Owsley
BigY3: 39877, BigY2: 39877MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY3 39877 | BigY2 39877 |
---|---|---|---|---|---|---|---|---|---|
20131040-G-GT | 18019160-G-GT | P5_Dst | 9×T | A* | |||||
13449554-C-T | 11293878-C-T | A* | |||||||
19922611-G-A | 17810731-G-A | P5_Prx | A* | A* | |||||
20486772-G-GA | 18324886-G-GA | P5_Dst | 11×A | A* | |||||
56831347-G-A | A* | ||||||||
13451613-C-A | 11295937-C-A | A* | |||||||
18443692-T-C | 16331812-T-C | P6_Dst | A* | ||||||
20257165-C-T | 18095279-C-T | P5_Dst | A* | ||||||
24260697-G-A | 22114550-G-A | P3_b1 | A* | ||||||
26218660-G-A | 24072513-G-A | P1_Y1 | A* | ||||||
28816712-G-C | 26670565-G-C | A* | |||||||
3545040-G-C | 3676999-G-C | BY57690 | BY57690 | + | ** | ||||
19268974-G-GA | 17157094-G-GA | 9×A | ** | + | |||||
7232755-T-A | 7364714-T-A | FT64984 | Y | Y | + | ** | |||
8643824-C-T | 8775783-C-T | BY190213 | Y | Y | + | + | |||
21399368-A-G | 19237482-A-G | BY191708 | Y | Y | + | + | |||
5057688-T-G | 5189647-T-G | FT64773 | + | ||||||
6603369-C-T | 6735328-C-T | * | |||||||
22300697-C-A | 20138811-C-A | S701 | DYZ19 | ** | |||||
13466335-A-T | 11310659-A-T | ** | |||||||
24465957-T-C | 22319810-T-C | PF1296 | ** | ||||||
22300704-T-G | 20138818-T-G | BY216876 | DYZ19 | ** | |||||
21182494-C-A | 19020608-C-A | ** | |||||||
10789349-C-G | ** | ||||||||
13195841-C-A | 11040165-C-A | ** | |||||||
7935851-C-A | 8067810-C-A | ** | |||||||
10669460-A-AC | ** | ||||||||
10889273-C-T | ** | ||||||||
13239660-A-G | 11083984-A-G | ** | |||||||
10985202-T-C | ** | ||||||||
21624503-C-A | 19462617-C-A | ** | |||||||
5359637-G-T | 5491596-G-T | ** | |||||||
10767907-A-ACG | ** | ||||||||
20440325-C-A | 18278439-C-A | P5_Dst | ** | ||||||
13229450-C-A | 11073774-C-A | ** | |||||||
7167776-C-A | 7299735-C-A | ** | |||||||
14730313-C-T | 12618381-C-T | ** | |||||||
14730314-A-G | 12618382-A-G | ** | |||||||
21491104-G-T | 19329218-G-T | ** | |||||||
21261853-G-A | 19099967-G-A | ** | |||||||
15259718-C-A | 13147802-C-A | ** | |||||||
10793236-A-ACTAAC | ** | ||||||||
14938274-A-G | 12826349-A-G | ** | |||||||
23138613-C-A | 20976727-C-A | ** | |||||||
21840004-C-A | 19678118-C-A | ** | |||||||
15863699-C-A | 13751819-C-A | ** | |||||||
19733428-G-T | 17621548-G-T | P5_Prx | ** | ||||||
21839987-C-A | 19678101-C-A | ** | |||||||
7255025-C-A | 7386984-C-A | ** | |||||||
23305572-C-A | 21143686-C-A | ** | |||||||
10685740-T-C | ** | ||||||||
18611617-C-A | 16499737-C-A | ** | |||||||
18008665-T-G | 15896785-T-G | P7_Dst | ** | ||||||
13446746-C-A | 11291070-C-A | ** | |||||||
27762742-G-T | 25616595-G-T | P1_Y2 | ** | ||||||
21146410-C-A | 18984524-C-A | ** | |||||||
7695681-C-A | 7827640-C-A | ** | |||||||
9444858-G-T | 9607249-G-T | ** | |||||||
17859471-C-A | 15747591-C-A | ** | |||||||
10673847-C-A | ** | ||||||||
10789409-C-G | ** | ||||||||
16942157-C-A | 14830277-C-A | ** | |||||||
23446256-C-A | 21284370-C-A | ** | |||||||
10789359-C-G | ** | ||||||||
17871662-C-A | 15759782-C-A | ** | |||||||
4920064-C-A | 5052023-C-A | ** | |||||||
2724555-C-A | 2856514-C-A | ** | |||||||
20352379-C-A | 18190493-C-A | P5_Dst | ** | ||||||
6765602-C-A | 6897561-C-A | ** | |||||||
9090732-T-C | 9253123-T-C | ** | |||||||
28479202-G-A | 26333055-G-A | ** | |||||||
10889295-T-G | ** | ||||||||
6298488-T-C | 6430447-T-C | IR3_Dst | ** | ||||||
6298490-A-C | 6430449-A-C | IR3_Dst | 10×AC | ** | |||||
22300702-T-C | 20138816-T-C | DYZ19 | ** | ||||||
2948556-C-A | 3080515-C-A | ** | |||||||
14345149-C-A | 12224444-C-A | ** | |||||||
20440362-T-C | 18278476-T-C | P5_Dst | ** | ||||||
19112659-C-A | 17000779-C-A | ** | |||||||
17317315-C-A | 15205435-C-A | ** | |||||||
10997102-A-ATCCAC | ** | ||||||||
15205992-A-C | 13094078-A-C | ** | |||||||
26379231-C-A | 24233084-C-A | P1_Y1 | ** | ||||||
15430639-A-C | 13318759-A-C | ** | |||||||
4016907-C-A | 4148866-C-A | ** | |||||||
18660208-C-A | 16548328-C-A | ** | |||||||
27417757-A-T | 25271610-A-T | P1_g3 | ** | ||||||
8975013-G-T | 9137404-G-T | ** | |||||||
7255047-C-A | 7387006-C-A | ** | |||||||
7853174-T-C | 7985133-T-C | ** | |||||||
10823502-C-A | ** | ||||||||
10779175-C-A | ** | ||||||||
21182524-C-T | 19020638-C-T | ** | |||||||
8498337-GC-G | 8630296-GC-G | ** | |||||||
15034816-C-A | 12922904-C-A | ** | |||||||
9940428-C-A | 10102819-C-A | ** | |||||||
7334769-C-A | 7466728-C-A | ** | |||||||
10989370-C-G | ** | ||||||||
28529913-C-A | 26383766-C-A | ** | |||||||
16757173-A-C | 14645293-A-C | ** | |||||||
28601084-A-C | 26454937-A-C | ** | |||||||
15388027-C-A | 13276147-C-A | ** | |||||||
17042717-C-A | 14930837-C-A | ** | |||||||
10889269-A-G | ** | ||||||||
10889277-C-G | ** | ||||||||
20739858-C-A | 18577972-C-A | P4_Prx | ** | ||||||
13233078-C-A | 11077402-C-A | ** | |||||||
17217566-A-G | 15105686-A-G | ** | |||||||
17217568-T-G | 15105688-T-G | ** | |||||||
56849368-G-T | ** | ||||||||
10669434-CA-C | ** | ||||||||
7582005-C-G | 7713964-C-G | ** | |||||||
2755494-C-A | 2887453-C-A | ** | |||||||
2864334-C-A | 2996293-C-A | ** | |||||||
4231909-C-A | 4363868-C-A | ** | |||||||
4270927-A-G | 4402886-A-G | ** | |||||||
4339350-C-A | 4471309-C-A | ** | |||||||
4437888-C-A | 4569847-C-A | ** | |||||||
4712430-G-T | 4844389-G-T | ** | |||||||
4889384-C-A | 5021343-C-A | ** | |||||||
5569305-C-A | 5701264-C-A | ** | |||||||
5658579-C-A | 5790538-C-A | ** | |||||||
5999555-G-A | 6131514-G-A | ** | |||||||
6096785-G-A | 6228744-G-A | FT271744 | ** | ||||||
6177523-G-T | 6309482-G-T | IR3_Dst | ** | ||||||
6506548-T-C | 6638507-T-C | ** | |||||||
6675973-G-T | 6807932-G-T | ** | |||||||
6697444-C-A | 6829403-C-A | ** | |||||||
6705430-C-A | 6837389-C-A | ** | |||||||
6822613-C-A | 6954572-C-A | FGC35793 | ** | ||||||
6888481-G-T | 7020440-G-T | ** | |||||||
7073118-C-A | 7205077-C-A | ** | |||||||
7084153-C-CAA | 7216112-C-CAA | 12×A | ** | ||||||
7088435-TA-T | 7220394-TA-T | ** | |||||||
7164163-A-C | 7296122-A-C | ** | |||||||
7208328-G-A | 7340287-G-A | ** | |||||||
7358182-G-C | 7490141-G-C | ** | |||||||
7420394-C-A | 7552353-C-A | ** | |||||||
7581997-T-C | 7713956-T-C | ** | |||||||
7582009-A-T | 7713968-A-T | ** | |||||||
7717950-C-A | 7849909-C-A | ** | |||||||
8000163-C-A | 8132122-C-A | ** | |||||||
8000236-C-A | 8132195-C-A | ** | |||||||
8398858-G-T | 8530817-G-T | ** | |||||||
8501180-G-T | 8633139-G-T | ** | |||||||
9040130-C-T | 9202521-C-T | ** | |||||||
9090729-T-A | 9253120-T-A | ** | |||||||
9441737-G-A | 9604128-G-A | ** | |||||||
9599537-A-T | 9761928-A-T | IR3_Prx | ** | ||||||
10656942-C-A | ** | ||||||||
10669436-T-TC | ** | ||||||||
10749616-C-A | ** | ||||||||
10775248-C-A | ** | ||||||||
10789350-C-CA | ** | ||||||||
10789352-T-TCGAGTTGAA | ** | ||||||||
10789395-C-CGGAAG | ** | ||||||||
10824736-T-C | ** | ||||||||
10828635-C-A | ** | ||||||||
10841987-T-C | ** | ||||||||
10893718-C-G | ** | ||||||||
10935592-C-CTTCT | ** | ||||||||
10985178-A-GAACTG | ** | ||||||||
10989371-C-G | ** | ||||||||
13466334-C-G | 11310658-C-G | ** | |||||||
13487633-C-T | 11331957-C-T | ** | |||||||
13488560-CG-C | 11332884-CG-C | ** | |||||||
13488567-A-G | 11332891-A-G | ** | |||||||
13710074-G-C | 11554398-G-C | ** | |||||||
11655847-C-A | ** | ||||||||
11655865-G-T | BY89872 | ** | |||||||
11668613-T-G | ** | ||||||||
11671136-G-T | ** | ||||||||
13942473-C-A | 11821767-C-A | ** | |||||||
13960936-C-T | 11840230-C-T | ** | |||||||
13997081-C-A | 11876375-C-A | ** | |||||||
14009775-T-A | 11889069-T-A | ** | |||||||
14103088-C-A | 11982382-C-A | ** | |||||||
14188022-C-A | 12067316-C-A | ** | |||||||
14229697-T-A | 12108991-T-A | ** | |||||||
14270421-C-A | 12149715-C-A | ** | |||||||
14321319-A-C | 12200613-A-C | ** | |||||||
14402380-A-G | 12281677-A-G | ** | |||||||
14515544-T-A | 12403745-T-A | ** | |||||||
14528272-C-A | 12416473-C-A | ** | |||||||
14730295-G-A | 12618363-G-A | ** | |||||||
14734188-C-A | 12622256-C-A | FT21595 | ** | ||||||
14764486-T-G | 12652555-T-G | ** | |||||||
14802703-T-C | 12690774-T-C | ** | |||||||
14863895-C-A | 12751961-C-A | ** | |||||||
14938278-T-C | 12826353-T-C | ** | |||||||
14938280-C-G | 12826355-C-G | ** | |||||||
15222859-C-A | 13110945-C-A | ** | |||||||
15271505-T-A | 13159594-T-A | ** | |||||||
15352916-T-C | 13241035-T-C | ** | |||||||
15536274-A-C | 13424394-A-C | ** | |||||||
15542711-C-A | 13430831-C-A | ** | |||||||
15558904-T-C | 13447024-T-C | ** | |||||||
15742528-C-A | 13630648-C-A | ** | |||||||
15744670-C-A | 13632790-C-A | ** | |||||||
15861480-A-G | 13749600-A-G | FT336435 | ** | ||||||
15980181-C-A | 13868301-C-A | ** | |||||||
16228158-A-C | 14116278-A-C | ** | |||||||
16305848-C-T | 14193968-C-T | ** | |||||||
16305906-C-T | 14194026-C-T | ** | |||||||
16312543-C-A | 14200663-C-A | ** | |||||||
16360665-C-A | 14248785-C-A | ** | |||||||
16520817-C-T | 14408937-C-T | ** | |||||||
16703648-C-T | 14591768-C-T | ** | |||||||
16757190-A-CTACAG | 14645310-A-CTACAG | ** | |||||||
16769730-C-A | 14657850-C-A | FT5918 | ** | ||||||
16827650-C-A | 14715770-C-A | ** | |||||||
17078597-C-A | 14966717-C-A | ** | |||||||
17078976-A-G | 14967096-A-G | ** | |||||||
17092516-C-A | 14980636-C-A | ** | |||||||
17101675-C-A | 14989795-C-A | ** | |||||||
17103272-T-G | 14991392-T-G | ** | |||||||
17195837-C-A | 15083957-C-A | ** | |||||||
17195871-C-A | 15083991-C-A | ** | |||||||
17278791-C-A | 15166911-C-A | ** | |||||||
17405824-C-A | 15293944-C-A | ** | |||||||
17414758-AAT-A | 15302878-AAT-A | ** | |||||||
17446878-C-T | 15334998-C-T | ** | |||||||
17506581-C-A | 15394701-C-A | ** | |||||||
17596623-C-A | 15484743-C-A | ** | |||||||
17596631-C-A | 15484751-C-A | ** | |||||||
17596816-C-A | 15484936-C-A | ** | |||||||
17634498-G-T | 15522618-G-T | ** | |||||||
17770791-G-A | 15658911-G-A | ** | |||||||
17781514-T-G | 15669634-T-G | ** | |||||||
17842253-C-A | 15730373-C-A | ** | |||||||
18019507-C-A | 15907627-C-A | ** | |||||||
18084176-C-A | 15972296-C-A | ** | |||||||
18094395-C-A | 15982515-C-A | ** | |||||||
18206872-C-A | 16094992-C-A | ** | |||||||
18226105-C-A | 16114225-C-A | ** | |||||||
18421523-C-A | 16309643-C-A | P6_Gap | ** | ||||||
18556588-A-G | 16444708-A-G | ** | |||||||
18724658-C-A | 16612778-C-A | BY50497 | ** | ||||||
18746907-C-A | 16635027-C-A | ** | |||||||
18759034-C-A | 16647154-C-A | ** | |||||||
18859158-C-A | 16747278-C-A | ** | |||||||
18900643-A-C | 16788763-A-C | ** | |||||||
18986323-C-A | 16874443-C-A | ** | |||||||
19067939-G-A | 16956059-G-A | FT188396 | ** | ||||||
19073740-G-T | 16961860-G-T | ** | |||||||
19113722-CT-C | 17001842-CT-C | ** | |||||||
19422839-C-A | 17310959-C-A | ** | |||||||
19472490-A-T | 17360610-A-T | ** | |||||||
19481053-C-A | 17369173-C-A | ** | |||||||
19505019-C-A | 17393139-C-A | ** | |||||||
19548308-C-A | 17436428-C-A | ** | |||||||
21105409-C-A | 18943523-C-A | ** | |||||||
21141646-C-A | 18979760-C-A | ** | |||||||
21167073-C-A | 19005187-C-A | ** | |||||||
21182500-A-C | 19020614-A-C | ** | |||||||
21182538-C-A | 19020652-C-A | ** | |||||||
21182545-T-C | 19020659-T-C | ** | |||||||
21295689-C-A | 19133803-C-A | ** | |||||||
21369939-C-A | 19208053-C-A | ** | |||||||
21486851-C-A | 19324965-C-A | ** | |||||||
21608018-C-T | 19446132-C-T | ** | |||||||
21663205-G-C | 19501319-G-C | ** | |||||||
21717851-C-A | 19555965-C-A | ** | |||||||
21862923-C-A | 19701037-C-A | ** | |||||||
21888452-C-A | 19726566-C-A | ** | |||||||
21888580-C-A | 19726694-C-A | ** | |||||||
22011861-C-A | 19849975-C-A | ** | |||||||
22019673-A-G | 19857787-A-G | ** | |||||||
22035063-G-T | 19873177-G-T | ** | |||||||
22076316-C-A | 19914430-C-A | ** | |||||||
22186751-C-A | 20024865-C-A | ** | |||||||
22204770-A-G | 20042884-A-G | ** | |||||||
22210661-C-A | 20048775-C-A | ** | |||||||
22300701-G-A | 20138815-G-A | DYZ19 | ** | ||||||
22590794-T-C | 20428908-T-C | ** | |||||||
22722581-C-A | 20560695-C-A | ** | |||||||
22727209-C-A | 20565323-C-A | ** | |||||||
22745855-T-C | 20583969-T-C | ** | |||||||
22746992-G-T | 20585106-G-T | ** | |||||||
22810694-G-A | 20648808-G-A | ** | |||||||
22920629-TTG-T | 20758743-TTG-T | ** | |||||||
22996752-C-A | 20834866-C-A | ** | |||||||
23281374-T-C | 21119488-T-C | ** | |||||||
23387853-C-A | 21225967-C-A | ** | |||||||
23413869-C-A | 21251983-C-A | ** | |||||||
23471336-C-A | 21309450-C-A | ** | |||||||
23511671-C-A | 21349785-C-A | ** | |||||||
23623615-C-A | 21461729-C-A | ** | |||||||
23793317-C-A | 21631431-C-A | ** | |||||||
23808329-C-A | 21646443-C-A | ** | |||||||
23827668-C-T | 21665782-C-T | ** | |||||||
24391813-C-A | 22245666-C-A | ** | |||||||
24475000-G-T | 22328853-G-T | ** | |||||||
24905082-C-A | 22758935-C-A | g1 | ** | ||||||
26025282-G-A | 23879135-G-A | BY226573 | P1_Y1 | ** | |||||
26025285-T-G | 23879138-T-G | P1_Y1 | ** | ||||||
28081884-A-ACG | 25935737-A-ACG | P1_Y2 | ** | ||||||
28478429-C-A | 26332282-C-A | ** | |||||||
28497384-C-A | 26351237-C-A | ** | |||||||
28505143-C-A | 26358996-C-A | ** | |||||||
28815178-GGAGTA-G | 26669031-GGAGTA-G | ** | |||||||
28815194-T-C | 26669047-T-C | ** | |||||||
56833358-C-A | ** | ||||||||
56835652-C-CCATTA | ** | ||||||||
56872968-C-T | ** | ||||||||
3540148-A-G | 3672107-A-G | ** | |||||||
4950036-G-C | 5081995-G-C | ** | |||||||
5701400-G-T | 5833359-G-T | ** | |||||||
9557066-T-TGA | 9719457-T-TGA | IR3_Prx | ** | ||||||
13279998-C-T | 11124322-C-T | 26×A | ** | ||||||
13467551-T-C | 11311875-T-C | ** | |||||||
13529870-T-C | 11374194-T-C | ** | |||||||
13873391-C-T | 11752685-C-T | ** | |||||||
14302964-G-A | 12182258-G-A | ** | |||||||
16323001-G-A | 14211121-G-A | ** | |||||||
17227182-A-G | 15115302-A-G | ** | |||||||
17454790-G-A | 15342910-G-A | ** | |||||||
17454793-G-C | 15342913-G-C | ** | |||||||
18017130-TATATATATATATATATATATATAC-T | 15905250-TATATATATATATATATATATATAC-T | ** | |||||||
18325681-G-C | 16213801-G-C | P6_Prx | ** | ||||||
18577474-G-A | 16465594-G-A | ** | |||||||
18702073-T-A | 16590193-T-A | ** | |||||||
18702074-AT-A | 16590194-AT-A | ** | |||||||
18844948-C-G | 16733068-C-G | ** | |||||||
19678748-C-T | 17566868-C-T | P5_Prx | ** | ||||||
20962190-C-T | 18800304-C-T | P4_Dst | ** | ||||||
22777903-C-T | 20616017-C-T | ** | |||||||
25108840-C-T | 22962693-C-T | g1 | ** | ||||||
25988833-G-T | 23842686-G-T | P1_Y1 | ** | ||||||
15964912-G-T | 13853032-G-T | F3934 | 9×T | *** | |||||
22446877-G-A | 20284991-G-A | BY45474 | DYZ19 | *** | |||||
13672394-CAACGGAACGG-C | 11516718-CAACGGAACGG-C | 5×AACGG | *** | *** | |||||
19517607-C-A | 17405727-C-A | *** | |||||||
16308486-CTTTTTTTT-C | 14196606-CTTTTTTTT-C | 25×T | *** | ||||||
10841094-ATCCAT-A | *** | ||||||||
16581436-TAA-T,TAAA | 14469556-TAA-T,TAAA | 15×A | *** | ||||||
7960965-A-AT | 8092924-A-AT | 10×T | *** | ||||||
4770390-G-T | 4902349-G-T | *** | |||||||
13194212-C-A | 11038536-C-A | *** | |||||||
28553992-CAAAAAAA-C | 26407845-CAAAAAAA-C | 28×A | *** | ||||||
10999868-C-G | *** | ||||||||
22834193-C-A | 20672307-C-A | *** | |||||||
23482869-C-A | 21320983-C-A | *** | |||||||
9907666-G-T | 10070057-G-T | *** | |||||||
18267377-AT-A | 16155497-AT-A | 10×T | *** | ||||||
16411476-C-A | 14299596-C-A | *** | |||||||
22825114-C-A | 20663228-C-A | *** | |||||||
13202553-C-A | 11046877-C-A | *** | |||||||
4867594-G-C | 4999553-G-C | *** | |||||||
7142016-C-T | 7273975-C-T | *** | |||||||
6882731-C-A | 7014690-C-A | *** | |||||||
6786369-T-G | 6918328-T-G | *** | |||||||
8217692-C-A | 8349651-C-A | *** | |||||||
22859809-T-G | 20697923-T-G | *** | |||||||
7868224-C-A | 8000183-C-A | *** | |||||||
21139197-C-A | 18977311-C-A | *** | |||||||
8288897-C-A | 8420856-C-A | *** | |||||||
15336707-CAAAAAA-C | 13224825-CAAAAAA-C | 20×A | *** | ||||||
56707178-A-G | *** | ||||||||
10989150-T-C | *** | ||||||||
6428053-C-A | 6560012-C-A | *** | |||||||
17405587-C-A | 15293707-C-A | *** | |||||||
13296143-C-A | 11140467-C-A | *** | |||||||
15746726-C-A | 13634846-C-A | *** | |||||||
21884558-T-C | 19722672-T-C | *** | |||||||
13489901-C-A | 11334225-C-A | *** | |||||||
9774437-C-CT | 9936828-C-CT | *** | |||||||
16029951-C-A | 13918071-C-A | *** | |||||||
14195817-CAA-C,CA | 12075111-CAA-C,CA | 14×A | *** | ||||||
21484595-TAA-T | 19322709-TAA-T | 11×A | *** | ||||||
14723775-C-A | 12611843-C-A | *** | |||||||
13704975-TG-T | 11549299-TG-T | *** | |||||||
21592634-TA-T,TAA | 19430748-TA-T,TAA | 14×A | *** | ||||||
10999945-A-G | *** | ||||||||
23499575-CAA-C | 21337689-CAA-C | 12×A | *** | ||||||
17203327-CTT-C,CT | 15091447-CTT-C,CT | 21×T | *** | ||||||
2821530-C-A | 2953489-C-A | *** | |||||||
3284224-C-A | 3416183-C-A | *** | |||||||
4374639-C-A | 4506598-C-A | *** | |||||||
5577132-C-A | 5709091-C-A | *** | |||||||
7244114-G-A | 7376073-G-A | *** | |||||||
7354433-C-A | 7486392-C-A | *** | |||||||
7651354-G-A | 7783313-G-A | *** | |||||||
7975063-C-A | 8107022-C-A | *** | |||||||
8047037-C-T | 8178996-C-T | BY199227 | *** | ||||||
8214528-C-A | 8346487-C-A | *** | |||||||
8771333-C-A | 8903292-C-A | *** | |||||||
10003772-T-C | 10166163-T-C | *** | |||||||
13202547-C-A | 11046871-C-A | *** | |||||||
13254291-G-A | 11098615-G-A | *** | |||||||
13258951-C-T | 11103275-C-T | *** | |||||||
13454196-G-A | 11298520-G-A | *** | |||||||
13454199-A-C | 11298523-A-C | *** | |||||||
13454234-T-AACGAA | 11298558-T-AACGAA | *** | |||||||
13471624-G-A | 11315948-G-A | BY85876 | *** | ||||||
14080431-C-A | 11959725-C-A | *** | |||||||
14147216-C-T | 12026510-C-T | *** | |||||||
14471469-CTTT-C,CTTTT | 12350738-CTTT-C,CTTTT | 19×T | *** | ||||||
14783792-C-A | 12671862-C-A | *** | |||||||
14835177-C-A | 12723244-C-A | *** | |||||||
15200723-C-A | 13088809-C-A | *** | |||||||
15354927-C-A | 13243046-C-A | *** | |||||||
15558894-G-T | 13447014-G-T | *** | |||||||
15761390-C-A | 13649510-C-A | *** | |||||||
15863239-C-A | 13751359-C-A | *** | |||||||
16223473-C-A | 14111593-C-A | *** | |||||||
16592511-C-A | 14480631-C-A | *** | |||||||
16864329-C-A | 14752449-C-A | *** | |||||||
16960524-C-A | 14848644-C-A | *** | |||||||
16968483-A-G | 14856603-A-G | *** | |||||||
17037461-T-C | 14925581-T-C | FT337177 | *** | ||||||
17090440-C-A | 14978560-C-A | *** | |||||||
17289486-C-A | 15177606-C-A | *** | |||||||
17514874-G-A | 15402994-G-A | *** | |||||||
17515584-TA-T,TAAAA | 15403704-TA-T,TAAAA | 17×A | *** | ||||||
17799276-C-A | 15687396-C-A | *** | |||||||
17852415-C-A | 15740535-C-A | *** | |||||||
18085717-G-T | 15973837-G-T | *** | |||||||
18616828-C-A | 16504948-C-A | *** | |||||||
18740172-C-A | 16628292-C-A | BY123546 | *** | ||||||
18841056-C-A | 16729176-C-A | *** | |||||||
18887221-G-A | 16775341-G-A | *** | |||||||
19422895-C-A | 17311015-C-A | *** | |||||||
19460817-C-A | 17348937-C-A | *** | |||||||
19511513-C-A | 17399633-C-A | *** | |||||||
19533004-C-A | 17421124-C-A | *** | |||||||
21091587-C-A | 18929701-C-A | *** | |||||||
21094154-C-A | 18932268-C-A | *** | |||||||
21106153-G-A | 18944267-G-A | *** | |||||||
21328086-C-A | 19166200-C-A | *** | |||||||
21340538-G-A | 19178652-G-A | *** | |||||||
21534593-C-A | 19372707-C-A | *** | |||||||
21694718-C-A | 19532832-C-A | *** | |||||||
21818643-C-A | 19656757-C-A | *** | |||||||
21923276-T-C | 19761390-T-C | *** | |||||||
21963422-C-A | 19801536-C-A | *** | |||||||
22099897-C-A | 19938011-C-A | *** | |||||||
22156766-C-A | 19994880-C-A | *** | |||||||
22184824-T-C | 20022938-T-C | *** | |||||||
22659075-C-A | 20497189-C-A | *** | |||||||
22716413-C-A | 20554527-C-A | *** | |||||||
22752918-C-T | 20591032-C-T | *** | |||||||
22934309-C-A | 20772423-C-A | *** | |||||||
23003514-C-A | 20841628-C-A | *** | |||||||
23280656-C-A | 21118770-C-A | *** | |||||||
23394788-C-A | 21232902-C-A | *** | |||||||
24108457-G-T | 21962310-G-T | P3_b1 | *** | ||||||
24873352-C-A | 22727205-C-A | g1 | *** | ||||||
28376017-A-G | 26229870-A-G | P1_gr2 | *** | ||||||
28601031-G-A | 26454884-G-A | *** | |||||||
28601033-C-A | 26454886-C-A | *** | |||||||
56830470-G-T | *** | ||||||||
5701695-G-T | 5833654-G-T | *** | |||||||
3363318-CTTT-C | 3495277-CTTT-C | 15×T | *** | ||||||
21623520-AACAC-A,AAC | 19461634-AACAC-A,AAC | 19×AC | *** | ||||||
3152178-T-C | 3284137-T-C | *** | |||||||
6767651-G-T | 6899610-G-T | *** | |||||||
7150401-A-T | 7282360-A-T | 13×T | *** | ||||||
7233135-C-A | 7365094-C-A | *** | |||||||
8741809-T-C | 8873768-T-C | *** | |||||||
9428052-A-T | 9590443-A-T | *** | |||||||
9909968-CT-C | 10072359-CT-C | *** | |||||||
13248761-G-A | 11093085-G-A | *** | |||||||
13345910-G-T | 11190234-G-T | *** | |||||||
14135630-G-C | 12014924-G-C | *** | |||||||
15324319-CTTTTTTTTTTTTTTTTTTT-C | 13212437-CTTTTTTTTTTTTTTTTTTT-C | 25×T | *** | ||||||
17482284-A-T | 15370404-A-T | *** | |||||||
17669700-CATAT-C,CAT | 15557820-CATAT-C,CAT | 15×AT | *** | ||||||
17825799-T-C | 15713919-T-C | *** | |||||||
21348777-G-C | 19186891-G-C | *** | |||||||
21351901-C-T | 19190015-C-T | *** | |||||||
22446875-T-A | 20284989-T-A | DYZ19 | *** | ||||||
23087394-C-G | 20925508-C-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.