Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > 7331194-A-AT > SK1907

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
139555
13695471-G-A 11539795-G-A A+
13695475-A-C 11539799-A-C A+
20132001-A-G 18020121-A-G ZS1882 P5_Dst A+
22254545-C-T 20092659-C-T DYZ19 A*
19782459-C-G 17670579-C-G P5_Prx A*
25974652-C-A 23828505-C-A P1_Y1 A*
26156385-G-C 24010238-G-C P1_Y1 A*
26194769-T-C 24048622-T-C P1_Y1 A*
26312186-T-C 24166039-T-C P1_Y1 A*
13489783-C-A 11334107-C-A A*
13449864-G-T 11294188-G-T A*
20772731-G-A 18610845-G-A P4_Prx A*
19623038-C-T 17511158-C-T P5_Prx A*
13842730-G-GTGGAA 11722024-G-GTGGAA 12×TGGAAA*
11643763-G-A A*
17301330-G-T 15189450-G-T BY172520 YY+
16329908-TATC-T 14218028-TATC-T +
16676229-T-C 14564349-T-C BY172524 Y+
7845599-A-T 7977558-A-T BY172526 YY+
21976559-C-T 19814673-C-T BY172523 YY+
16912958-CTGAAT-C 14801078-CTGAAT-C +
7803772-G-T 7935731-G-T BY172516 YY+
17349815-A-T 15237935-A-T BY172521 YY+
17880490-C-T 15768610-C-T BY172518 YY+
18076082-A-G 15964202-A-G BY172519 YY+
18917671-A-T 16805791-A-T BY172525 YY+
19033508-C-A 16921628-C-A BY172514 YY+
8582679-G-C 8714638-G-C BY172515 YY+
20806584-C-G 18644698-C-G BY212418 P4_Gap +
22506593-G-A 20344707-G-A BY225232 DYZ19 +
18390697-C-T 16278817-C-T BY172528 P6_Gap +
8070300-G-T 8202259-G-T BY172522 YY+
15223433-ATTCCTT-A 13111519-ATTCCTT-A +
14046196-C-T 11925490-C-T YY+
14529815-C-G 12418016-C-G BY172517 YY+
13711046-G-T 11555370-G-T +
28496786-T-C 26350639-T-C BY172527 Y+
25850632-C-T 23704485-C-T BY226416 P1_Y1 +
13677199-G-T 11521523-G-T BY57366 SK1925Z14583 +
15223423-GGTCTCT-G 13111509-GGTCTCT-G +
15223431-T-TG 13111517-T-TG +
18070661-A-ATG 15958781-A-ATG 12×TG*
9361296-G-C 9523687-G-C Y*
14612378-TAGATAGAC-T,TAGATAGAT 12500584-TAGATAGAC-T,TAGATAGAT *
22508381-G-C 20346495-G-C DYZ19 *
22315683-C-T 20153797-C-T DYZ19 *
22303245-A-G 20141359-A-G DYZ19 *
22280942-C-G 20119056-C-G DYZ19 *
8369533-C-T 8501492-C-T **
13257937-C-G 11102261-C-G **
9524054-T-C 9686445-T-C **
9117200-C-T 9279591-C-T **
9094418-C-A 9256809-C-A **
8389744-T-A 8521703-T-A **
13456696-C-A 11301020-C-A **
8235435-T-C 8367394-T-C **
8296901-T-C 8428860-T-C **
13587810-C-A 11432134-C-A **
13465641-C-T 11309965-C-T **
13488707-C-T 11333031-C-T **
10935583-A-AT **
10653184-C-A **
13202616-C-A 11046940-C-A **
11014164-C-A **
10910969-C-A **
10975892-C-A **
10987477-T-C **
10892544-AT-A **
10788015-TC-T **
10987522-T-TGAATA **
11032941-C-A **
9839568-A-AAC 10001959-A-AAC **
10784422-A-T **
10778447-C-A **
10692832-C-A **
10663305-C-A **
10654810-C-A **
13202566-C-A 11046890-C-A **
10935580-TC-T **
13855513-A-G 11734807-A-G **
7115978-T-C 7247937-T-C **
8093620-G-T 8225579-G-T **
18712794-T-C 16600914-T-C **
3409199-C-A 3541158-C-A **
3276150-G-T 3408109-G-T **
3272757-C-T 3404716-C-T **
2842973-C-A 2974932-C-A **
2817934-C-A 2949893-C-A **
3696927-G-T 3828886-G-T **
28492415-G-A 26346268-G-A **
14557798-G-A 12445999-G-A **
5249232-C-A 5381191-C-A **
18455854-ATG-A 16343974-ATG-A P6_Dst **
3846831-A-G 3978790-A-G **
56839370-C-A **
10880768-C-A **
19496274-C-A 17384394-C-A **
10654818-C-A **
13488698-A-C 11333022-A-C **
19463512-C-A 17351632-C-A **
10983386-C-A **
23590958-T-A 21429072-T-A **
13810896-A-C 11690190-A-C **
22549990-C-A 20388104-C-A **
3732525-T-C 3864484-T-C **
4104121-G-T 4236080-G-T **
7337420-G-A 7469379-G-A **
6996844-C-T 7128803-C-T **
7313119-G-T 7445078-G-T **
7269910-C-A 7401869-C-A **
7240538-G-A 7372497-G-A **
7217386-C-A 7349345-C-A **
7172040-C-A 7303999-C-A **
7152947-C-A 7284906-C-A **
7132991-A-G 7264950-A-G **
11650346-G-T **
7090602-C-A 7222561-C-A **
6996841-C-T 7128800-C-T **
4145498-C-CT 4277457-C-CT 8×T**
6954871-C-T 7086830-C-T **
6790763-C-A 6922722-C-A **
6775260-C-CA 6907219-C-CA **
6384258-C-A 6516217-C-A **
5802010-C-A 5933969-C-A **
5581487-G-T 5713446-G-T **
5240877-C-T 5372836-C-T **
4433696-C-A 4565655-C-A **
4366057-C-A 4498016-C-A **
4270754-C-A 4402713-C-A **
11644276-G-A **
15971542-T-G 13859662-T-G **
11674649-G-A **
21616114-C-A 19454228-C-A **
22023396-G-C 19861510-G-C **
22023371-A-ATTTTT 19861485-A-ATTTTT **
22023342-T-C 19861456-T-C **
22023328-C-T 19861442-C-T **
21824837-C-A 19662951-C-A **
21821325-C-A 19659439-C-A **
21638988-C-G 19477102-C-G **
21625286-C-A 19463400-C-A **
21451413-T-A 19289527-T-A **
22529718-T-C 20367832-T-C **
21444871-AT-A 19282985-AT-A 8×T**
21388712-C-A 19226826-C-A **
21384862-C-A 19222976-C-A **
21138667-G-A 18976781-G-A **
20342252-A-T 18180366-A-T P5_Dst **
20342235-A-T 18180349-A-T P5_Dst **
19706202-C-A 17594322-C-A P5_Prx **
19706192-C-A 17594312-C-A P5_Prx **
19479836-A-T 17367956-A-T **
22023405-C-CG 19861519-C-CG **
22914468-G-A 20752582-G-A **
19302757-G-T 17190877-G-T **
28477723-C-G 26331576-C-G **
56847548-A-G **
56839433-A-T **
56839388-C-A **
56839323-T-C **
56837450-C-A **
56834895-C-A **
56734853-T-C **
28698612-T-C 26552465-T-C **
27737608-TA-T 25591461-TA-T P1_Y2 **
22974696-C-A 20812810-C-A **
24871313-T-G 22725166-T-G P3_b2 **
24421961-T-C 22275814-T-C **
23876550-G-T 21714664-G-T **
23590965-C-CCT 21429079-C-CCT **
23590954-G-T 21429068-G-T **
23590952-G-A 21429066-G-A **
23590949-C-T 21429063-C-T **
23272342-TTTCTTTCC-T 21110456-TTTCTTTCC-T **
23206954-T-A 21045068-T-A **
19303676-G-A 17191796-G-A **
18994582-G-T 16882702-G-T **
13961822-A-C 11841116-A-C **
15842798-T-C 13730918-T-C **
16235225-G-A 14123345-G-A **
16084258-T-C 13972378-T-C **
16051168-T-A 13939288-T-A **
16049160-C-A 13937280-C-A **
16038099-C-T 13926219-C-T **
15971565-T-G 13859685-T-G **
17547587-C-A 15435707-C-A **
15842799-G-C 13730919-G-C **
15366188-G-T 13254308-G-T **
17098809-G-A 14986929-G-A **
14824063-A-T 12712130-A-T **
14695966-C-G 12584032-C-G **
14413094-A-G 12292391-A-G **
14413085-G-T 12292382-G-T **
14298076-A-G 12177370-A-G **
14298067-A-T 12177361-A-T **
14234569-T-C 12113863-T-C **
14104040-G-A 11983334-G-A **
14025525-C-A 11904819-C-A **
16719526-C-T 14607646-C-T **
17136875-A-G 15024995-A-G **
18930190-G-T 16818310-G-T **
18195839-C-A 16083959-C-A **
18857000-G-T 16745120-G-T **
18849530-C-T 16737650-C-T **
18708043-A-G 16596163-A-G **
18708042-C-T 16596162-C-T **
18708037-A-T 16596157-A-T **
18465323-C-T 16353443-C-T P6_Dst **
18344561-C-A 16232681-C-A P6_Prx **
18344529-TTGTGTG-T 16232649-TTGTGTG-T P6_Prx 13×TG**
18029571-A-G 15917691-A-G **
17220419-A-T 15108539-A-T **
17993898-C-CG 15882018-C-CG P7_Prx **
17993886-G-A 15882006-G-A P7_Prx **
17774926-G-T 15663046-G-T **
17770221-G-A 15658341-G-A **
17770219-C-T 15658339-C-T **
17504625-C-A 15392745-C-A **
17444646-T-C 15332766-T-C **
17416953-C-A 15305073-C-A **
17274187-C-A 15162307-C-A **
17065076-G-T 14953196-G-T **
21755577-C-A **
22023371-A-T 19861485-A-T **
22855351-G-T 20693465-G-T **
22241183-A-C 20079297-A-C DYZ19 **
13973968-C-A 11853262-C-A **
16305923-TCAAAA-T 14194043-TCAAAA-T **
11645102-G-T **
10877838-C-G **
10877799-A-C **
10877788-C-T **
10954705-C-A **
17369247-C-G 15257367-C-G **
13461058-C-T 11305382-C-T **
10796662-C-CA **
28370106-G-T 26223959-G-T P1_gr2 **
10673914-A-ATTATG **
10673862-C-G **
10673855-C-G **
10669399-C-A **
18708027-C-A 16596147-C-A **
28802769-A-T 26656622-A-T **
28795714-T-A 26649567-T-A **
15361233-C-A 13249353-C-A **
10746929-ATTCCATTCTGTT-A **
10796666-C-CGTTT **
14379157-C-A 12258453-C-A **
13478361-G-A 11322685-G-A **
9502510-T-G 9664901-T-G **
10803771-T-C **
15680217-C-A 13568337-C-A **
14298056-T-TA 12177350-T-TA **
21315016-C-A 19153130-C-A **
19547832-G-A 17435952-G-A **
4201531-C-A 4333490-C-A **
10647961-C-A **
27692868-A-G 25546721-A-G P1_Y2 **
10669420-T-A **
18739569-C-A 16627689-C-A **
19187664-G-A 17075784-G-A **
10669393-C-CCCTACACTA **
10669380-A-C **
22023357-T-C 19861471-T-C **
10669376-T-C **
10669368-C-T **
6996859-AT-A 7128818-AT-A **
18708045-T-G 16596165-T-G **
10987758-C-A BY27107 **
13748310-T-A 11592634-T-A **
58980991-C-G 56834844-C-G **
10801526-C-T **
16818971-GTATATATATATA-G 14707091-GTATATATATATA-G 21×TA**
13855564-T-C 11734858-T-C **
10940429-A-T **
13290992-A-G 11135316-A-G **
10673918-CA-C **
10747008-C-A BY83736 **
28779076-C-A 26632929-C-A **
10987561-T-G **
11650358-A-T **
18244602-C-CTA 16132722-C-CTA **
17604931-G-GTTTT 15493051-G-GTTTT 24×T**
13810918-G-A 11690212-G-A **
15612217-T-C 13500337-T-C F19970 **
13958496-A-G 11837790-A-G **
13958495-C-T 11837789-C-T **
19668782-T-TA 17556902-T-TA P5_Prx 33×A**
13489366-C-G 11333690-C-G **
9622370-TTG-T 9784761-TTG-T IR3_Prx **
22962057-G-A 20800171-G-A **
13855566-G-C 11734860-G-C **
6780870-C-CA 6912829-C-CA 26×A**
10892544-A-C **
13810923-G-C 11690217-G-C **
6102384-C-A 6234343-C-A **
27737606-TA-T 25591459-TA-T P1_Y2 **
10992287-AT-A **
7108615-G-GTA 7240574-G-GTA 9×TA**
13453370-A-G 11297694-A-G **
11037959-A-T **
11037950-C-CTCCA **
11037945-T-C **
27398554-G-T 25252407-G-T P1_g3 **
5336697-TAA-T 5468656-TAA-T 12×A**
15366025-G-T 13254145-G-T **
17187430-C-A 15075550-C-A **
13810933-G-A 11690227-G-A **
3640535-C-CTTT 3772494-C-CTTT **
19732413-C-G 17620533-C-G P5_Prx **
13855549-T-TTTAAA 11734843-T-TTTAAA **
13855537-A-G 11734831-A-G **
13855518-A-T 11734812-A-T **
13855508-A-T 11734802-A-T **
10991651-GTTCCA-G **
10673922-C-CT **
13255071-C-A 11099395-C-A **
5267453-C-A 5399412-C-A **
9107968-G-A **
29874-T-G **
4521779-C-A 4653738-C-A **
6807242-C-A 6939201-C-A **
13471944-G-A 11316268-G-A **
17535584-C-A 15423704-C-A **
18390021-C-A 16278141-C-A P6_Gap **
14298063-CA-C 12177357-CA-C **
8119227-C-A 8251186-C-A **
23145448-C-A 20983562-C-A **
19324294-A-G 17212414-A-G **
16592463-C-A 14480583-C-A **
21136695-C-A 18974809-C-A **
13471976-C-T 11316300-C-T **
9198744-A-G 9361135-A-G **
10763956-G-T **
10763951-C-T **
10763943-A-T **
10987535-A-C **
10763947-T-C **
10763932-A-C **
2855515-G-A 2987474-G-A **
13471953-T-C 11316277-T-C **
13866092-C-A 11745386-C-A **
10020156-C-A 10182547-C-A **
15073391-C-A 12961481-C-A **
13447130-T-C 11291454-T-C **
27692864-G-A 25546717-G-A P1_Y2 **
10864504-C-A **
10977188-C-A **
13556761-C-A 11401085-C-A **
10659898-G-T **
22070355-C-A 19908469-C-A **
13471974-G-T 11316298-G-T **
14553125-C-A 12441326-C-A **
10987484-CAGTCT-C **
14413096-A-C 12292393-A-C **
10987516-T-TTCCA **
8043167-C-A 8175126-C-A **
10953917-C-A **
10776093-T-C **
21152512-CTTTT-C 18990626-CTTTT-C 14×T**
10959393-C-A **
10875931-C-A **
4533734-C-A 4665693-C-A **
11644441-AGGAAT-A **
11650351-A-G **
56839422-G-A **
10801559-T-A **
10801547-C-G **
10824825-T-A **
10824818-C-T **
10824813-A-T **
16952854-C-A 14840974-C-A **
10824807-A-T **
10824800-T-C **
9502492-A-C 9664883-A-C **
6996856-C-A 7128815-C-A **
2817890-CA-C 2949849-CA-C 9×A**
17770213-A-G 15658333-A-G **
10892529-A-G **
11032918-C-A **
10987495-A-T **
21281642-C-A 19119756-C-A **
8556140-C-A 8688099-C-A **
20868952-TAA-T 18707066-TAA-T P4_Dst 12×A**
21136688-C-A 18974802-C-A **
28610139-C-A 26463992-C-A **
22335798-C-A 20173912-C-A DYZ19 **
3640536-C-CT 3772495-C-CT **
13471983-G-T 11316307-G-T **
56830038-C-A,G ***
24503106-CA-C,CAA 22356959-CA-C,CAA 16×A***
15381487-C-CA 13269607-C-CA 9×A***
22521114-TC-T 20359228-TC-T ***
22528332-G-A 20366446-G-A ***
8399047-G-T 8531006-G-T ***
22633850-C-A 20471964-C-A ***
14753642-G-GA 12641711-G-GA 10×A***
13712658-G-A 11556982-G-A ***
23188771-C-A 21026885-C-A ***
15750502-CTT-C,CT 13638622-CTT-C,CT 18×T***
10776553-A-T ***
7244073-G-A 7376032-G-A L477FGC13661 ***
21923295-AT-A,ATT 19761409-AT-A,ATT 15×T***
58974807-A-T 56828660-A-T ***
17313283-T-C 15201403-T-C FGC21859 Z3357 ***
28777092-C-T 26630945-C-T ***
7868225-C-CA 8000184-C-CA 9×A***
5720833-T-TA 5852792-T-TA 9×A***
56822741-A-G,T ***
5073542-A-AAT 5205501-A-AAT ***
17859662-C-A 15747782-C-A ***
14250353-A-T 12129647-A-T ***
14247765-C-A 12127059-C-A ***
10801695-T-G ***
9793445-AT-A 9955836-AT-A 10×T***
22783159-C-CAA 20621273-C-CAA 17×A***
22188682-AACACACAC-A 20026796-AACACACAC-A 23×AC***
8117304-C-A 8249263-C-A ***
56828658-C-G ***
7725612-C-A 7857571-C-A ***
13484088-C-A 11328412-C-A ***
19009423-C-A 16897543-C-A ***
14502102-C-A 12390307-C-A ***
15057738-ATTT-A,ATT 12945830-ATTT-A,ATT 18×T***
18895186-T-C 16783306-T-C ***
10776544-T-A ***
17284532-CTTTTTT-C 15172652-CTTTTTT-C 21×T***
2860458-GTT-G,GT 2992417-GTT-G,GT 18×T***
6000623-G-T 6132582-G-T ***
10987870-A-AT ***
16823952-TAA-T,TAAA 14712072-TAA-T,TAAA 17×A***
7636032-TACTAGA-T 7767991-TACTAGA-T ***
8468065-CAA-C,CAAA 8600024-CAA-C,CAAA 24×A***
3790878-GTATA-G,GTA 3922837-GTATA-G,GTA 21×TA***
13489823-T-G 11334147-T-G ***
6808656-C-A 6940615-C-A ***
10796680-T-TCCGCA ***
10801674-T-TTTCGC ***
3436236-C-A 3568195-C-A ***
15928819-C-A 13816939-C-A ***
7868975-G-GAA 8000934-G-GAA 16×A***
21253842-G-T 19091956-G-T ***
5393328-ACAG-A 5525287-ACAG-A ***
10796647-C-G ***
56828621-T-G ***
14272683-C-A 12151977-C-A ***
11035606-C-T ***
8049729-C-A 8181688-C-A ***
22914674-CAAAA-C,CAA 20752788-CAAAA-C,CAA 27×A***
56828673-C-G ***
58974822-A-T 56828675-A-T ***
56828684-C-T ***
17307246-CATTGC-C,CATTGT 15195366-CATTGC-C,CATTGT ***
22757750-C-A 20595864-C-A ***
56828827-TGCATTCAATT-A ***
6664355-T-A 6796314-T-A ***
15495909-C-A 13384029-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 139555913224674872567433935
Used in age calculations913224674872567433935
Counts of SNPs1615
Variant counts last updated 2019-08-26 23:03:59.



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