prx | ** | |||||
14806127-C-A | 12694198-C-A | ** | ||||||
10673577-C-A | ** | |||||||
10630689-C-T | ** | |||||||
18949623-C-A | 16837743-C-A | ** | ||||||
11025565-A-T | ** | |||||||
11025588-G-A | ** | |||||||
11025608-A-G | ** | |||||||
14785659-A-G | 12673729-A-G | ** | ||||||
6996842-G-A | 7128801-G-A | FGC57751 | ** | |||||
14453709-GAAAA-G | 12332982-GAAAA-G | 18×A | ** | |||||
7974149-C-A | 8106108-C-A | ** | ||||||
23272347-T-G | 21110461-T-G | ** | ||||||
19509775-T-C | 17397895-T-C | ** | ||||||
7228300-C-A | 7360259-C-A | ** | ||||||
18614512-C-A | 16502632-C-A | ** | ||||||
3950900-C-A | 4082859-C-A | ** | ||||||
10817368-C-A | ** | |||||||
21305091-C-A | 19143205-C-A | ** | ||||||
2788257-G-A | 2920216-G-A | ** | ||||||
11659074-AC-A | DYZ17 | ** | ||||||
3267711-C-A | 3399670-C-A | ** | ||||||
18688493-C-A | 16576613-C-A | ** | ||||||
10987275-G-T | ** | |||||||
21953535-C-T | 19791649-C-T | 15×T | ** | |||||
27423998-G-T | 25277851-G-T | P1_g3 | ** | |||||
18443468-G-T | 16331588-G-T | P6_Dst | ** | |||||
21542044-C-A | 19380158-C-A | ** | ||||||
9437334-C-A | 9599725-C-A | ** | ||||||
16345135-C-T | 14233255-C-T | FT13294 | 18×TCT | ** | ||||
28793783-G-C | 26647636-G-C | ** | ||||||
16491444-G-A | 14379564-G-A | ** | ||||||
26514952-C-CAA | 24368805-C-CAA | P1_Y1 | ** | |||||
9928143-C-A | 10090534-C-A | ** | ||||||
21563028-T-C | 19401142-T-C | ** | ||||||
10841053-A-T | ** | |||||||
7013323-C-A | 7145282-C-A | ** | ||||||
14449775-C-A | 12329048-C-A | ** | ||||||
11016328-A-T | ** | |||||||
3012765-C-CAT | 3144724-C-CAT | ** | ||||||
15542607-C-A | 13430727-C-A | ** | ||||||
28492418-C-A | 26346271-C-A | ** | ||||||
11007574-T-A | ** | |||||||
11005477-G-A | ** | |||||||
22974276-C-A | 20812390-C-A | ** | ||||||
10662769-C-A | ** | |||||||
10772627-A-C | ** | |||||||
7183580-C-A | 7315539-C-A | ** | ||||||
22520811-AG-T | 20358925-AG-T | ** | ||||||
9639196-C-A | 9801587-C-A | IR3_Prx | ** | |||||
21238149-C-A | 19076263-C-A | ** | ||||||
28742651-C-A | 26596504-C-A | ** | ||||||
3592601-C-A | 3724560-C-A | ** | ||||||
10772750-G-T | ** | |||||||
23531728-C-A | 21369842-C-A | ** | ||||||
8987612-A-C | 9150003-A-C | ** | ||||||
23333883-C-A | 21171997-C-A | ** | ||||||
10647971-C-A | ** | |||||||
10949590-C-T | ** | |||||||
9993490-C-A | 10155881-C-A | ** | ||||||
10987185-T-C | ** | |||||||
7976634-C-A | 8108593-C-A | ** | ||||||
13613683-C-A | 11458007-C-A | ** | ||||||
6520065-C-A | 6652024-C-A | ** | ||||||
7234440-C-A | 7366399-C-A | ** | ||||||
11007545-C-T | ** | |||||||
11007581-C-A | ** | |||||||
15787931-C-A | 13676051-C-A | ** | ||||||
21104964-ATT-A | 18943078-ATT-A | 11×T | ** | |||||
22815526-A-TT | 20653640-A-TT | ** | ||||||
21153152-C-A | 18991266-C-A | ** | ||||||
23046177-G-A | 20884291-G-A | ** | ||||||
13460579-A-T | 11304903-A-T | ** | ||||||
15439985-C-A | 13328105-C-A | ** | ||||||
2799550-G-A | 2931509-G-A | ** | ||||||
2799587-A-G | 2931546-A-G | ** | ||||||
14249540-C-A | 12128834-C-A | ** | ||||||
11026020-C-CTCCAT | ** | |||||||
18235683-C-CAA | 16123803-C-CAA | 12×A | ** | |||||
19135109-C-A | 17023229-C-A | ** | ||||||
17716677-C-A | 15604797-C-A | ** | ||||||
8051978-C-A | 8183937-C-A | ** | ||||||
6248919-GAAAAAAGC-G | 6380878-GAAAAAAGC-G | IR3_Dst | ** | |||||
19931621-G-GAT | 17819741-G-GAT | P5_Prx | ** | |||||
22236942-A-C | 20075056-A-C | DYZ19 | ** | |||||
8776844-C-A | 8908803-C-A | ** | ||||||
10655781-C-A | ** | |||||||
22804144-AT-A | 20642258-AT-A | ** | ||||||
2741360-C-A | 2873319-C-A | ** | ||||||
15733708-CAA-C | 13621828-CAA-C | 11×A | ** | |||||
11008663-A-G | ** | |||||||
28514917-C-A | 26368770-C-A | ** | ||||||
4088214-C-A | 4220173-C-A | ** | ||||||
10973831-T-C | ** | |||||||
4756332-C-A | 4888291-C-A | ** | ||||||
19286264-C-A | 17174384-C-A | ** | ||||||
28478802-C-A | 26332655-C-A | ** | ||||||
14622169-C-T | 12510367-C-T | FGC5227 | ** | |||||
11037072-C-G | ** | |||||||
10928791-C-A | ** | |||||||
18769416-C-A | 16657536-C-A | ** | ||||||
10987270-A-T | ** | |||||||
13594372-G-T | 11438696-G-T | ** | ||||||
3798365-C-A | 3930324-C-A | ** | ||||||
17110788-C-A | 14998908-C-A | ** | ||||||
10941076-C-A | ** | |||||||
24458731-C-A | 22312584-C-A | ** | ||||||
7144067-G-A | 7276026-G-A | ** | ||||||
28763510-C-A | 26617363-C-A | ** | ||||||
11008673-G-T | ** | |||||||
15489390-T-C | 13377510-T-C | ** | ||||||
2741363-C-T | 2873322-C-T | ** | ||||||
2783198-C-A | 2915157-C-A | ** | ||||||
2798964-C-A | 2930923-C-A | ** | ||||||
2799588-T-C | 2931547-T-C | ** | ||||||
2811097-C-A | 2943056-C-A | ** | ||||||
2859228-T-A | 2991187-T-A | ** | ||||||
2860664-T-C | 2992623-T-C | ** | ||||||
2907123-G-A | 3039082-G-A | ** | ||||||
3023595-C-A | 3155554-C-A | ** | ||||||
3253198-A-C | 3385157-A-C | ** | ||||||
3621344-T-G | 3753303-T-G | ** | ||||||
3770738-C-A | 3902697-C-A | ** | ||||||
4093606-C-A | 4225565-C-A | ** | ||||||
4243134-C-A | 4375093-C-A | ** | ||||||
4371026-G-T | 4502985-G-T | ** | ||||||
4781003-T-G | 4912962-T-G | ** | ||||||
4804713-T-C | 4936672-T-C | ** | ||||||
5743198-C-A | 5875157-C-A | ** | ||||||
6249935-C-A | 6381894-C-A | IR3_Dst | ** | |||||
6277359-G-GGC | 6409318-G-GGC | IR3_Dst | ** | |||||
6291097-G-T | 6423056-G-T | IR3_Dst | ** | |||||
6348099-A-G | 6480058-A-G | ** | ||||||
6354650-A-G | 6486609-A-G | ** | ||||||
6363131-A-G | 6495090-A-G | ** | ||||||
6397414-A-G | 6529373-A-G | ** | ||||||
6872560-C-A | 7004519-C-A | ** | ||||||
6890399-C-A | 7022358-C-A | ** | ||||||
6954849-G-C | 7086808-G-C | ** | ||||||
7035751-A-G | 7167710-A-G | ** | ||||||
7213105-CAG-C | 7345064-CAG-C | ** | ||||||
7228438-C-A | 7360397-C-A | ** | ||||||
7311192-A-T | 7443151-A-T | ** | ||||||
7330622-C-A | 7462581-C-A | ** | ||||||
7358084-T-A | 7490043-T-A | ** | ||||||
7368850-T-C | 7500809-T-C | ** | ||||||
7401054-C-A | 7533013-C-A | ** | ||||||
7423881-A-C | 7555840-A-C | ** | ||||||
7724681-G-T | 7856640-G-T | ** | ||||||
7749483-G-A | 7881442-G-A | FT65004 | ** | |||||
7756738-C-A | 7888697-C-A | ** | ||||||
7962996-A-G | 8094955-A-G | ** | ||||||
8070100-G-A | 8202059-G-A | FT185480 | ** | |||||
8102086-A-G | 8234045-A-G | ** | ||||||
8143535-T-G | 8275494-T-G | ** | ||||||
8750094-A-G | 8882053-A-G | ** | ||||||
8788798-C-T | 8920757-C-T | ** | ||||||
8844733-C-A | 8976692-C-A | ** | ||||||
9178529-G-A | 9340920-G-A | ** | ||||||
9601586-C-CTTTT | 9763977-C-CTTTT | IR3_Prx | 16×T | ** | ||||
9707092-A-C | 9869483-A-C | IR3_Prx | ** | |||||
9707102-A-C | 9869493-A-C | IR3_Prx | ** | |||||
9707112-T-G | 9869503-T-G | IR3_Prx | ** | |||||
9859209-A-T | 10021600-A-T | ** | ||||||
10684101-C-A | ** | |||||||
10690816-G-T | ** | |||||||
10693757-T-C | ** | |||||||
10753778-C-A | ** | |||||||
10758367-T-G | ** | |||||||
10764976-C-A | ** | |||||||
10789178-T-C | ** | |||||||
10813189-C-A | ** | |||||||
10826550-T-G | ** | |||||||
10826728-C-A | ** | |||||||
10827767-C-A | FT432996 | ** | ||||||
10924988-C-T | ** | |||||||
10932957-CTACAT-C | ** | |||||||
10949568-C-T | ** | |||||||
10949591-T-C | ** | |||||||
10949601-T-TC | ** | |||||||
10949606-T-C | ** | |||||||
10949614-A-G | ** | |||||||
10954754-T-G | ** | |||||||
10963360-C-A | FT438400 | ** | ||||||
10981555-AC-A | ** | |||||||
11008676-C-G | ** | |||||||
11008680-C-T | ** | |||||||
11008685-T-A | ** | |||||||
11026065-C-A | ** | |||||||
13202792-C-A | 11047116-C-A | ** | ||||||
13350871-A-C | 11195195-A-C | ** | ||||||
13485832-C-A | 11330156-C-A | ** | ||||||
13513084-G-A | 11357408-G-A | ** | ||||||
11647431-C-A | DYZ17 | ** | ||||||
11666567-G-A | DYZ17 | ** | ||||||
11666571-G-C | DYZ17 | ** | ||||||
13923836-G-A | 11803130-G-A | ** | ||||||
14060084-CT-C | 11939378-CT-C | ** | ||||||
14069293-C-A | 11948587-C-A | ** | ||||||
14296373-C-A | 12175667-C-A | ** | ||||||
14350278-A-G | 12229573-A-G | ** | ||||||
14350279-T-G | 12229574-T-G | ** | ||||||
14361019-C-A | 12240314-C-A | ** | ||||||
14430604-C-T | 12309877-C-T | ** | ||||||
14464368-C-A | 12343641-C-A | ** | ||||||
14473611-C-A | 12352880-C-A | ** | ||||||
14520782-T-C | 12408983-T-C | ** | ||||||
14560170-G-T | 12448371-G-T | ** | ||||||
14622177-C-G | 12510375-C-G | ** | ||||||
14735333-C-A | 12623401-C-A | ** | ||||||
14779679-C-A | 12667749-C-A | ** | ||||||
14817228-C-A | 12705299-C-A | ** | ||||||
14844975-C-A | 12733041-C-A | ** | ||||||
14852984-T-C | 12741050-T-C | ** | ||||||
14939701-C-A | 12827775-C-A | ** | ||||||
14970337-C-A | 12858412-C-A | ** | ||||||
15126120-A-C | 13014207-A-C | ** | ||||||
15126126-T-C | 13014213-T-C | ** | ||||||
15212269-C-A | 13100355-C-A | BY100211 | ** | |||||
15260228-A-G | 13148312-A-G | ** | ||||||
15315309-C-A | 13203414-C-A | ** | ||||||
15410414-C-G | 13298534-C-G | ** | ||||||
15417795-C-A | 13305915-C-A | ** | ||||||
15426201-G-A | 13314321-G-A | ** | ||||||
15429331-C-A | 13317451-C-A | ** | ||||||
15476389-C-A | 13364509-C-A | ** | ||||||
15515318-C-A | 13403438-C-A | ** | ||||||
15607944-C-A | 13496064-C-A | ** | ||||||
15623411-C-A | 13511531-C-A | ** | ||||||
15623435-C-T | 13511555-C-T | ** | ||||||
15844859-C-A | 13732979-C-A | ** | ||||||
15866313-AAGG-A | 13754433-AAGG-A | ** | ||||||
15911629-C-A | 13799749-C-A | ** | ||||||
15995056-C-A | 13883176-C-A | ** | ||||||
16006205-G-A | 13894325-G-A | ** | ||||||
16032916-C-A | 13921036-C-A | ** | ||||||
16056848-G-A | 13944968-G-A | ** | ||||||
16342153-A-T | 14230273-A-T | ** | ||||||
16342154-A-T | 14230274-A-T | ** | ||||||
16342156-A-T | 14230276-A-T | ** | ||||||
16342189-A-T | 14230309-A-T | ** | ||||||
16364075-TATATATATA-T | 14252195-TATATATATA-T | ** | ||||||
16364085-TA-T | 14252205-TA-T | ** | ||||||
16364101-T-A | 14252221-T-A | ** | ||||||
16520412-C-A | 14408532-C-A | FT3109 | ** | |||||
16782194-C-A | 14670314-C-A | ** | ||||||
16821901-A-G | 14710021-A-G | ** | ||||||
16897536-CAG-C | 14785656-CAG-C | ** | ||||||
16944937-AGG-A | 14833057-AGG-A | ** | ||||||
16960117-TG-T | 14848237-TG-T | ** | ||||||
17283832-C-A | 15171952-C-A | ** | ||||||
17334113-A-G | 15222233-A-G | ** | ||||||
17334118-G-A | 15222238-G-A | ** | ||||||
17334120-T-C | 15222240-T-C | ** | ||||||
17492861-C-A | 15380981-C-A | ** | ||||||
17624503-CT-C | 15512623-CT-C | ** | ||||||
17648198-G-A | 15536318-G-A | ** | ||||||
17650350-C-A | 15538470-C-A | ** | ||||||
17794352-T-C | 15682472-T-C | ** | ||||||
17817843-G-A | 15705963-G-A | ** | ||||||
18188231-T-A | 16076351-T-A | ** | ||||||
18253153-C-T | 16141273-C-T | ** | ||||||
18381866-C-A | 16269986-C-A | P6_Gap | ** | |||||
18570025-T-C | 16458145-T-C | ** | ||||||
18597956-C-A | 16486076-C-A | ** | ||||||
18654700-C-A | 16542820-C-A | ** | ||||||
18666169-T-C | 16554289-T-C | ** | ||||||
18756905-C-A | 16645025-C-A | ** | ||||||
18890461-CAACAAA-C | 16778581-CAACAAA-C | ** | ||||||
18891352-C-A | 16779472-C-A | ** | ||||||
18951765-C-A | 16839885-C-A | ** | ||||||
18976717-C-A | 16864837-C-A | ** | ||||||
19144129-T-C | 17032249-T-C | ** | ||||||
19247696-C-A | 17135816-C-A | ** | ||||||
19275277-G-A | 17163397-G-A | ** | ||||||
19286478-G-T | 17174598-G-T | ** | ||||||
19338235-G-A | 17226355-G-A | ** | ||||||
19393398-G-A | 17281518-G-A | ** | ||||||
19415359-A-T | 17303479-A-T | ** | ||||||
19516925-C-A | 17405045-C-A | ** | ||||||
20409551-C-A | 18247665-C-A | P5_Dst | ** | |||||
21117039-C-A | 18955153-C-A | ** | ||||||
21136772-T-A | 18974886-T-A | ** | ||||||
21158976-G-A | 18997090-G-A | ** | ||||||
21248804-A-G | 19086918-A-G | ** | ||||||
21292929-C-A | 19131043-C-A | ** | ||||||
21410277-G-T | 19248391-G-T | ** | ||||||
21514135-A-T | 19352249-A-T | ** | ||||||
21591407-C-A | 19429521-C-A | ** | ||||||
21928669-C-A | 19766783-C-A | ** | ||||||
21950694-C-A | 19788808-C-A | ** | ||||||
22086000-C-A | 19924114-C-A | ** | ||||||
22123167-C-A | 19961281-C-A | ** | ||||||
22159683-C-A | 19997797-C-A | ** | ||||||
22214886-T-G | 20053000-T-G | ** | ||||||
22487770-G-A | 20325884-G-A | DYZ19 | ** | |||||
22563059-C-A | 20401173-C-A | ** | ||||||
22579907-C-A | 20418021-C-A | BY139246 | ** | |||||
22611255-A-C | 20449369-A-C | ** | ||||||
22712890-T-G | 20551004-T-G | ** | ||||||
22791774-C-A | 20629888-C-A | ** | ||||||
22857549-G-T | 20695663-G-T | ** | ||||||
22864385-C-A | 20702499-C-A | ** | ||||||
22938916-T-C | 20777030-T-C | ** | ||||||
23157415-C-A | 20995529-C-A | ** | ||||||
23234688-TTCTC-T | 21072802-TTCTC-T | ** | ||||||
23578591-C-A | 21416705-C-A | ** | ||||||
23648120-C-A | 21486234-C-A | ** | ||||||
23818081-A-G | 21656195-A-G | ** | ||||||
23847958-A-G | 21686072-A-G | ** | ||||||
23853773-G-A | 21691887-G-A | ** | ||||||
23856675-T-C | 21694789-T-C | ** | ||||||
23865301-G-T | 21703415-G-T | ** | ||||||
23981998-C-A | 21835851-C-A | ** | ||||||
24003119-C-A | 21856972-C-A | ** | ||||||
26024612-C-T | 23878465-C-T | P1_Y1 | ** | |||||
27824514-T-G | 25678367-T-G | P1_Y2 | ** | |||||
27860935-T-G | 25714788-T-G | P1_Y2 | ** | |||||
27997753-T-A | 25851606-T-A | P1_Y2 | ** | |||||
28429850-C-A | 26283703-C-A | P1_gr2 | ** | |||||
28478326-G-A | 26332179-G-A | ** | ||||||
28499968-G-A | 26353821-G-A | ** | ||||||
28600887-C-A | 26454740-C-A | ** | ||||||
28639641-G-T | 26493494-G-T | ** | ||||||
28763510-C-CA | 26617363-C-CA | ** | ||||||
28779098-A-G | 26632951-A-G | ** | ||||||
56880146-C-A | ** | |||||||
13856332-G-A | 11735626-G-A | DYZ17 | *** | |||||
7715717-A-C | 7847676-A-C | F1050 M622 V1380 | *** | |||||
13482931-A-C | 11327255-A-C | *** | ||||||
14102381-CT-C | 11981675-CT-C | *** | ||||||
7542819-GA-G | 7674778-GA-G | 10×A | *** | |||||
13478255-C-A | 11322579-C-A | *** | ||||||
13478257-G-T | 11322581-G-T | *** | ||||||
21477990-C-A | 19316104-C-A | *** | ||||||
10926569-C-A,T | *** | |||||||
13453638-C-CAATCGAGTGG | 11297962-C-CAATCGAGTGG | *** | ||||||
10943466-C-A | *** | |||||||
22810034-C-A | 20648148-C-A | *** | ||||||
16633274-C-A | 14521394-C-A | *** | ||||||
8874970-CT-C,CTT | 9006929-CT-C,CTT | 17×T | *** | |||||
15160798-C-A | 13048884-C-A | *** | ||||||
16505918-TAA-T,TAAA | 14394038-TAA-T,TAAA | 12×A | *** | |||||
10985097-T-C | *** | |||||||
10839759-G-T | *** | |||||||
10839769-C-T | *** | |||||||
13856345-A-G | 11735639-A-G | DYZ17 | *** | |||||
16244792-GGTGTGTGT-G,GGTGT | 14132912-GGTGTGTGT-G,GGTGT | 16×GT | *** | |||||
10653719-C-A | *** | |||||||
22038858-C-A | 19876972-C-A | *** | ||||||
10943420-C-A | *** | |||||||
7418073-CAAAAAAA-C | 7550032-CAAAAAAA-C | 22×A | *** | |||||
23096812-C-A | 20934926-C-A | *** | ||||||
23292130-ATT-A | 21130244-ATT-A | 13×T | *** | |||||
21093365-C-A | 18931479-C-A | *** | ||||||
8515192-C-A | 8647151-C-A | *** | ||||||
18083806-C-A | 15971926-C-A | *** | ||||||
22786906-C-A | 20625020-C-A | *** | ||||||
10824114-C-A | *** | |||||||
28589751-C-A | 26443604-C-A | *** | ||||||
23484497-C-A | 21322611-C-A | *** | ||||||
10797719-A-C,T | *** | |||||||
10687996-A-T | *** | |||||||
24434616-G-T | 22288469-G-T | *** | ||||||
2654158-C-A | 2786117-C-A | *** | ||||||
2767147-C-A | 2899106-C-A | *** | ||||||
4872785-C-A | 5004744-C-A | *** | ||||||
4898299-A-G | 5030258-A-G | *** | ||||||
6817905-C-A | 6949864-C-A | *** | ||||||
6921795-C-A | 7053754-C-A | *** | ||||||
6981597-C-A | 7113556-C-A | *** | ||||||
7292453-C-A | 7424412-C-A | *** | ||||||
7512404-C-A | 7644363-C-A | *** | ||||||
7853617-C-A | 7985576-C-A | *** | ||||||
7940000-C-T | 8071959-C-T | *** | ||||||
8096766-C-A | 8228725-C-A | *** | ||||||
8261084-G-A | 8393043-G-A | *** | ||||||
8636122-G-T | 8768081-G-T | *** | ||||||
8689722-T-C | 8821681-T-C | *** | ||||||
9457745-A-T | 9620136-A-T | *** | ||||||
9880471-A-G | 10042862-A-G | *** | ||||||
9881188-C-A | 10043579-C-A | *** | ||||||
10839746-C-A | *** | |||||||
10839763-A-T | *** | |||||||
10839774-C-T | FT433572 | *** | ||||||
13461997-T-C | 11306321-T-C | *** | ||||||
14092126-C-G | 11971420-C-G | *** | ||||||
14180825-G-A | 12060119-G-A | *** | ||||||
14318662-C-A | 12197956-C-A | *** | ||||||
14373935-T-C | 12253231-T-C | *** | ||||||
14411242-A-G | 12290539-A-G | *** | ||||||
14411260-C-A | 12290557-C-A | *** | ||||||
14591887-C-A | 12480087-C-A | *** | ||||||
14787423-C-A | 12675493-C-A | *** | ||||||
14822448-C-A | 12710515-C-A | *** | ||||||
15567151-C-A | 13455271-C-A | *** | ||||||
16478321-C-A | 14366441-C-A | *** | ||||||
16515570-AAAAT-A | 14403690-AAAAT-A | *** | ||||||
16735410-C-A | 14623530-C-A | *** | ||||||
16834328-C-A | 14722448-C-A | *** | ||||||
17040704-C-A | 14928824-C-A | *** | ||||||
17129928-C-A | 15018048-C-A | *** | ||||||
17208358-C-A | 15096478-C-A | *** | ||||||
17425333-C-A | 15313453-C-A | *** | ||||||
18072905-C-A | 15961025-C-A | *** | ||||||
18127352-C-A | 16015472-C-A | *** | ||||||
18161167-C-A | 16049287-C-A | *** | ||||||
18593997-C-A | 16482117-C-A | *** | ||||||
18693812-A-G | 16581932-A-G | *** | ||||||
19263137-C-A | 17151257-C-A | *** | ||||||
20379735-G-T | 18217849-G-T | P5_Dst | *** | |||||
20723305-G-T | 18561419-G-T | P4_Prx | *** | |||||
21031362-C-A | 18869476-C-A | P4_Dst | *** | |||||
21092842-C-A | 18930956-C-A | *** | ||||||
21211511-AGGCACT-A | 19049625-AGGCACT-A | *** | ||||||
21233502-C-A | 19071616-C-A | *** | ||||||
21341739-T-C | 19179853-T-C | *** | ||||||
21364567-T-G | 19202681-T-G | *** | ||||||
21426844-C-A | 19264958-C-A | *** | ||||||
21505463-C-A | 19343577-C-A | *** | ||||||
22581029-C-A | 20419143-C-A | *** | ||||||
22650594-C-A | 20488708-C-A | *** | ||||||
23022901-T-C | 20861015-T-C | *** | ||||||
23045055-C-A | 20883169-C-A | *** | ||||||
23138045-C-A | 20976159-C-A | *** | ||||||
23188819-G-A | 21026933-G-A | *** | ||||||
23257735-C-A | 21095849-C-A | *** | ||||||
23470789-A-G | 21308903-A-G | *** | ||||||
23534326-A-G | 21372440-A-G | FT26689 | *** | |||||
23554746-TA-T | 21392860-TA-T | *** | ||||||
23822099-C-A | 21660213-C-A | *** | ||||||
21750897-T-C | *** | |||||||
23982563-G-T | 21836416-G-T | *** | ||||||
24397622-G-T | 22251475-G-T | *** | ||||||
28608945-C-A | 26462798-C-A | *** | ||||||
56835277-C-A | *** | |||||||
16764-G-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.