Tree Position

R-P312/S116 > DF19/S232 > DF88 > FGC11833 > Z17110 > S4268 > Z17112 > S9287 > 2968684-G-A

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
20510818-T-C 18348932-T-C P5_Dst A+
19668959-A-G 17557079-A-G P5_Prx A+
18365376-G-A 16253496-G-A P6_Prx A*
20053662-G-A 17941782-G-A P5_Prx A*
22237427-G-T 20075541-G-T DYZ19 A*
23770581-G-A 21608695-G-A BY177464 Y+
17637725-T-G 15525845-T-G BY177023 YY+
17615729-C-T 15503849-C-T BY177022 YY+
18937993-A-G 16826113-A-G BY177148 YY+
17589993-A-T 15478113-A-T BY162384 YY+
21292646-C-T 19130760-C-T BY177249 YY+
21810064-C-T 19648178-C-T BY162985 YY+
22116201-T-G 19954315-T-G BY163044 YY+
22478391-C-A 20316505-C-A DYZ19 +
22484280-C-T 20322394-C-T BY177563 DYZ19 +
17813772-A-G 15701892-A-G BY177048 YY+
22553251-G-A 20391365-G-A BY177352 YY+
9035390-T-A 9197781-T-A BY176654 Y+
26068160-A-G 23922013-A-G BY226614 P1_Y1 +
22270711-G-T 20108825-G-T BY2899BY24404 DYZ19 +
7597407-TC-T 7729366-TC-T +
7682288-T-C 7814247-T-C BY176484 YY+
17864715-T-C 15752835-T-C BY177054 YY+
8375328-C-A 8507287-C-A BY161381 YY+
22335078-G-C 20173192-G-C DYZ19 *
22300344-C-A 20138458-C-A DYZ19 *
28095959-TG-T 25949812-TG-T P1_Y2 *
22430315-C-A 20268429-C-A DYZ19 *
13233501-G-A 11077825-G-A **
10831384-T-C **
10803295-C-T **
10987789-C-G **
13698849-A-T 11543173-A-T **
13498424-C-A 11342748-C-A **
13446824-TCCATTC-T 11291148-TCCATTC-T **
10931337-T-C **
10860335-C-A **
13323313-C-T 11167637-C-T **
13323298-A-C 11167622-A-C **
10967517-C-CTCTTCCGTAT **
10992988-C-A **
11005016-C-A **
10980700-AT-A **
10980703-CCA-C **
10971902-C-GGGTTA **
13475122-C-A 11319446-C-A **
10803285-T-A **
9799160-T-G 9961551-T-G **
7154814-AAC-A 7286773-AAC-A **
7201580-C-A 7333539-C-A **
7311506-T-G 7443465-T-G **
7469571-A-G 7601530-A-G IR1_L **
7541156-G-A 7673115-G-A **
7866964-C-A 7998923-C-A **
9109513-G-T **
9041064-A-G 9203455-A-G **
9865011-TA-T 10027402-TA-T 8×A**
10803268-T-C **
10677487-AT-A **
10769471-A-T **
10769479-C-CCACTA **
10803212-G-C **
10803240-A-C **
10803241-A-C **
10803247-A-T **
10803252-A-T **
13811168-G-A 11690462-G-A **
16041137-C-A 13929257-C-A **
13874811-T-G 11754105-T-G **
25461457-TTTG-T 23315310-TTTG-T P2_r2 **
20108246-AT-A 17996366-AT-A P5_Dst **
20613609-CTTTT-C 18451723-CTTTT-C P4_Prx 13×T**
21111729-T-C 18949843-T-C **
21540804-T-C 19378918-T-C **
22624889-T-C 20463003-T-C **
23818384-T-C 21656498-T-C **
24403153-C-A 22257006-C-A **
25246441-C-G 23100294-C-G P2_r1 **
26011483-T-A 23865336-T-A P1_Y1 **
19753367-T-A 17641487-T-A P5_Prx **
26024564-T-C 23878417-T-C P1_Y1 **
26228734-C-A 24082587-C-A P1_Y1 **
28461718-A-C 26315571-A-C **
28536305-GA-G 26390158-GA-G **
28583072-T-C 26436925-T-C **
28588142-A-G 26441995-A-G **
28600721-C-CA 26454574-C-CA **
28784441-G-C 26638294-G-C **
28812359-T-A 26666212-T-A **
19982555-T-TC 17870675-T-TC P5_Prx **
19415709-C-T 17303829-C-T **
13960603-G-A 11839897-G-A **
16001279-C-A 13889399-C-A **
14316354-T-G 12195648-T-G **
14431969-C-A 12311242-C-A **
14483643-T-G 12362912-T-G **
14585855-G-T 12474055-G-T **
15140891-C-CTT 13028978-C-CTT 11×T**
15533068-C-T 13421188-C-T **
15677206-A-C 13565326-A-C **
15793474-A-C 13681594-A-C **
6828907-C-A 6960866-C-A **
18838714-T-A 16726834-T-A **
16309278-G-A 14197398-G-A **
16319544-C-A 14207664-C-A **
16662507-G-A 14550627-G-A **
16702859-T-G 14590979-T-G **
16779172-T-C 14667292-T-C **
17779608-G-A 15667728-G-A FT102404 **
18263884-A-C 16152004-A-C **
18825628-TCAA-T 16713748-TCAA-T **
7115190-CCA-C 7247149-CCA-C **
7390018-T-C 7521977-T-C **
6663370-A-G 6795329-A-G **
7541505-C-A 7673464-C-A **
10971922-C-A **
13476312-C-A 11320636-C-A **
13976400-A-T 11855694-A-T **
3275755-C-A 3407714-C-A **
18329506-T-TC 16217626-T-TC P6_Prx **
19558898-T-G 17447018-T-G **
16351827-G-T 14239947-G-T **
11676655-C-A **
3491948-C-A 3623907-C-A **
10887975-T-C **
4847467-C-A 4979426-C-A **
20340135-C-A 18178249-C-A P5_Dst 26×T**
14227710-C-A 12107004-C-A **
5450013-G-T 5581972-G-T **
14447351-C-A 12326624-C-A **
6682158-C-A 6814117-C-A **
10678669-A-G **
10770577-T-C **
21919635-C-A 19757749-C-A **
6523154-G-T 6655113-G-T **
10803270-T-C **
7723650-C-A 7855609-C-A **
14427132-C-A 12306407-C-A **
10658244-C-A **
36039-T-A **
23091628-C-A 20929742-C-A **
10667017-T-G **
13811149-G-C 11690443-G-C **
16053728-C-A 13941848-C-A **
4200939-C-A 4332898-C-A **
18990321-C-A 16878441-C-A **
22309919-A-T 20148033-A-T DYZ19 **
10869225-G-T **
11004517-T-A **
11004521-T-G **
10885169-T-A **
10666925-A-C **
10666988-C-CCCTGT **
10667033-C-A **
13329101-C-A 11173425-C-A **
3830907-C-A 3962866-C-A **
25955980-GT-G 23809833-GT-G P1_Y1 **
28784625-G-T 26638478-G-T **
15654991-T-TA 13543111-T-TA 9×A**
14339110-T-C 12218405-T-C **
6816732-A-T 6948691-A-T **
15365965-G-A 13254085-G-A FT21976 **
12675896-ATAT-A **
18901262-G-A 16789382-G-A **
9205084-C-A 9367475-C-A **
2758230-C-A 2890189-C-A **
3626861-G-T 3758820-G-T **
10803246-A-C **
19125357-C-A 17013477-C-A **
4120190-ATT-A 4252149-ATT-A **
10980424-C-A **
22651014-C-A 20489128-C-A **
14017535-C-A 11896829-C-A **
10666427-C-A **
10778774-C-A **
21856600-C-A 19694714-C-A **
3599650-C-A 3731609-C-A **
3705117-C-A 3837076-C-A **
4071095-C-A 4203054-C-A **
4075765-G-T 4207724-G-T **
4108339-C-A 4240298-C-A **
4139839-G-T 4271798-G-T **
23779883-C-A 21617997-C-A **
4538294-C-A 4670253-C-A **
4655549-C-A 4787508-C-A **
4831961-G-T 4963920-G-T **
4847474-C-A 4979433-C-A **
4847579-CA-C 4979538-CA-C **
4868303-C-A 5000262-C-A **
4872698-G-T 5004657-G-T **
5219657-C-A 5351616-C-A **
5349745-C-A 5481704-C-A **
5824015-G-T 5955974-G-T **
5824031-G-T 5955990-G-T **
5895024-T-C 6026983-T-C **
6475615-C-A 6607574-C-A **
10801666-C-CGG **
3546025-T-A 3677984-T-A **
28812383-G-T 26666236-G-T **
13993520-C-A 11872814-C-A **
10887970-T-TCCGTA **
9141746-C-A 9304137-C-A **
13838449-A-C 11717743-A-C **
22079753-C-A 19917867-C-A **
10769432-T-G **
23186151-C-A 21024265-C-A **
13469498-C-A 11313822-C-A **
4540353-C-A 4672312-C-A FT184003 **
11648093-C-A **
10827811-G-A **
13477897-T-C 11322221-T-C Z11997 ***
13472549-C-T 11316873-C-T ***
28784426-G-A 26638279-G-A ***
13481352-C-A 11325676-C-A ***
6149871-TAC-T,TACAC 6281830-TAC-T,TACAC IR3_Dst 17×AC***
13600982-GATATAT-G 11445306-GATATAT-G 10×AT***
10657297-T-G ***
13453173-C-CAACTG 11297497-C-CAACTG ***
56833173-CTCCAC-C,CTCCAT ***
18695923-AT-A,ATT 16584043-AT-A,ATT 12×T***
15753178-CTTTTTT-C,CT 13641298-CTTTTTT-C,CT 20×T***
13459916-G-T 11304240-G-T ***
13453152-T-G 11297476-T-G ***
16308974-G-T 14197094-G-T ***
9511307-C-G 9673698-C-G ***
16308983-C-T 14197103-C-T ***
11021355-T-TCC,TCT ***
10657295-C-G ***
13624352-GTATATATA-G 11468676-GTATATATA-G 11×TA***
13799041-G-T 11678335-G-T ***
13315805-C-A 11160129-C-A ***
11014376-C-G ***
7306313-C-A 7438272-C-A ***
13869093-T-A 11748387-T-A ***
16018327-C-A 13906447-C-A ***
16308972-G-A 14197092-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 393732975273579979097921226
Used in age calculations975273579979097921226
Counts of SNPs1214
Variant counts last updated 2020-08-04 02:50:39.

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