Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > FGC6540 > FGC6562 > FGC70067 > FGC6545 > FGC6547

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
81092
10872169-T-C A+
13688840-C-G 11533164-C-G A*
13712823-G-A 11557147-G-A A*
13451455-A-C 11295779-A-C A*
24247631-G-T 22101484-G-T P3_b1 A*
28792550-T-A 26646403-T-A A*
13450460-A-G 11294784-A-G A*
10844619-A-T A*
22469561-T-A 20307675-T-A DYZ19 A*
13695142-G-T 11539466-G-T A*
28805191-G-A 26659044-G-A A*
13450457-T-A 11294781-T-A A*
20076293-G-A 17964413-G-A P5_Dst A*
28792235-C-G 26646088-C-G A*
13204397-A-G 11048721-A-G A*
13204394-G-A 11048718-G-A A*
13688854-T-A 11533178-T-A A*
13447661-C-A 11291985-C-A A*
13687943-A-T 11532267-A-T A*
13313326-G-C 11157650-G-C A*
13450312-T-A 11294636-T-A A*
13451237-C-A 11295561-C-A A*
28817951-T-C 26671804-T-C A*
13451875-G-GTCCATTCCATTCCAT 11296199-G-GTCCATTCCATTCCAT 4×TCCATA*
13688832-A-C 11533156-A-C A*
13692943-T-A 11537267-T-A A*
28793478-A-ATGGAG 26647331-A-ATGGAG A*
10757182-T-A A*
28815523-A-G 26669376-A-G A*
13712821-A-T 11557145-A-T A*
13447585-A-T 11291909-A-T A*
13450461-T-C 11294785-T-C A*
13450465-A-G 11294789-A-G A*
26218401-T-C 24072254-T-C P1_Y1 A*
23180029-A-C 21018143-A-C YA*
13447656-C-A 11291980-C-A A*
26015325-C-CAT 23869178-C-CAT P1_Y1 A*
13452591-C-T 11296915-C-T A*
13204375-T-G 11048699-T-G A*
28816494-G-A 26670347-G-A A*
13718856-G-A 11563180-G-A A*
13718806-G-A 11563130-G-A A*
13688867-A-C 11533191-A-C A*
28809813-T-A 26663666-T-A A*
13869694-C-T 11748988-C-T A*
20629832-G-GT 18467946-G-GT P4_Prx 9×TA*
13204361-A-G 11048685-A-G A*
20620621-C-CA 18458735-C-CA P4_Prx 9×AA*
13204376-A-G 11048700-A-G A*
18455834-G-GTC 16343954-G-GTC P6_Dst A*
28815329-T-G 26669182-T-G 4×AATGGA*
6265150-C-A 6397109-C-A IR3_Dst A*
28807090-T-G 26660943-T-G A*
6332659-A-AAC 6464618-A-AAC IR3_Dst 8×ACA*
23124367-T-G 20962481-T-G CTS11468 FGC49 YYA*
16265100-A-C 14153220-A-C BY190901 YY+
14400832-T-C 12280129-T-C YY+
13709481-G-T 11553805-G-T BY48412 +
28770545-G-T 26624398-G-T BY227189 Y+
7301883-T-A 7433842-T-A BY189837 YY+
19059044-T-TA 16947164-T-TA +
7734925-C-CA 7866884-C-CA 8×A+
13857542-G-GATGGA 11736836-G-GATGGA 9×ATGGA*
10061238-T-A 10223629-T-A **
6310853-GCACACA-G 6442812-GCACACA-G IR3_Dst 17×CA**
9227828-C-T 9390219-C-T **
10840734-C-T **
10840748-A-C **
10870114-T-G **
10878853-C-A **
8968449-AT-A 9130840-AT-A **
10879496-T-C **
10879496-T-TA **
10921827-C-A **
10945278-T-A **
10931104-T-A **
10840688-A-C **
6445323-G-T 6577282-G-T **
9108219-C-A **
8172685-GC-G 8304644-GC-G **
10950321-T-C **
10952380-C-A **
7935687-A-T 8067646-A-T **
5447083-G-A 5579042-G-A **
7039270-A-C 7171229-A-C **
10956834-T-G **
10840689-C-T **
9437355-A-G 9599746-A-G **
10840272-C-A **
7039307-T-G 7171266-T-G **
10061269-TG-T 10223660-TG-T **
10061275-C-T 10223666-C-T **
10056467-G-T 10218858-G-T **
10999349-C-T **
6244685-G-T 6376644-G-T IR3_Dst **
10056466-C-G 10218857-C-G **
10056412-T-G 10218803-T-G **
10056404-T-A 10218795-T-A **
6130762-C-A 6262721-C-A **
5816458-A-G 5948417-A-G **
10056402-T-C 10218793-T-C **
10061239-A-G 10223630-A-G **
9656791-T-A 9819182-T-A IR3_Prx **
10655722-C-A **
10772006-C-A **
10793933-TTCCAC-T **
9622589-A-AT 9784980-A-AT IR3_Prx **
5527399-C-A 5659358-C-A **
10807051-TCC-T **
9610036-T-TTG 9772427-T-TTG IR3_Prx **
10807055-TTCC-T **
10808896-C-A **
10811031-A-G **
10998597-C-T **
15424699-G-T 13312819-G-T **
11007201-T-C **
21269204-T-C 19107318-T-C **
23355583-C-A 21193697-C-A **
23291307-C-A 21129421-C-A **
23276589-G-T 21114703-G-T **
22774980-G-A 20613094-G-A **
22134112-G-T 19972226-G-T **
21455410-C-A 19293524-C-A **
21245360-G-T 19083474-G-T **
23997115-A-C 21850968-A-C **
21221278-C-A 19059392-C-A **
20869257-A-T 18707371-A-T P4_Dst **
20673815-T-TA 18511929-T-TA P4_Prx **
20522399-T-TAAAC 18360513-T-TAAAC P5_Dst **
20490875-A-T 18328989-A-T P5_Dst **
20481224-T-TC 18319338-T-TC P5_Dst **
23720449-G-AT 21558563-G-AT 8×A**
24017408-G-GTA 21871261-G-GTA 12×T**
19999931-A-T 17888051-A-T P5_Prx **
27447501-A-AGT 25301354-A-AGT P1_Y2 **
56841617-G-T **
28689510-C-A 26543363-C-A **
28558050-T-C 26411903-T-C **
28549858-G-T 26403711-G-T **
28544372-G-A 26398225-G-A **
28531026-C-T 26384879-C-T **
27335809-A-G 25189662-A-G P1_g3 **
24241252-C-A 22095105-C-A P3_b1 **
27124166-T-A 24978019-T-A P1_g3 **
27124124-T-A 24977977-T-A P1_g3 **
27076337-G-T 24930190-G-T P1_r4 **
25916642-G-C 23770495-G-C P1_Y1 **
25181569-T-C 23035422-T-C g1 **
24875608-G-T 22729461-G-T g1 **
20481135-G-T 18319249-G-T P5_Dst **
19739398-G-T 17627518-G-T P5_Prx **
11011709-T-C **
14422544-A-G 12301819-A-G **
15475346-A-G 13363466-A-G **
5221094-A-C 5353053-A-C **
14964971-G-T 12853046-G-T **
14575895-G-C 12464095-G-C FGC4966 **
14461324-G-T 12340597-G-T **
14441985-T-A 12321258-T-A **
13854745-A-G 11734039-A-G **
15792846-A-C 13680966-A-C **
13837392-G-T 11716686-G-T FT65057 **
13642035-A-C 11486359-A-C **
13526492-G-T 11370816-G-T **
13509686-A-C 11354010-A-C **
13311785-T-C 11156109-T-C **
11026581-C-A **
15641709-TG-T 13529829-TG-T **
15815375-A-AT 13703495-A-AT **
19686100-A-G 17574220-A-G P5_Prx **
18659713-T-C 16547833-T-C **
19274833-C-A 17162953-C-A **
19168650-G-T 17056770-G-T **
19097284-C-T 16985404-C-T **
18682820-C-CA 16570940-C-CA **
18682820-C-T 16570940-C-T **
18682812-A-G 16570932-A-G **
17571882-G-T 15460002-G-T **
16218021-T-C 14106141-T-C **
17228429-T-G 15116549-T-G **
16971323-G-T 14859443-G-T **
16706219-C-A 14594339-C-A **
16405612-C-A 14293732-C-A **
16352175-G-T 14240295-G-T **
16342619-G-C 14230739-G-C **
5320733-C-A 5452692-C-A **
2762130-T-C 2894089-T-C **
5188629-C-A 5320588-C-A **
18753358-C-A 16641478-C-A **
9056309-C-A **
18101593-AACAC-A 15989713-AACAC-A 15×AC**
10690890-C-A **
21069802-C-A 18907916-C-A **
13218795-C-A 11063119-C-A **
18855617-C-A 16743737-C-A **
4241810-C-A 4373769-C-A **
4605025-C-A 4736984-C-A **
10692074-T-A **
21162935-C-A 19001049-C-A **
2762109-C-T 2894068-C-T **
3817381-C-A 3949340-C-A **
2762134-G-T 2894093-G-T **
23066810-C-A 20904924-C-A **
17374476-G-T 15262596-G-T **
56734761-G-T **
5063603-G-T 5195562-G-T **
13217472-C-A 11061796-C-A **
16147888-CAAAA-C 14036008-CAAAA-C P8_Dst 31×A**
4908026-CA-C 5039985-CA-C **
7704961-C-A 7836920-C-A **
14785079-G-A 12673149-G-A **
16686068-C-A 14574188-C-A **
10994059-G-C **
24381403-T-TAA 22235256-T-TAA **
10819087-G-T **
11031632-G-A **
19213585-C-A 17101705-C-A **
11013909-ACTCCC-A **
16522966-C-A 14411086-C-A **
3178224-C-A 3310183-C-A **
6286707-TTG-T 6418666-TTG-T IR3_Dst **
3374048-CATAAA-C 3506007-CATAAA-C 10×ATAAA**
59003761-A-AAC 56857614-A-AAC **
26514933-A-T 24368786-A-T P1_Y1 **
15305674-C-A 13193773-C-A **
19146560-T-G 17034680-T-G **
7224328-C-A 7356287-C-A **
14050750-C-A 11930044-C-A **
26376523-C-A 24230376-C-A P1_Y1 **
13705524-T-A 11549848-T-A **
6267696-T-TAG 6399655-T-TAG IR3_Dst 19×A**
5613524-C-A 5745483-C-A **
24241201-C-CAA 22095054-C-CAA P3_b1 **
10850705-C-A **
28758135-C-A 26611988-C-A **
2762131-G-T 2894090-G-T **
14191218-C-A 12070512-C-A **
10840751-A-C **
13698582-T-C 11542906-T-C **
13698586-T-A 11542910-T-A **
10973647-C-T **
7414274-TCTC-T 7546233-TCTC-T **
10664609-C-A **
4521868-C-A 4653827-C-A **
10971637-C-A **
20022466-T-G 17910586-T-G P5_Prx **
27952058-AAC-A 25805911-AAC-A P1_Y2 **
5200684-T-C 5332643-T-C **
13720557-C-A 11564881-C-A **
16037136-C-A 13925256-C-A **
56823278-G-T **
7043685-G-T 7175644-G-T **
4386749-G-A 4518708-G-A **
19356445-C-A 17244565-C-A **
4308647-A-G 4440606-A-G **
4241859-C-A 4373818-C-A **
3404287-C-A 3536246-C-A **
3189346-C-G 3321305-C-G **
17707374-C-A 15595494-C-A **
10950361-C-A **
3164628-T-C 3296587-T-C **
4712513-C-A 4844472-C-A **
3013867-G-T 3145826-G-T **
22537043-C-A 20375157-C-A **
10629993-C-CCACAG **
20943440-A-AC 18781554-A-AC P4_Dst **
15381166-C-A 13269286-C-A **
2762123-AG-A 2894082-AG-A **
2762113-A-G 2894072-A-G **
2762107-C-G 2894066-C-G **
2672405-CATCT-C 2804364-CATCT-C **
4469977-G-A 4601936-G-A **
9416824-C-A 9579215-C-A **
19670771-T-TCC 17558891-T-TCC P5_Prx **
4907118-C-A 5039077-C-A **
19600496-GTA-G 17488616-GTA-G P5_Prx **
11009198-C-A **
21182393-C-A 19020507-C-A **
14357950-C-A 12237245-C-A **
3545968-C-A 3677927-C-A **
10822936-C-A **
4996378-G-A 5128337-G-A **
10885568-G-T **
4907074-C-A 5039033-C-A **
20052714-G-T 17940834-G-T P5_Prx **
17370871-C-A 15258991-C-A **
4561053-T-A 4693012-T-A **
27076348-C-A 24930201-C-A P1_r4 **
4712525-C-A 4844484-C-A **
10677982-G-T **
18661684-T-C 16549804-T-C **
24415848-C-A 22269701-C-A **
21556729-A-G 19394843-A-G ***
16146479-A-AAAAGAAAG 14034599-A-AAAAGAAAG P8_Dst 12×AAAG***
13486820-A-G 11331144-A-G ***
18933550-C-A 16821670-C-A ***
10892560-T-G ***
12786501-CTT-C,CTTT 16×T***
7991033-C-T 8122992-C-T ***
23368619-C-A 21206733-C-A ***
7537708-CTGCAGTG-C 7669667-CTGCAGTG-C ***
22287805-AT-A 20125919-AT-A DYZ19 ***
4179037-A-G 4310996-A-G ***
24458760-CAAAAAA-C,CAAAAA 22312613-CAAAAAA-C,CAAAAA 18×A***
11020141-CATTCT-C,CATTCC ***
15477730-C-A 13365850-C-A 4×TAAT***
10961570-T-A ***
11003241-G-C,T ***
11020108-G-A,C ***
10778278-A-T ***
10944766-CG-C ***
3865655-C-A 3997614-C-A ***
13858829-C-A 11738123-C-A ***
13838718-AT-A 11718012-AT-A ***
10830868-A-G ***
11020128-T-TTCCAC ***
10995412-G-C ***
15411094-C-T 13299214-C-T ***
10995418-C-T ***
10799478-A-G ***
10788688-C-A ***
10778297-C-G ***
23294119-C-A 21132233-C-A ***
56835947-T-A ***
10778277-A-C,G ***
10791255-G-T ***
10992287-A-ACTATAC,C ***
16620118-C-A 14508238-C-A ***
23475586-G-T 21313700-G-T ***
10667014-C-CGAATTA,T ***
10664708-TC-T ***
10838962-C-A ***
10915893-C-T ***
10801559-T-A ***
10801547-C-G ***
10996727-C-A ***
18926872-CA-C,CAA 16814992-CA-C,CAA 17×A***
15653028-C-A 13541148-C-A FGC68379 ***
10778844-C-T ***
10801526-C-T ***
56844990-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 81092976920378961267777942
Used in age calculations976920378961267777942
Counts of SNPs55
Variant counts last updated 2019-07-03 01:27:20.



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