Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > Z150 > CTS9490 > S7404 > A8452

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
10804476-C-G A+
7097256-G-T 7229215-G-T YYA+
28817338-T-C 26671191-T-C A*
9550079-A-G 9712470-A-G IR3_Prx A*
5400894-G-T 5532853-G-T A*
20129659-C-A 18017779-C-A P5_Dst A*
20129655-T-A 18017775-T-A P5_Dst A*
20129651-T-G 18017771-T-G P5_Dst A*
28816780-T-C 26670633-T-C A*
6320301-T-C 6452260-T-C IR3_Dst A*A*
18442060-T-C 16330180-T-C P6_Dst A*
6176534-C-T 6308493-C-T IR3_Dst A*A*
24283444-A-G 22137297-A-G P3_t1 A*A*
13687941-G-T 11532265-G-T A*
13712771-A-G 11557095-A-G A*
20690184-T-G 18528298-T-G P4_Prx A*A*
19578450-A-G 17466570-A-G P5_Prx YA*A*
18367023-A-G 16255143-A-G P6_Prx A*A*
9703854-G-A 9866245-G-A IR3_Prx A*
25959232-C-T 23813085-C-T P1_Y1 A*A*
26241545-A-G 24095398-A-G P1_Y1 A*
25615323-C-A 23469176-C-A P1_gr1 A*
20964950-G-A 18803064-G-A P4_Dst A*
20679228-C-T 18517342-C-T P4_Prx A*
20601323-T-C 18439437-T-C P5_Dst A*
10631255-C-G A*
24257064-T-C 22110917-T-C P3_b1 A*
26409398-T-C 24263251-T-C P1_Y1 A*
10631281-A-C A*
26465253-C-T 24319106-C-T P1_Y1 A*
15693034-C-A 13581154-C-A BY181613 YY++
17883065-G-A 15771185-G-A BY181849 YY++
22087491-T-C 19925605-T-C BY182147 YY++
7778285-T-G 7910244-T-G BY181182 YY++
19298344-C-T 17186464-C-T CTS10158 Y+
17767588-G-A 15655708-G-A BY181843 YY++
17780258-G-A 15668378-G-A BY181844 YY++
8792872-TCTCC-T 8924831-TCTCC-T ++
22490426-C-A 20328540-C-A BY53339 DYZ19 +
18045723-C-T 15933843-C-T BY181873 YY++
7803654-A-T 7935613-A-T M10619 YY++
18088677-A-G 15976797-A-G BY181877 Y++
18155517-A-G 16043637-A-G YY**+
19090258-G-T 16978378-G-T BY181973 YY++
15764775-T-C 13652895-T-C BY181620 YY++
6389882-G-A 6521841-G-A FT78653 *+
15846887-G-A 13735007-G-A BY181627 YY++
7418834-T-C 7550793-T-C FT78819 YY**+
7937462-T-A 8069421-T-A BY181209 YY++
8504983-T-C 8636942-T-C BY181295 YY++
16983198-G-T 14871318-G-T BY181749 YY++
17221252-G-A 15109372-G-A FT79527 Y+
16723510-G-A 14611630-G-A FT79467 Y+
13890006-T-C 11769300-T-C FT79075 Y+
13497046-C-T 11341370-C-T +
13269684-G-C 11114008-G-C +
17434999-C-T 15323119-C-T YY++
2800440-A-G 2932399-A-G BY181016 YY++
17590579-G-T 15478699-G-T BY181826 YY++
9455150-T-C 9617541-T-C BY181383 YY++
14061905-C-T 11941199-C-T BY181455 YY++
2806907-C-A 2938866-C-A BY181018 YY+**
3055905-C-T 3187864-C-T FT77752 +
8148414-C-A 8280373-C-A BY181231 YY++
3483181-G-T 3615140-G-T FT38430 +
4693443-T-G 4825402-T-G FT78203 +
5373178-T-A 5505137-T-A FT78414 +
5997346-T-C 6129305-T-C FT78610 +
17711450-G-C 15599570-G-C BY181840 YY++
8098560-G-T 8230519-G-T BY181223 YY++
16842867-ATGTG-A,ATG 14730987-ATGTG-A,ATG 22×TG*
24620470-G-GACA 22474323-G-GACA P3_t2 **
14627384-A-AAC 12515452-A-AAC 16×AC*
22299599-A-G 20137713-A-G DYZ19 *
14539327-C-A 12427528-C-A **
14591790-C-A 12479990-C-A **
14596122-C-A 12484322-C-A **
14296444-C-A 12175738-C-A **
16028685-C-A 13916805-C-A **
16323763-G-T 14211883-G-T **
14747454-G-A 12635523-G-A **
14926397-A-G 12814462-A-G **
15061712-A-G 12949804-A-G **
16274161-G-A 14162281-G-A **
16656658-C-T 14544778-C-T 14×T**
15369162-T-C 13257282-T-C **
10809099-T-G **
13974075-G-T 11853369-G-T **
16412332-C-T 14300452-C-T **
10822141-C-A **
10809095-T-C **
10837264-C-A **
10843135-C-A **
10808268-T-C **
10875196-A-C **
10875244-C-A **
10882350-C-A **
10890326-C-A **
10896348-C-A **
10926138-T-TTCCAC **
10926356-C-A **
10959158-T-C **
10964557-C-A **
13941025-G-A 11820319-G-A **
11018405-C-A **
11020257-C-A **
11034897-G-T **
13318964-A-C 11163288-A-C **
13422188-G-T 11266512-G-T **
10809152-C-A **
13728485-G-T 11572809-G-T **
11651408-A-G **
11662435-C-T **
11662439-T-C **
11662443-A-G **
11662452-T-A **
11664404-C-A **
13859184-G-T 11738478-G-T **
16354608-C-A 14242728-C-A **
20028184-T-G 17916304-T-G P5_Prx **
16616726-C-A 14504846-C-A **
7217765-G-GT 7349724-G-GT **
25872450-A-G 23726303-A-G P1_Y1 **
25872492-A-G 23726345-A-G P1_Y1 **
25872497-A-G 23726350-A-G P1_Y1 **
25934542-T-TG 23788395-T-TG P1_Y1 **
27232102-G-A 25085955-G-A P1_g3 **
27947850-GAAACAAATT-G 25801703-GAAACAAATT-G P1_Y2 **
28604550-C-A 26458403-C-A **
28765003-A-C 26618856-A-C **
56727794-G-C **
20473642-A-G 18311756-A-G P5_Dst **
28420682-A-AGT 26274535-A-AGT P1_gr2 **
27901267-A-AT 25755120-A-AT P1_Y2 **
6213675-C-G 6345634-C-G IR3_Dst **
7373476-C-T 7505435-C-T **
25860997-ATT-A 23714850-ATT-A P1_Y1 **
9657404-CAA-C 9819795-CAA-C IR3_Prx 12×A**
9657531-CT-C 9819922-CT-C IR3_Prx 9×T**
10785041-A-C **
13359958-C-A 11204282-C-A FT165143 **
16101323-A-C 13989443-A-C P8_Prx **
19765098-T-C 17653218-T-C P5_Prx **
20473619-G-GCT 18311733-G-GCT P5_Dst **
20473624-A-ATAG 18311738-A-ATAG P5_Dst **
20473630-A-G 18311744-A-G P5_Dst **
20473635-G-A 18311749-G-A P5_Dst **
23391647-A-G 21229761-A-G **
24611445-T-G 22465298-T-G P3_t2 **
26398379-T-TC 24252232-T-TC P1_Y1 **
28057423-T-C 25911276-T-C P1_Y2 **
25872442-T-G 23726295-T-G P1_Y1 **
24595272-T-C 22449125-T-C P3_t2 ****
16624905-C-A 14513025-C-A **
20028194-T-G 17916314-T-G P5_Prx **
17159674-G-T 15047794-G-T **
17363100-C-A 15251220-C-A **
17485221-C-A 15373341-C-A **
17737578-A-G 15625698-A-G **
18185979-A-G 16074099-A-G **
18189442-C-A 16077562-C-A **
19507222-C-A 17395342-C-A **
19740661-A-G 17628781-A-G P5_Prx **
19895439-C-A 17783559-C-A P5_Prx **
20028145-T-G 17916265-T-G P5_Prx **
20028156-T-G 17916276-T-G P5_Prx **
10790035-T-C **
20028188-T-G 17916308-T-G P5_Prx **
20028191-C-G 17916311-C-G P5_Prx **
20028206-T-G 17916326-T-G P5_Prx **
24450659-C-A 22304512-C-A **
20273574-TGAAAAAG-T 18111688-TGAAAAAG-T P5_Dst **
20802670-T-C 18640784-T-C P4_Gap **
20809848-A-C 18647962-A-C P4_Gap **
21097203-C-A 18935317-C-A **
21514103-C-A 19352217-C-A **
21565972-C-A 19404086-C-A **
22076224-A-G 19914338-A-G **
22168726-G-T 20006840-G-T **
22584314-T-G 20422428-T-G **
22617226-C-A 20455340-C-A **
23225484-G-A 21063598-G-A **
23311117-C-A 21149231-C-A **
23881896-A-G 21720010-A-G **
24303367-C-A 22157220-C-A P3_t1 **
10793716-C-A **
20989908-CT-C 18828022-CT-C P4_Dst 11×T**
10756021-C-A **
13457691-C-T 11302015-C-T **
8970837-T-A 9133228-T-A **
16629372-C-A 14517492-C-A **
3501238-C-A 3633197-C-A **
10981906-G-T **
10809149-A-G **
24205612-C-A 22059465-C-A P3_b1 **
17380638-C-A 15268758-C-A **
15688968-C-A 13577088-C-A FT180436 **
10809132-C-T **
16354637-C-A 14242757-C-A **
20473622-A-T 18311736-A-T P5_Dst 9×GAT**
21996184-G-T 19834298-G-T **
23475786-C-G 21313900-C-G **
23475780-A-G 21313894-A-G **
23475775-A-G 21313889-A-G **
23475766-G-A 21313880-G-A **
23047508-C-A 20885622-C-A **
10809127-C-T **
5447132-C-A 5579091-C-A **
7723948-C-CTTT 7855907-C-CTTT 25×T**
23475807-T-C 21313921-T-C **
22991213-C-A 20829327-C-A **
10889499-T-G **
10889481-G-C **
10889462-C-T **
7099323-C-T 7231282-C-T **
10690667-A-G **
17561453-C-A 15449573-C-A **
23475802-G-A 21313916-G-A **
7984380-C-A 8116339-C-A **
10959123-C-A **
19393037-C-A 17281157-C-A **
13463091-G-A 11307415-G-A **
21030989-GT-G 18869103-GT-G P4_Dst **
10833649-C-A **
21639064-C-A 19477178-C-A **
18381295-A-C 16269415-A-C P6_Prx **
8075785-C-A 8207744-C-A **
15201601-C-A 13089687-C-A **
16652152-T-C 14540272-T-C **
14605196-C-A 12493398-C-A **
17056895-A-G 14945015-A-G **
10787932-C-A **
10980285-C-A **
10666288-T-C **
21603939-A-C 19442053-A-C **
13457678-A-C 11302002-A-C **
13457676-C-T 11302000-C-T **
6693506-C-A 6825465-C-A **
26124460-G-C 23978313-G-C P1_Y1 **
24013841-C-A 21867694-C-A **
22996012-C-CAA 20834126-C-CAA 18×A**
3252907-C-A 3384866-C-A **
10683222-A-C **
3833953-ATCTC-A 3965912-ATCTC-A ****
22227931-C-A 20066045-C-A DYZ19 **
23475764-A-G 21313878-A-G **
17056906-A-G 14945026-A-G **
15411308-C-CAA 13299428-C-CAA 30×A**
10939674-C-T **
20872239-T-TC 18710353-T-TC P4_Dst **
10889504-T-C **
23475776-A-C 21313890-A-C **
10889491-T-G **
10889487-C-A **
10889483-T-A **
5172292-C-A 5304251-C-A **
18631062-C-A 16519182-C-A **
10765769-C-A **
4951600-C-A 5083559-C-A **
15733777-C-A 13621897-C-A **
16309042-G-A 14197162-G-A **
13554717-C-A 11399041-C-A **
10630880-C-A **
4902477-G-T 5034436-G-T **
22204379-C-A 20042493-C-A **
13223501-G-GGGA 11067825-G-GGGA **
28613187-C-A 26467040-C-A **
7044388-C-A 7176347-C-A **
16602623-C-A 14490743-C-A **
13728473-T-A 11572797-T-A **
13880175-C-A 11759469-C-A **
8353117-G-A 8485076-G-A **
5442130-G-T 5574089-G-T **
6070701-G-T 6202660-G-T **
6019736-G-T 6151695-G-T **
6010464-C-A 6142423-C-A **
5900342-C-A 6032301-C-A **
5859094-T-C 5991053-T-C **
5682103-G-A 5814062-G-A **
5538464-C-A 5670423-C-A **
14789438-C-G 12677509-C-G **
6478589-G-A 6610548-G-A **
4985744-C-A 5117703-C-A **
4671798-T-A 4803757-T-A **
4442952-C-A 4574911-C-A **
4100311-G-T 4232270-G-T **
4077634-C-T 4209593-C-T **
4003705-C-A 4135664-C-A **
3949097-C-T 4081056-C-T **
6352873-T-A 6484832-T-A **
7021741-C-A 7153700-C-A **
3698873-G-T 3830832-G-T **
8712139-C-A 8844098-C-A **
10666278-C-T **
10035998-C-A 10198389-C-A **
10011021-G-T 10173412-G-T **
9629368-T-C 9791759-T-C IR3_Prx **
9618139-C-A 9780530-C-A IR3_Prx **
9456147-C-A 9618538-C-A **
8786645-A-G 8918604-A-G **
8003172-G-T 8135131-G-T **
7029630-A-G 7161589-A-G **
8002346-AT-A 8134305-AT-A **
7418469-A-T 7550428-A-T **
7323004-C-A 7454963-C-A **
7314419-A-C 7446378-A-C **
7138956-T-G 7270915-T-G **
7110653-T-G 7242612-T-G **
7099335-A-AC 7231294-A-AC **
3918437-C-A 4050396-C-A **
4996006-T-A 5127965-T-A **
10793745-C-A **
3228851-C-A 3360810-C-A **
17103324-G-T 14991444-G-T **
10997537-C-A **
16988807-C-A 14876927-C-A **
10959116-A-C **
10959106-T-C **
20448941-C-CACAT 18287055-C-CACAT P5_Dst **
10824306-C-A **
26015325-C-CATAT 23869178-C-CATAT P1_Y1 **
18374210-CT-C 16262330-CT-C P6_Prx **
3042771-T-G 3174730-T-G **
10785042-C-T **
3413712-C-A 3545671-C-A **
19558393-C-A 17446513-C-A **
10998691-C-A **
3660541-G-T 3792500-G-T **
3648565-C-A 3780524-C-A **
3505867-C-T 3637826-C-T **
10959105-G-C **
10982465-C-A ***
13457954-TCCAC-T,TCCAT 11302278-TCCAC-T,TCCAT ***
10927765-G-T ***
19218409-A-G 17106529-A-G ***
10927238-C-A,T ***
7199581-C-T 7331540-C-T ***
14940073-CA-C,CAA 12828147-CA-C,CAA 15×A***
14385243-G-T 12264539-G-T ***
9936187-C-A 10098578-C-A ***
13258558-C-CTT 11102882-C-CTT 20×T***
10888034-TTCCAT-T,TTCCAG ***
9034655-C-CAA 9197046-C-CAA 12×A***
8125062-G-GAGA 8257021-G-GAGA 12×AGAGA***
10755392-ATCTCT-A,TGCTCT ***
11014888-C-A ***
10869207-C-A ***
10799508-AC-A,GC ***
10938424-C-A ***
23952613-A-G 21806466-A-G ***
10992840-T-C ***
15057738-AT-A,ATTT 12945830-AT-A,ATTT 18×T***
11014343-A-C ***
22537275-CAA-C,CA 20375389-CAA-C,CA 15×A***
10858937-C-A ***
14925764-C-A 12813829-C-A ***
3815196-G-T 3947155-G-T ***
23352228-T-A 21190342-T-A ***
15740563-C-A 13628683-C-A ***
10780992-G-T ***
23294374-T-C 21132488-T-C ***
23294364-A-G 21132478-A-G ***
56850092-C-A ***
58855985-T-A 56734886-A-T ***
22542483-C-A 20380597-C-A ***
8321435-C-CTTT 8453394-C-CTTT 15×T***
17285034-C-A 15173154-C-A ***
10869896-G-T ***
11656389-G-T ***
13459474-C-A 11303798-C-A ***
13735401-G-C 11579725-G-C ***
16592532-C-A 14480652-C-A ***
14310448-G-T 12189742-G-T ***
13671350-G-A 11515674-G-A ***
13475804-A-T 11320128-A-T ***
7510235-T-G 7642194-T-G ***
56839216-C-T ***
16703315-G-T 14591435-G-T ***
10856717-C-A ***
7989472-T-G 8121431-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: IN33860956969877695137687793
Kit: IN338601419428789655748038906
Used in age calculations1419428789655748038906
Counts of SNPs3226
Variant counts last updated 2020-08-04 02:50:29.

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