Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > Z51 > BY158668 > 20893039-T-C > BY33655

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
344707
22232873-T-C 20070987-T-C DYZ19 A*
28816625-T-C 26670478-T-C A*
26247201-A-T 24101054-A-T P1_Y1 A*
22316818-T-A 20154932-T-A DYZ19 A*
28817312-A-T 26671165-A-T A*
17403491-C-A 15291611-C-A BY195052 YY+
7932384-A-G 8064343-A-G BY193429 YY+
6970515-C-G 7102474-C-G BY62620 YY+
7823323-T-C 7955282-T-C BY193391 YY+
21147760-T-G 18985874-T-G BY195762 YY+
21116474-C-T 18954588-C-T BY195753 YY+
20821631-A-G 18659745-A-G BY212629 P4_Gap +
6884883-A-G 7016842-A-G BY193145 YY+
17516641-C-A 15404761-C-A BY195097 YY+
14863634-C-G 12751700-C-G BY194319 YY+
22458154-A-G 20296268-A-G BY220057 DYZ19 +
14044906-A-AG 11924200-A-AG +
19519323-C-G 17407443-C-G BY195714 YY+
19051049-G-T 16939169-G-T BY195565 YY+
18950940-C-G 16839060-C-G BY195535 YY+
6962506-C-T 7094465-C-T BY14751 YY+
18084917-T-C 15973037-T-C BY195288 YY+
7793247-G-C 7925206-G-C BY193378 YY+
7671327-C-T 7803286-C-T BY193346 YY+
7962088-C-A 8094047-C-A BY193446 YY+
7978228-T-A 8110187-T-A BY193454 YY+
28062607-A-G 25916460-A-G S6371 P1_Y2 +
19284248-G-A 17172368-G-A CTS10139 YY+
24494706-C-T 22348559-C-T BY196711 +
8550619-C-T 8682578-C-T YY+
8543934-T-C 8675893-T-C BY193675 YY+
16204327-A-C 14092447-A-C BY194684 YY+
8888759-G-C 9020718-G-C BY193818 Y+
7962280-G-T 8094239-G-T BY193447 YY+
22600687-C-T 20438801-C-T YY+
22479330-C-A 20317444-C-A BY224220 DYZ19 +
17403653-G-A 15291773-G-A BY195054 YY+
22516060-T-C 20354174-T-C BY196212 Y+
22596312-C-T 20434426-C-T BY196250 YY+
22319146-C-T 20157260-C-T DYZ19 *
22316039-G-A 20154153-G-A DYZ19 *
13338987-T-C 11183311-T-C **
14622174-C-A 12510372-C-A **
14598899-G-T 12487099-G-T **
13338975-T-A 11183299-T-A **
13338985-C-T 11183309-C-T **
14579505-C-T 12467705-C-T **
13474818-G-GC 11319142-G-GC **
14252427-ATATT-A 12131721-ATATT-A **
13484692-C-A 11329016-C-A **
14069923-C-A 11949217-C-A **
13485861-G-C 11330185-G-C **
11646424-A-G **
13805274-A-C 11684568-A-C **
13988688-C-A 11867982-C-A **
14285863-A-C 12165157-A-C **
5359664-G-T 5491623-G-T **
13338972-A-T 11183296-A-T **
10673970-T-G **
10032115-C-G 10194506-C-G **
10651730-C-A **
10661821-T-G **
10662875-C-A **
10663572-C-A **
10673960-T-G **
10692394-A-C **
13338942-G-C 11183266-G-C **
10757159-C-A **
10761164-A-ATTTTT **
10834867-ACTCCG-A **
10915579-C-T **
10946607-T-G **
11028220-A-AGTTCC **
13280080-C-A 11124404-C-A **
14672091-A-C 12560157-A-C **
16830957-C-T 14719077-C-T **
14686198-T-C 12574264-T-C **
23028503-T-C 20866617-T-C **
19482092-T-C 17370212-T-C **
19622121-C-A 17510241-C-A P5_Prx **
20272013-G-T 18110127-G-T P5_Dst **
20384644-A-C 18222758-A-C P5_Dst **
20755607-G-T 18593721-G-T P4_Prx **
21477051-C-A 19315165-C-A **
21905333-TATG-T 19743447-TATG-T **
22203875-T-G 20041989-T-G **
22473603-C-T 20311717-C-T DYZ19 **
23142183-G-C 20980297-G-C **
19233089-C-A 17121209-C-A **
23517778-G-T 21355892-G-T **
23789634-G-A 21627748-G-A **
24071608-T-A 21925461-T-A P3_b1 **
26279339-G-T 24133192-G-T P1_Y1 **
27799431-A-C 25653284-A-C P1_Y2 **
27859474-A-C 25713327-A-C P1_Y2 **
27980183-TTTTTG-T 25834036-TTTTTG-T P1_Y2 **
28027344-A-C 25881197-A-C P1_Y2 **
28547327-G-T 26401180-G-T **
28648715-T-G 26502568-T-G **
19299861-C-A 17187981-C-A **
19044607-G-A 16932727-G-A **
15382832-C-A 13270952-C-A **
16624483-C-T 14512603-C-T **
15401870-T-TAA 13289990-T-TAA 9×A**
15658196-ATAT-A 13546316-ATAT-A **
15747492-C-A 13635612-C-A **
15793052-G-C 13681172-G-C **
16045298-A-G 13933418-A-G **
16269449-T-C 14157569-T-C **
16351908-C-A 14240028-C-A **
16352033-A-G 14240153-A-G **
16422377-A-C 14310497-A-C **
9926683-C-A 10089074-C-A **
18722978-G-A 16611098-G-A **
16942191-TC-T 14830311-TC-T **
17083071-C-A 14971191-C-A **
17128560-TAA-T 15016680-TAA-T **
17139642-C-A 15027762-C-A **
17192882-T-A 15081002-T-A **
17500257-C-T 15388377-C-T **
18395818-G-A 16283938-G-A P6_Gap **
18440451-T-A 16328571-T-A P6_Dst **
18554198-G-A 16442318-G-A **
18673835-C-A 16561955-C-A **
9965094-C-A 10127485-C-A **
9422927-T-A 9585318-T-A **
9810895-C-A 9973286-C-A **
14789413-A-G 12677484-A-G **
6944942-TC-T 7076901-TC-T **
28462269-G-T 26316122-G-T **
18440413-TACAC-T 16328533-TACAC-T P6_Dst 17×AC**
7142383-C-A 7274342-C-A **
21604140-C-A 19442254-C-A **
7107615-C-A 7239574-C-A **
2759589-C-T 2891548-C-T **
16779081-C-A 14667201-C-A **
14724464-C-A 12612532-C-A **
14736044-C-A 12624112-C-A **
15816505-C-A 13704625-C-A **
10753650-G-GCT **
22292710-G-A 20130824-G-A DYZ19 **
11663893-C-A **
10934898-C-A **
14225757-C-A 12105051-C-A **
21084331-A-G 18922445-A-G **
7197562-T-G 7329521-T-G **
27733744-G-C 25587597-G-C P1_Y2 **
10929363-G-T **
19847671-TC-T 17735791-TC-T P5_Prx **
9767822-A-G 9930213-A-G **
17703334-C-A 15591454-C-A **
14448305-C-A 12327578-C-A **
10753648-C-CCAT **
22040842-C-A 19878956-C-A **
10946627-T-C **
18036469-A-T 15924589-A-T A7946A7946 **
58985524-T-A 56839377-T-A **
10667265-T-G **
7317224-C-A 7449183-C-A **
18856257-C-A 16744377-C-A **
5073756-C-A 5205715-C-A **
21207073-C-A 19045187-C-A **
7362639-C-A 7494598-C-A **
16048950-C-A 13937070-C-A **
5865336-C-A 5997295-C-A **
10693409-C-A **
10808878-G-T **
13328731-C-A 11173055-C-A **
28027425-T-TA 25881278-T-TA P1_Y2 **
15558174-C-A 13446294-C-A **
18755068-C-A 16643188-C-A **
14491358-C-T 12379555-C-T **
6459693-C-A 6591652-C-A **
28390999-G-T 26244852-G-T P1_gr2 **
22854904-G-T 20693018-G-T **
10801698-A-ACCCGGAT **
13457741-C-CACAAGGATTG 11302065-C-CACAAGGATTG **
20726919-T-G 18565033-T-G P4_Prx **
2760066-C-A 2892025-C-A **
14513930-C-T 12402135-C-T **
6839679-T-G 6971638-T-G **
7208408-T-G 7340367-T-G **
5865422-A-T 5997381-A-T **
13946838-C-A 11826132-C-A **
6241124-G-GGCA 6373083-G-GGCA IR3_Dst **
6264530-C-A 6396489-C-A IR3_Dst **
6666399-C-A 6798358-C-A **
6712498-G-T 6844457-G-T **
6780569-G-T 6912528-G-T **
6790179-C-A 6922138-C-A **
6818958-T-G 6950917-T-G **
7179927-G-A 7311886-G-A **
7237310-C-A 7369269-C-A **
5237323-G-T 5369282-G-T **
7372176-G-A 7504135-G-A **
7374382-G-T 7506341-G-T **
7469825-T-G 7601784-T-G IR1_L **
7469851-T-G 7601810-T-G IR1_L **
7935807-C-A 8067766-C-A **
8237385-A-T 8369344-A-T **
8556137-G-A 8688096-G-A **
9079412-A-G 9241803-A-G **
9139875-C-A 9302266-C-A **
9735638-T-C 9898029-T-C IR3_Prx **
9753993-T-A 9916384-T-A **
5242462-G-A 5374421-G-A **
5949389-A-C 6081348-A-C **
28457-A-T **
3329235-C-A 3461194-C-A **
3285023-A-G 3416982-A-G **
3347650-C-A 3479609-C-A **
3923279-C-A 4055238-C-A **
3991891-A-G 4123850-A-G **
4138863-C-T 4270822-C-T **
10825417-C-A **
4165170-C-A 4297129-C-A **
4267536-T-C 4399495-T-C **
4365786-G-T 4497745-G-T **
4412927-G-T 4544886-G-T **
4460830-G-T 4592789-G-T **
4567755-A-T 4699714-A-T **
10761150-T-A **
4628231-T-G 4760190-T-G **
3088634-GA-G 3220593-GA-G 10×A**
4951040-TC-T 5082999-TC-T **
13704946-CGAA-C,CAAC 11549270-CGAA-C,CAAC ***
15401851-C-A 13289971-C-A ***
18185019-G-A 16073139-G-A ***
16934-G-T ***
7474374-AAGAGAGAG-A,AAGAG 7606333-AAGAGAGAG-A,AAGAG IR1_L 21×AG***
11014346-C-T ***
17728834-A-G 15616954-A-G ***
10789331-A-AGAAGG ***
7426792-C-A 7558751-C-A ***
3606267-C-A 3738226-C-A ***
15969714-C-A 13857834-C-A ***
10991230-C-T ***
7203884-T-C 7335843-T-C ***
14517451-GA-G 12405652-GA-G ***
22177665-T-C 20015779-T-C ***
23824942-C-A 21663056-C-A ***
13817969-A-G 11697263-A-G ***
22893304-CCTTTCTTT-C,CCTTT 20731418-CCTTTCTTT-C,CCTTT 17×CTTT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 344707948931277515047659899
Used in age calculations948931277515047659899
Counts of SNPs2727
Variant counts last updated 2019-05-11 10:14:44.



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