Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > Y14240 > FGC35999

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
591672
20283937-A-G 18122051-A-G P5_Dst A+
18456387-A-C 16344507-A-C P6_Dst A+
19864941-G-A 17753061-G-A P5_Prx A*
26188167-C-T 24042020-C-T P1_Y1 A*
22224600-A-C 20062714-A-C DYZ19 A*
6303255-C-T 6435214-C-T IR3_Dst A*
20040507-G-A 17928627-G-A P5_Prx A*
19895839-T-C 17783959-T-C P5_Prx A*
19882077-C-T 17770197-C-T P5_Prx A*
13687329-C-A 11531653-C-A A*
25890759-A-C 23744612-A-C P1_Y1 A*
26034854-C-T 23888707-C-T P1_Y1 A*
18352712-T-G 16240832-T-G P6_Prx A*
28817025-T-C 26670878-T-C A*
18964449-T-A 16852569-T-A BY125141 YY+
22294221-G-T 20132335-G-T BY216491 DYZ19 +
15255476-T-A 13143562-T-A BY100468 YY+
22181077-A-G 20019191-A-G BY138223 YY+
15030380-G-T 12918468-G-T FGC31808 YY+
22003919-CAG-C 19842033-CAG-C +
21548181-C-T 19386295-C-T BY133729 YY+
21480542-T-C 19318656-T-C BY133230 YY+
14972587-G-A 12860662-G-A BY98815 YY+
15769580-C-T 13657700-C-T BY103966 YY+
14590370-G-GC 12478570-G-GC +
16280022-A-G 14168142-A-G BY106611 YY+
15508768-C-T 13396888-C-T BY102074 YY+
19159681-A-G 17047801-A-G BY126824 YY+
14401606-C-G 12280903-C-G YY+
13647977-A-G 11492301-A-G BY86959 +
18930807-A-G 16818927-A-G BY124884 YY+
18894080-G-A 16782200-G-A FGC73166 YY+
13983173-C-G 11862467-C-G BY92069 Y+
18422411-C-A 16310531-C-A BY121900 P6_Gap +
18397739-A-G 16285859-A-G BY121686 P6_Gap +
6987445-T-A 7119404-T-A BY62736 YY+
16850537-G-T 14738657-G-T YY+
18240835-C-A 16128955-C-A BY121116 Y+
3347173-G-A 3479132-G-A BY57580 +
16947766-A-G 14835886-A-G BY111318 YY+
18095757-A-T 15983877-A-T BY119973 YY+
18034710-T-G 15922830-T-G BY119337 YY+
17692670-C-T 15580790-C-T BY116725 YY+
22294221-G-GT 20132335-G-GT DYZ19 +
16329-G-T +
23032000-C-G 20870114-C-G BY142438 YY+
23132812-G-A 20970926-G-A BY143231 YY+
8119597-G-C 8251556-G-C BY70096 YY+
8465601-G-A 8597560-G-A BY73031 YY+
8689744-C-A 8821703-C-A BY75228 YY+
8705731-C-T 8837690-C-T BY156042 YY+
8397239-T-G 8529198-T-G BY72317 YY+
24372520-T-G 22226373-T-G BY149425 +
23032018-A-T 20870132-A-T BY142439 YY+
23045506-T-C 20883620-T-C BY142542 YY+
28071618-T-G 25925471-T-G P1_Y2 *
13809548-G-T 11688842-G-T **
13724727-G-C 11569051-G-C **
10820439-C-A **
10825027-T-C **
13714369-T-C 11558693-T-C **
10831074-C-T **
10825037-T-C **
11674683-G-T **
10831091-T-A **
13962203-C-A 11841497-C-A **
13945310-C-T 11824604-C-T **
13884784-C-A 11764078-C-A **
13809796-G-T 11689090-G-T **
14007525-C-A 11886819-C-A **
14109632-C-A 11988926-C-A **
14029156-T-G 11908450-T-G **
10800866-A-T **
10781078-A-T **
15248219-C-A 13136305-C-A **
10789140-C-A **
10799591-ACTCCA-T **
10800854-C-A **
14743089-A-G 12631157-A-G **
14695991-T-G 12584057-T-G **
14679735-T-C 12567801-T-C **
14561447-C-A 12449648-C-A **
13605655-A-C 11449979-A-C **
14550756-T-G 12438957-T-G **
14483156-T-G 12362425-T-G **
14467670-G-A 12346939-G-A **
10809025-T-G **
10809650-T-C **
14299908-C-A 12179202-C-A **
14228777-A-C 12108071-A-C **
14183271-C-A 12062565-C-A **
14180542-C-A 12059836-C-A **
10831094-C-A **
10831096-T-C **
13555152-C-A 11399476-C-A **
10927213-A-T **
10954287-AT-A **
10895975-C-T **
10912272-T-A **
10954072-A-T **
10947217-G-C **
10947181-ACTGCACTC-A **
10929852-G-C **
10895473-C-A **
10947157-CTGCAG-C **
10931029-T-A **
10947157-C-T **
10947130-C-G **
10931136-C-G **
10941717-T-A **
10944015-C-G **
10895508-TGTCACCAAGGCTGGATTGCAGTGGCACA-T **
10956646-T-G **
13494021-C-A 11338345-C-A **
10889496-T-C **
13472212-CCCA-C 11316536-CCCA-C **
13433779-T-G 11278103-T-G **
10852112-C-A **
10858475-T-A **
10858483-C-CACCCA **
13433224-G-T 11277548-G-T **
10885381-C-A **
11038232-A-C **
10961457-ATTCCTC-A **
11036060-C-A **
11035824-G-T **
11034910-T-A **
10982834-A-C **
10977110-C-G **
10977086-T-C **
10972151-C-A **
15452320-T-A 13340440-T-A **
16652814-A-C 14540934-A-C **
15630091-C-T 13518211-C-T **
23059037-C-T 20897151-C-T FGC36031 **
23182401-A-T 21020515-A-T **
23182387-C-A 21020501-C-A **
23182382-A-T 21020496-A-T **
23182368-G-T 21020482-G-T **
23182358-A-T 21020472-A-T **
23177455-T-A 21015569-T-A **
23087451-G-T 20925565-G-T **
23078864-A-T 20916978-A-T **
22951131-C-A 20789245-C-A **
23182413-A-T 21020527-A-T **
22243975-T-A 20082089-T-A DYZ19 **
22132718-C-A 19970832-C-A FT35277 **
22089937-A-T 19928051-A-T **
22089924-A-T 19928038-A-T **
21597703-A-G 19435817-A-G **
21435313-A-C 19273427-A-C **
21118683-C-A 18956797-C-A **
21077156-CA-C 18915270-CA-C **
19901214-A-T 17789334-A-T P5_Prx **
23182404-T-G 21020518-T-G **
23512263-G-T 21350377-G-T **
19551800-T-C 17439920-T-C **
28484571-C-A 26338424-C-A **
56844700-T-G **
56828107-T-A **
56727832-C-A **
56727830-C-A **
28802781-G-C 26656634-G-C **
28686119-C-A 26539972-C-A **
28586691-C-A 26440544-C-A **
28518704-C-A 26372557-C-A **
28484667-C-A 26338520-C-A **
28483734-A-C 26337587-A-C **
23953340-C-A 21807193-C-A **
28480714-C-A 26334567-C-A **
28100499-CAAA-C 25954352-CAAA-C P1_Y2 **
27971763-A-T 25825616-A-T P1_Y2 **
27340003-C-A 25193856-C-A P1_g3 **
25955469-T-G 23809322-T-G P1_Y1 **
25424944-C-A 23278797-C-A P2_r2 **
24241608-A-T 22095461-A-T P3_b1 **
24241555-A-T 22095408-A-T P3_b1 **
24241539-A-T 22095392-A-T P3_b1 **
19678777-T-C 17566897-T-C P5_Prx **
19528332-G-T 17416452-G-T **
15665748-G-T 13553868-G-T **
16271123-A-C 14159243-A-C **
16724917-C-A 14613037-C-A **
16710299-C-A 14598419-C-A **
16706093-C-T 14594213-C-T **
10760162-C-A **
16636506-C-A 14524626-C-A **
16427454-G-A 14315574-G-A **
16384621-C-A 14272741-C-A **
16274035-TTCTGA-T 14162155-TTCTGA-T **
16184371-G-T 14072491-G-T **
16829307-G-C 14717427-G-C **
16171494-C-A 14059614-C-A **
16113767-A-T 14001887-A-T P8_Prx **
16113751-C-A 14001871-C-A P8_Prx **
16113712-A-T 14001832-A-T P8_Prx **
16001047-C-A 13889167-C-A **
15732239-A-C 13620359-A-C **
15732216-A-C 13620336-A-C **
15732163-A-C 13620283-A-C **
15698518-C-T 13586638-C-T **
16783374-G-T 14671494-G-T **
16896249-A-C 14784369-A-C **
19298800-C-A 17186920-C-A **
17638492-C-A 15526612-C-A **
19079277-C-A 16967397-C-A **
19031339-C-A 16919459-C-A **
18997237-C-A 16885357-C-A **
18810758-A-C 16698878-A-C **
18793952-C-T 16682072-C-T **
18511239-T-A 16399359-T-A P6_Dst **
18361552-T-A 16249672-T-A P6_Prx **
17994745-C-A 15882865-C-A P7_Prx **
17668358-A-T 15556478-A-T **
17513966-G-A 15402086-G-A **
16997881-G-T 14886001-G-T **
17222395-G-T 15110515-G-T **
17130487-C-A 15018607-C-A **
17129997-T-G 15018117-T-G **
17074799-G-T 14962919-G-T **
17074797-G-A 14962917-G-A **
17074772-G-A 14962892-G-A **
17074731-G-A 14962851-G-A **
17074703-G-A 14962823-G-A **
17033412-G-GT 14921532-G-GT **
5620244-C-A 5752203-C-A **
10050146-A-T 10212537-A-T **
10758209-G-T **
10994280-C-T **
11650754-C-A **
23654821-G-T 21492935-G-T **
10858467-C-G **
10654473-G-T **
10953425-A-T **
18480043-G-GAAAA 16368163-G-GAAAA P6_Dst 17×A**
23425358-C-CA 21263472-C-CA **
18756318-C-A 16644438-C-A **
10781072-C-T **
10994289-CT-C **
10939005-C-A **
10994341-T-G **
22422130-T-G 20260244-T-G DYZ19 **
16896230-A-C 14784350-A-C **
6922823-C-A 7054782-C-A **
10982373-C-A **
22243980-T-A 20082094-T-A DYZ19 **
16942058-C-A 14830178-C-A **
10678925-A-T **
56822662-G-T **
11035356-C-A **
6359714-G-T 6491673-G-T **
11035226-C-A **
10924198-C-A **
21422161-CA-C 19260275-CA-C **
10800821-A-T **
7045-A-T **
11018138-C-A **
10831092-C-A **
10757779-C-A **
10691380-T-A **
10988847-C-A **
10757780-A-AATTCC **
19510250-C-A 17398370-C-A **
14051799-C-A 11931093-C-A **
5080484-C-A 5212443-C-A **
7108276-C-A 7240235-C-A **
6596238-C-A 6728197-C-A **
21459898-C-A 19298012-C-A **
27971765-A-T 25825618-A-T P1_Y2 **
17317641-C-A 15205761-C-A **
10939038-T-G **
14544220-G-T 12432421-G-T **
27947065-ATAT-A 25800918-ATAT-A P1_Y2 **
24278462-AC-A 22132315-AC-A P3_b1 **
8078827-G-T 8210786-G-T **
10957818-C-A **
13961802-C-A 11841096-C-A **
17074802-C-T 14962922-C-T **
19568180-C-A 17456300-C-A P5_Prx **
10836533-C-T **
14468306-C-A 12347575-C-A **
16104401-T-G 13992521-T-G P8_Prx **
20641608-AG-A 18479722-AG-A P4_Prx **
19104542-C-A 16992662-C-A **
11036053-T-C **
11036030-CACTAT-C **
10772683-ATGCAC-A **
3834940-C-A 3966899-C-A **
28673127-C-A 26526980-C-A **
21002539-C-CTT 18840653-C-CTT P4_Dst **
11001880-G-T **
10889492-C-A **
17926565-G-T 15814685-G-T **
20815507-C-A 18653621-C-A P4_Gap **
10964631-A-C **
18730489-C-A 16618609-C-A **
11001912-C-T **
16602658-C-A 14490778-C-A **
15185471-C-A 13073557-C-A **
28594677-C-A 26448530-C-A **
2974390-C-A 3106349-C-A **
10935637-A-T **
23517658-C-A 21355772-C-A **
7183017-C-A 7314976-C-A **
10950546-A-G **
7359709-C-A 7491668-C-A **
10889789-C-G **
7650288-C-A 7782247-C-A **
10977090-C-T **
25892422-T-A 23746275-T-A P1_Y1 **
15626589-G-T 13514709-G-T **
3834543-C-A 3966502-C-A **
15497494-C-A 13385614-C-A **
10760710-T-C **
5905420-C-A 6037379-C-A **
4959965-T-TA 5091924-T-TA 8×A**
6074672-G-T 6206631-G-T **
10781056-C-CCTCAG **
18749503-C-A 16637623-C-A **
10781048-A-T **
6664501-C-G 6796460-C-G **
13255248-T-C 11099572-T-C **
7240283-C-A 7372242-C-A **
14463592-T-G 12342865-T-G **
10756209-C-G **
10756201-C-A **
10800951-G-T **
10987159-C-CTT **
10987155-T-TCC **
10761328-A-C **
11648729-G-T **
16505101-C-A 14393221-C-A **
5678711-C-A 5810670-C-A **
6302404-A-T 6434363-A-T IR3_Dst **
6302394-A-T 6434353-A-T IR3_Dst **
6302389-A-T 6434348-A-T IR3_Dst **
6209220-T-A 6341179-T-A IR3_Dst **
6209214-T-A 6341173-T-A IR3_Dst **
6209201-T-A 6341160-T-A IR3_Dst **
6130640-A-G 6262599-A-G **
5877957-G-T 6009916-G-T **
5858466-A-G 5990425-A-G **
5729526-A-T 5861485-A-T **
5635117-T-A 5767076-T-A **
6774137-G-GCT 6906096-G-GCT **
5631486-C-A 5763445-C-A **
5522976-A-T 5654935-A-T **
5367000-C-G 5498959-C-G **
5321009-G-T 5452968-G-T **
5282837-C-A 5414796-C-A **
13714364-T-A 11558688-T-A **
5193280-C-A 5325239-C-A **
5021286-C-A 5153245-C-A **
4925324-C-A 5057283-C-A FT52389 **
4714064-C-A 4846023-C-A **
6435116-C-A 6567075-C-A **
6776133-T-C 6908092-T-C FT55668 **
4630266-C-A 4762225-C-A **
9166803-G-GA 9329194-G-GA 8×A**
10744611-T-G **
10692696-C-A **
10684987-C-T **
10669464-C-CT **
10669456-T-TTAGAC **
10028420-A-C 10190811-A-C **
9931477-T-G 10093868-T-G **
9830583-G-T 9992974-G-T **
9631691-G-GTACT 9794082-G-GTACT IR3_Prx **
9514516-G-T 9676907-G-T **
9079251-C-A 9241642-C-A **
7044502-T-A 7176461-T-A **
8855884-A-C 8987843-A-C **
8855774-G-T 8987733-G-T **
8741493-A-T 8873452-A-T **
7664629-C-A 7796588-C-A **
7452980-T-C 7584939-T-C IR1_L **
7309907-A-G 7441866-A-G **
7228367-C-A 7360326-C-A **
7200039-A-C 7331998-A-C **
7170433-G-T 7302392-G-T **
7165502-T-A 7297461-T-A **
7159278-T-A 7291237-T-A **
4667464-G-T 4799423-G-T **
10760220-C-A **
7163063-C-A 7295022-C-A **
14527607-C-A 12415808-C-A **
16351631-C-A 14239751-C-A **
10961374-TCC-T **
10986415-A-T **
10691262-C-A **
7280952-CTTTTTTTTTT-C 7412911-CTTTTTTTTTT-C 26×T**
9830542-G-T 9992933-G-T **
10050145-T-G 10212536-T-G **
16621368-G-T 14509488-G-T **
6592430-C-A 6724389-C-A **
10754082-T-G **
14471825-A-T 12351094-A-T FT34390 **
10924027-C-A **
4778690-T-G 4910649-T-G **
5388247-G-T 5520206-G-T **
10831082-T-C **
28438101-G-T 26291954-G-T P1_gr2 **
4546416-C-A 4678375-C-A **
10686711-C-A **
9639029-G-T 9801420-G-T IR3_Prx **
4377342-C-T 4509301-C-T **
4222596-T-A 4354555-T-A **
3347068-C-A 3479027-C-A **
19507084-C-A 17395204-C-A **
4195167-G-T 4327126-G-T **
10882571-C-A **
27810395-G-T 25664248-G-T P1_Y2 **
4115685-T-C 4247644-T-C **
7080794-C-A 7212753-C-A **
4100826-C-A 4232785-C-A **
3811282-C-A 3943241-C-A **
2885457-A-T 3017416-A-T **
2684035-T-G 2815994-T-G **
10781064-T-C **
10841721-C-A ***
24517732-C-A 22371585-C-A ***
19436672-AAAAGAAAGAAAGAAAG-A,AAAAGAAAG 17324792-AAAAGAAAGAAAGAAAG-A,AAAAGAAAG 17×AAAG***
9509766-C-T 9672157-C-T ***
10950527-C-T ***
10684909-C-T ***
10684914-G-C ***
18933552-C-A 16821672-C-A ***
10684922-C-T ***
10684931-C-T ***
10684949-T-A ***
22236045-T-A 20074159-T-A DYZ19 ***
9702838-C-T 9865229-C-T IR3_Prx ***
10999943-C-A ***
11021346-CCTCTCTACTGCATTC-C,CCTGTCCACTCCGCAT ***
18401488-C-A 16289608-C-A P6_Gap ***
15740572-C-A 13628692-C-A ***
11655820-G-T ***
13475492-G-A 11319816-G-A ***
5965858-C-A 6097817-C-A ***
13466084-A-C 11310408-A-C ***
13869441-A-G 11748735-A-G ***
18838470-C-T 16726590-C-T ***
15541783-C-A 13429903-C-A ***
22023280-T-C 19861394-T-C ***
13466095-C-G 11310419-C-G ***
19377536-C-A 17265656-C-A ***
23471038-CAAA-C,CA 21309152-CAAA-C,CA 19×A***
22236066-C-T 20074180-C-T DYZ19 ***
13476255-C-A 11320579-C-A ***
56837862-G-T ***
22300811-A-G 20138925-A-G DYZ19 ***
10950535-A-ACCGCT ***
56834577-C-A ***
13457757-A-C 11302081-A-C ***
10932711-A-T ***
15158089-T-TA 13046175-T-TA ***
13642780-C-A 11487104-C-A ***
20614800-C-T 18452914-C-T P4_Prx ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 591672988935280515647926959
Used in age calculations988935280515647926959
Counts of SNPs3030
Variant counts last updated 2019-07-19 22:42:41.



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