Soucy dit La Vigne
BigY2: IN33860, BigY3: IN33860MDKA Birth: France
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 IN33860 | BigY3 IN33860 |
---|---|---|---|---|---|---|---|---|---|
10804476-C-G | A+ | ||||||||
7097256-G-T | 7229215-G-T | FTA51831 | Y | Y | A+ | ||||
9654084-G-GA | 9816475-G-GA | IR3_Prx | 14×A | A* | |||||
6298030-G-GT | 6429989-G-GT | IR3_Dst | 8×T | A* | |||||
59017525-C-T | 56871378-C-T | A* | |||||||
13140543-C-T | 10630029-C-T | A* | |||||||
13449982-C-G | 11294306-C-G | A* | |||||||
10688012-T-A | A* | ||||||||
10794235-A-G | A* | ||||||||
13712773-G-A | 11557097-G-A | DYZ17 | A* | ||||||
13811092-T-G | 11690386-T-G | DYZ17 | A* | ||||||
10794234-C-A | A* | ||||||||
28811148-G-C | 26665001-G-C | A* | |||||||
6320301-T-C | 6452260-T-C | IR3_Dst | A* | A* | |||||
10631255-C-G | A* | ||||||||
10631274-C-CCTCTCAAAAT | A* | ||||||||
10631281-A-C | A* | ||||||||
13687941-G-T | 11532265-G-T | DYZ17 | A* | ||||||
13712771-A-G | 11557095-A-G | DYZ17 | A* | ||||||
18367023-A-G | 16255143-A-G | P6_Prx | A* | A* | |||||
19578450-A-G | 17466570-A-G | P5_Prx | Y | A* | A* | ||||
20690184-T-G | 18528298-T-G | P4_Prx | A* | A* | |||||
24283444-A-G | 22137297-A-G | P3_t1 | A* | A* | |||||
25959232-C-T | 23813085-C-T | P1_Y1 | A* | A* | |||||
28816780-T-C | 26670633-T-C | A* | |||||||
20129651-T-G | 18017771-T-G | P5_Dst | A* | ||||||
20129655-T-A | 18017775-T-A | P5_Dst | A* | ||||||
20129659-C-A | 18017779-C-A | P5_Dst | A* | ||||||
5400894-G-T | 5532853-G-T | A* | |||||||
9550079-A-G | 9712470-A-G | IR3_Prx | A* | ||||||
9703854-G-A | 9866245-G-A | IR3_Prx | A* | ||||||
18442060-T-C | 16330180-T-C | P6_Dst | A* | ||||||
20601323-T-C | 18439437-T-C | P5_Dst | A* | ||||||
20964950-G-A | 18803064-G-A | P4_Dst | A* | ||||||
24257064-T-C | 22110917-T-C | P3_b1 | A* | ||||||
26409398-T-C | 24263251-T-C | P1_Y1 | A* | ||||||
26465253-C-T | 24319106-C-T | P1_Y1 | A* | ||||||
28817338-T-C | 26671191-T-C | A* | |||||||
7803654-A-T | 7935613-A-T | M10619 | Y | Y | + | + | |||
19298344-C-T | 17186464-C-T | CTS10158 | Y | + | |||||
8792872-TCTCC-T | 8924831-TCTCC-T | + | + | ||||||
2800440-A-G | 2932399-A-G | BY181016 | Y | Y | + | + | |||
2806907-C-A | 2938866-C-A | BY181018 | Y | Y | + | ** | |||
6389882-G-A | 6521841-G-A | FT78653 | * | + | |||||
7418834-T-C | 7550793-T-C | FT78819 | Y | Y | ** | + | |||
7778285-T-G | 7910244-T-G | BY181182 | Y | Y | + | + | |||
7937462-T-A | 8069421-T-A | BY181209 | Y | Y | + | + | |||
8098560-G-T | 8230519-G-T | BY181223 | Y | Y | + | + | |||
8148414-C-A | 8280373-C-A | BY181231 | Y | Y | + | + | |||
8504983-T-C | 8636942-T-C | BY181295 | Y | Y | + | + | |||
9455150-T-C | 9617541-T-C | BY181383 | Y | Y | + | + | |||
14061905-C-T | 11941199-C-T | BY181455 | Y | Y | + | + | |||
15693034-C-A | 13581154-C-A | BY181613 | Y | Y | + | + | |||
15764775-T-C | 13652895-T-C | BY181620 | Y | Y | + | + | |||
15846887-G-A | 13735007-G-A | BY181627 | Y | Y | + | + | |||
16983198-G-T | 14871318-G-T | BY181749 | Y | Y | + | + | |||
17434999-C-T | 15323119-C-T | Y | Y | + | + | ||||
17590579-G-T | 15478699-G-T | BY181826 | Y | Y | + | + | |||
17711450-G-C | 15599570-G-C | BY181840 | Y | Y | + | + | |||
17767588-G-A | 15655708-G-A | BY181843 | Y | Y | + | + | |||
17780258-G-A | 15668378-G-A | BY181844 | Y | Y | + | + | |||
17883065-G-A | 15771185-G-A | BY181849 | Y | Y | + | + | |||
18045723-C-T | 15933843-C-T | BY181873 | Y | Y | + | + | |||
18088677-A-G | 15976797-A-G | BY181877 | Y | + | + | ||||
18155517-A-G | 16043637-A-G | Y | Y | ** | + | ||||
19090258-G-T | 16978378-G-T | BY181973 | Y | Y | + | + | |||
22087491-T-C | 19925605-T-C | BY182147 | Y | Y | + | + | |||
22490426-C-A | 20328540-C-A | BY53339 | DYZ19 | + | |||||
5997346-T-C | 6129305-T-C | FT78610 | + | ||||||
13269684-G-C | 11114008-G-C | FT442132 | + | ||||||
13497046-C-T | 11341370-C-T | + | |||||||
13890006-T-C | 11769300-T-C | FT79075 | Y | + | |||||
16723510-G-A | 14611630-G-A | FT79467 | Y | + | |||||
17221252-G-A | 15109372-G-A | FT79527 | Y | + | |||||
16749740-TTG-T | 14637860-TTG-T | 12×TG | * | ||||||
24620470-G-GACA | 22474323-G-GACA | P3_t2 | * | * | |||||
56842837-C-A | * | ||||||||
22299599-A-G | 20137713-A-G | DYZ19 | * | ||||||
20989908-CT-C | 18828022-CT-C | P4_Dst | 11×T | ** | |||||
13463087-C-A | 11307411-C-A | ** | |||||||
20893454-CA-C | 18731568-CA-C | P4_Dst | 10×A | ** | |||||
4902210-C-A | 5034169-C-A | ** | |||||||
16656658-C-T | 14544778-C-T | 14×T | ** | ||||||
15411308-C-CAA | 13299428-C-CAA | 30×A | ** | ||||||
58912874-A-T | 56677997-T-A | ** | |||||||
17056906-A-G | 14945026-A-G | ** | |||||||
23475764-A-G | 21313878-A-G | ** | |||||||
22227931-C-A | 20066045-C-A | DYZ19 | ** | ||||||
22361123-A-T | 20199237-A-T | DYZ19 | ** | ||||||
13839850-G-C | 11719144-G-C | DYZ17 | ** | ||||||
22427549-T-C | 20265663-T-C | DYZ19 | ** | ||||||
59013975-C-CTT | 56867828-C-CTT | 11×T | ** | ||||||
16431055-C-A | 14319175-C-A | ** | |||||||
19622095-G-T | 17510215-G-T | P5_Prx | ** | ||||||
27497074-C-CTT | 25350927-C-CTT | P1_Y2 | 14×T | ** | |||||
10683222-A-C | ** | ||||||||
9056674-G-A | ** | ||||||||
3252907-C-A | 3384866-C-A | ** | |||||||
5426379-TTTC-T | 5558338-TTTC-T | ** | |||||||
10809005-C-T | ** | ||||||||
23886958-A-AT | 21725072-A-AT | 10×T | ** | ||||||
11028255-C-T | ** | ||||||||
16221525-C-A | 14109645-C-A | ** | |||||||
10809081-G-T | ** | ||||||||
22962187-ATTT-A | 20800301-ATTT-A | 14×T | ** | ||||||
27456889-T-TA | 25310742-T-TA | P1_Y2 | ** | ||||||
22996012-C-CAA | 20834126-C-CAA | 18×A | ** | ||||||
26124460-G-C | 23978313-G-C | P1_Y1 | ** | ||||||
17056895-A-G | 14945015-A-G | ** | |||||||
10663108-C-G | ** | ||||||||
10663120-A-G | ** | ||||||||
10663123-G-C | ** | ||||||||
10663128-C-A | ** | ||||||||
10663148-T-C | ** | ||||||||
10663154-G-C | ** | ||||||||
16607951-C-A | 14496071-C-A | ** | |||||||
10989090-T-A | ** | ||||||||
6693506-C-A | 6825465-C-A | ** | |||||||
20850618-GT-G | 18688732-GT-G | P4_Dst | ** | ||||||
6330229-CA-C | 6462188-CA-C | IR3_Dst | ** | ||||||
10889503-A-T | ** | ||||||||
10889467-A-C | ** | ||||||||
13457676-C-T | 11302000-C-T | ** | |||||||
13457678-A-C | 11302002-A-C | ** | |||||||
10961420-C-G | ** | ||||||||
10980294-A-C | ** | ||||||||
10989108-ACACCACT-A | ** | ||||||||
10667891-A-G | ** | ||||||||
10667893-A-G | ** | ||||||||
21603939-A-C | 19442053-A-C | ** | |||||||
10895897-ACTCAG-A | ** | ||||||||
10666288-T-C | FT428623 | ** | |||||||
10926153-G-T | ** | ||||||||
10809092-G-C | ** | ||||||||
10980250-C-A | ** | ||||||||
10980285-C-A | ** | ||||||||
10925331-C-T | ** | ||||||||
10787932-C-A | ** | ||||||||
11030409-C-A | ** | ||||||||
10939674-C-T | ** | ||||||||
24013841-C-A | 21867694-C-A | ** | |||||||
19537901-CAAAAA-C | 17426021-CAAAAA-C | 17×A | ** | ||||||
13941635-C-A | 11820929-C-A | ** | |||||||
20872239-T-TC | 18710353-T-TC | P4_Dst | ** | ||||||
16309042-G-A | 14197162-G-A | ** | |||||||
16602623-C-A | 14490743-C-A | ** | |||||||
20975743-A-AC | 18813857-A-AC | P4_Dst | ** | ||||||
7044388-C-A | 7176347-C-A | ** | |||||||
19745021-A-C | 17633141-A-C | P5_Prx | ** | ||||||
28613187-C-A | 26467040-C-A | ** | |||||||
13223501-G-GGGA | 11067825-G-GGGA | ** | |||||||
5785430-C-A | 5917389-C-A | ** | |||||||
22204379-C-A | 20042493-C-A | ** | |||||||
4902477-G-T | 5034436-G-T | ** | |||||||
10630880-C-A | ** | ||||||||
10980242-A-T | ** | ||||||||
6267620-A-T | 6399579-A-T | IR3_Dst | ** | ||||||
13554717-C-A | 11399041-C-A | ** | |||||||
22164545-C-A | 20002659-C-A | ** | |||||||
10809094-G-A | ** | ||||||||
9112811-GA-G | ** | ||||||||
13944583-C-A | 11823877-C-A | ** | |||||||
15012296-C-CTT | 12900384-C-CTT | 17×T | ** | ||||||
10756203-A-T | ** | ||||||||
25524739-C-A | 23378592-C-A | P1_gr1 | ** | ||||||
13491605-C-A | 11335929-C-A | ** | |||||||
5189736-C-A | 5321695-C-A | ** | |||||||
15733777-C-A | 13621897-C-A | ** | |||||||
23475756-T-C | 21313870-T-C | ** | |||||||
23475776-A-C | 21313890-A-C | ** | |||||||
13460514-C-T | 11304838-C-T | ** | |||||||
3116358-C-A | 3248317-C-A | ** | |||||||
10961376-C-T | ** | ||||||||
4951600-C-A | 5083559-C-A | ** | |||||||
10765769-C-A | ** | ||||||||
10851153-T-C | ** | ||||||||
18631062-C-A | 16519182-C-A | ** | |||||||
5172292-C-A | 5304251-C-A | ** | |||||||
15011616-C-A | 12899704-C-A | ** | |||||||
10769444-G-GCATGC | ** | ||||||||
10889483-T-A | ** | ||||||||
10889487-C-A | ** | ||||||||
10889491-T-G | ** | ||||||||
10889504-T-C | ** | ||||||||
19233028-T-C | 17121148-T-C | ** | |||||||
16652152-T-C | 14540272-T-C | ** | |||||||
7723948-C-CTTT | 7855907-C-CTTT | 25×T | ** | ||||||
10756207-C-T | ** | ||||||||
15201601-C-A | 13089687-C-A | ** | |||||||
23047508-C-A | 20885622-C-A | ** | |||||||
14766597-C-CT | 12654666-C-CT | 8×T | ** | ||||||
23475766-G-A | 21313880-G-A | ** | |||||||
23475775-A-G | 21313889-A-G | ** | |||||||
23475780-A-G | 21313894-A-G | ** | |||||||
23475786-C-G | 21313900-C-G | ** | |||||||
21996184-G-T | 19834298-G-T | ** | |||||||
23256001-C-A | 21094115-C-A | ** | |||||||
20473622-A-T | 18311736-A-T | P5_Dst | 9×GAT | ** | |||||
16354637-C-A | 14242757-C-A | ** | |||||||
15688968-C-A | 13577088-C-A | FT180436 | ** | ||||||
13457691-C-T | 11302015-C-T | ** | |||||||
6267582-A-T | 6399541-A-T | IR3_Dst | ** | ||||||
10683221-C-T | ** | ||||||||
9079456-G-T | 9241847-G-T | ** | |||||||
17380638-C-A | 15268758-C-A | ** | |||||||
24205612-C-A | 22059465-C-A | P3_b1 | ** | ||||||
10809149-A-G | ** | ||||||||
10981906-G-T | ** | ||||||||
3501238-C-A | 3633197-C-A | ** | |||||||
14055039-C-A | 11934333-C-A | ** | |||||||
16629372-C-A | 14517492-C-A | ** | |||||||
10939665-T-G | ** | ||||||||
8970837-T-A | 9133228-T-A | ** | |||||||
10809097-T-C | ** | ||||||||
10809109-G-T | ** | ||||||||
10809122-C-T | ** | ||||||||
10809127-C-T | ** | ||||||||
10809132-C-T | ** | ||||||||
6403623-G-A | 6535582-G-A | FTB20236 | ** | ||||||
5447132-C-A | 5579091-C-A | ** | |||||||
7984380-C-A | 8116339-C-A | ** | |||||||
8075785-C-A | 8207744-C-A | ** | |||||||
10672226-T-C | ** | ||||||||
18381295-A-C | 16269415-A-C | P6_Prx | ** | ||||||
21639064-C-A | 19477178-C-A | ** | |||||||
16342181-C-A | 14230301-C-A | ** | |||||||
10809079-A-T | ** | ||||||||
10833649-C-A | ** | ||||||||
21030989-GT-G | 18869103-GT-G | P4_Dst | ** | ||||||
13463091-G-A | 11307415-G-A | ** | |||||||
19393037-C-A | 17281157-C-A | ** | |||||||
10959123-C-A | ** | ||||||||
23475802-G-A | 21313916-G-A | ** | |||||||
23475807-T-C | 21313921-T-C | ** | |||||||
17561453-C-A | 15449573-C-A | ** | |||||||
13880175-C-A | 11759469-C-A | ** | |||||||
11676582-C-A | DYZ17 | ** | |||||||
7099323-C-T | 7231282-C-T | ** | |||||||
10889462-C-T | ** | ||||||||
10889481-G-C | ** | ||||||||
10889499-T-G | ** | ||||||||
22991213-C-A | 20829327-C-A | ** | |||||||
13728473-T-A | 11572797-T-A | DYZ17 | ** | ||||||
14605196-C-A | 12493398-C-A | ** | |||||||
8353117-G-A | 8485076-G-A | ** | |||||||
14789438-C-G | 12677509-C-G | ** | |||||||
10864667-T-C | ** | ||||||||
19558393-C-A | 17446513-C-A | ** | |||||||
10998691-C-A | ** | ||||||||
21410230-C-A | 19248344-C-A | ** | |||||||
10959105-G-C | ** | ||||||||
10785042-C-T | ** | ||||||||
16171090-C-A | 14059210-C-A | ** | |||||||
27596040-T-G | 25449893-T-G | P1_Y2 | ** | ||||||
10959106-T-C | ** | ||||||||
10959116-A-C | ** | ||||||||
10997537-C-A | ** | ||||||||
15127808-C-A | 13015895-C-A | ** | |||||||
17103324-G-T | 14991444-G-T | ** | |||||||
16988807-C-A | 14876927-C-A | ** | |||||||
20448941-C-CACAT | 18287055-C-CACAT | P5_Dst | ** | ||||||
20473593-A-G | 18311707-A-G | P5_Dst | ** | ||||||
10824306-C-A | ** | ||||||||
26015325-C-CATAT | 23869178-C-CATAT | P1_Y1 | ** | ||||||
18374210-CT-C | 16262330-CT-C | P6_Prx | ** | ||||||
3042771-T-G | 3174730-T-G | ** | |||||||
3228851-C-A | 3360810-C-A | ** | |||||||
3413712-C-A | 3545671-C-A | ** | |||||||
3505867-C-T | 3637826-C-T | ** | |||||||
3648565-C-A | 3780524-C-A | ** | |||||||
3660541-G-T | 3792500-G-T | ** | |||||||
3698873-G-T | 3830832-G-T | ** | |||||||
3918437-C-A | 4050396-C-A | ** | |||||||
3949097-C-T | 4081056-C-T | ** | |||||||
4003705-C-A | 4135664-C-A | ** | |||||||
4077634-C-T | 4209593-C-T | ** | |||||||
4100311-G-T | 4232270-G-T | ** | |||||||
4442952-C-A | 4574911-C-A | ** | |||||||
4671798-T-A | 4803757-T-A | ** | |||||||
4985744-C-A | 5117703-C-A | ** | |||||||
4996006-T-A | 5127965-T-A | ** | |||||||
5442130-G-T | 5574089-G-T | ** | |||||||
5538464-C-A | 5670423-C-A | ** | |||||||
5682103-G-A | 5814062-G-A | ** | |||||||
5859094-T-C | 5991053-T-C | ** | |||||||
5900342-C-A | 6032301-C-A | ** | |||||||
6010464-C-A | 6142423-C-A | ** | |||||||
6019736-G-T | 6151695-G-T | ** | |||||||
6070701-G-T | 6202660-G-T | ** | |||||||
6352873-T-A | 6484832-T-A | ** | |||||||
6478589-G-A | 6610548-G-A | ** | |||||||
7021741-C-A | 7153700-C-A | ** | |||||||
7029630-A-G | 7161589-A-G | ** | |||||||
7099335-A-AC | 7231294-A-AC | ** | |||||||
7110653-T-G | 7242612-T-G | ** | |||||||
7138956-T-G | 7270915-T-G | ** | |||||||
7314419-A-C | 7446378-A-C | ** | |||||||
7323004-C-A | 7454963-C-A | ** | |||||||
7418469-A-T | 7550428-A-T | ** | |||||||
8002346-AT-A | 8134305-AT-A | ** | |||||||
8003172-G-T | 8135131-G-T | ** | |||||||
8712139-C-A | 8844098-C-A | ** | |||||||
8786645-A-G | 8918604-A-G | ** | |||||||
9456147-C-A | 9618538-C-A | ** | |||||||
9618139-C-A | 9780530-C-A | IR3_Prx | ** | ||||||
9629368-T-C | 9791759-T-C | IR3_Prx | ** | ||||||
10011021-G-T | 10173412-G-T | ** | |||||||
10035998-C-A | 10198389-C-A | ** | |||||||
10666278-C-T | ** | ||||||||
10690667-A-G | ** | ||||||||
10756021-C-A | ** | ||||||||
10790035-T-C | ** | ||||||||
10793716-C-A | ** | ||||||||
10793745-C-A | ** | ||||||||
10808268-T-C | ** | ||||||||
10809095-T-C | ** | ||||||||
10809099-T-G | ** | ||||||||
10809152-C-A | ** | ||||||||
10822141-C-A | ** | ||||||||
10837264-C-A | ** | ||||||||
10843135-C-A | ** | ||||||||
10875196-A-C | ** | ||||||||
10875244-C-A | ** | ||||||||
10882350-C-A | ** | ||||||||
10890326-C-A | ** | ||||||||
10896348-C-A | ** | ||||||||
10926138-T-TTCCAC | ** | ||||||||
10926356-C-A | ** | ||||||||
10959158-T-C | ** | ||||||||
10964557-C-A | ** | ||||||||
11018405-C-A | ** | ||||||||
11020257-C-A | ** | ||||||||
11034897-G-T | ** | ||||||||
13318964-A-C | 11163288-A-C | ** | |||||||
13422188-G-T | 11266512-G-T | ** | |||||||
13728485-G-T | 11572809-G-T | DYZ17 | ** | ||||||
11651408-A-G | DYZ17 | ** | |||||||
11662435-C-T | DYZ17 | ** | |||||||
11662439-T-C | DYZ17 | ** | |||||||
11662443-A-G | DYZ17 | ** | |||||||
11662452-T-A | DYZ17 | ** | |||||||
11664404-C-A | DYZ17 | ** | |||||||
13859184-G-T | 11738478-G-T | DYZ17 | ** | ||||||
13941025-G-A | 11820319-G-A | ** | |||||||
13974075-G-T | 11853369-G-T | ** | |||||||
14296444-C-A | 12175738-C-A | ** | |||||||
14539327-C-A | 12427528-C-A | ** | |||||||
14591790-C-A | 12479990-C-A | ** | |||||||
14593689-C-A | 12481889-C-A | ** | |||||||
14596122-C-A | 12484322-C-A | ** | |||||||
14747454-G-A | 12635523-G-A | ** | |||||||
14926397-A-G | 12814462-A-G | ** | |||||||
15061712-A-G | 12949804-A-G | ** | |||||||
15369162-T-C | 13257282-T-C | ** | |||||||
16028685-C-A | 13916805-C-A | ** | |||||||
16274161-G-A | 14162281-G-A | ** | |||||||
16323763-G-T | 14211883-G-T | ** | |||||||
16354608-C-A | 14242728-C-A | ** | |||||||
16412332-C-T | 14300452-C-T | ** | |||||||
16616726-C-A | 14504846-C-A | ** | |||||||
16624905-C-A | 14513025-C-A | ** | |||||||
17159674-G-T | 15047794-G-T | ** | |||||||
17363100-C-A | 15251220-C-A | ** | |||||||
17485221-C-A | 15373341-C-A | ** | |||||||
17737578-A-G | 15625698-A-G | ** | |||||||
18185979-A-G | 16074099-A-G | ** | |||||||
18189442-C-A | 16077562-C-A | ** | |||||||
19507222-C-A | 17395342-C-A | ** | |||||||
19740661-A-G | 17628781-A-G | P5_Prx | ** | ||||||
19895439-C-A | 17783559-C-A | P5_Prx | ** | ||||||
20028145-T-G | 17916265-T-G | P5_Prx | ** | ||||||
20028156-T-G | 17916276-T-G | P5_Prx | ** | ||||||
20028184-T-G | 17916304-T-G | P5_Prx | ** | ||||||
20028188-T-G | 17916308-T-G | P5_Prx | ** | ||||||
20028191-C-G | 17916311-C-G | P5_Prx | ** | ||||||
20028194-T-G | 17916314-T-G | P5_Prx | ** | ||||||
20028206-T-G | 17916326-T-G | P5_Prx | ** | ||||||
20273574-TGAAAAAG-T | 18111688-TGAAAAAG-T | P5_Dst | ** | ||||||
20802670-T-C | 18640784-T-C | P4_Gap | ** | ||||||
20809848-A-C | 18647962-A-C | P4_Gap | ** | ||||||
21097203-C-A | 18935317-C-A | ** | |||||||
21514103-C-A | 19352217-C-A | ** | |||||||
21565972-C-A | 19404086-C-A | ** | |||||||
22076224-A-G | 19914338-A-G | ** | |||||||
22168726-G-T | 20006840-G-T | ** | |||||||
22584314-T-G | 20422428-T-G | ** | |||||||
22617226-C-A | 20455340-C-A | FTB83914 | ** | ||||||
23225484-G-A | 21063598-G-A | ** | |||||||
23311117-C-A | 21149231-C-A | ** | |||||||
23881896-A-G | 21720010-A-G | ** | |||||||
24303367-C-A | 22157220-C-A | P3_t1 | ** | ||||||
24450659-C-A | 22304512-C-A | ** | |||||||
24595272-T-C | 22449125-T-C | P3_t2 | ** | ** | |||||
25860997-ATT-A | 23714850-ATT-A | P1_Y1 | ** | ||||||
25872442-T-G | 23726295-T-G | P1_Y1 | ** | ||||||
25872450-A-G | 23726303-A-G | P1_Y1 | ** | ||||||
25872492-A-G | 23726345-A-G | P1_Y1 | ** | ||||||
25872497-A-G | 23726350-A-G | P1_Y1 | ** | ||||||
25934542-T-TG | 23788395-T-TG | P1_Y1 | ** | ||||||
26152065-TTCTTTCTTTCTC-T | 24005918-TTCTTTCTTTCTC-T | P1_Y1 | ** | ||||||
27232102-G-A | 25085955-G-A | P1_g3 | ** | ||||||
27947850-GAAACAAATT-G | 25801703-GAAACAAATT-G | P1_Y2 | ** | ||||||
28604550-C-A | 26458403-C-A | ** | |||||||
28765003-A-C | 26618856-A-C | ** | |||||||
56727794-G-C | ** | ||||||||
20473642-A-G | 18311756-A-G | P5_Dst | ** | ||||||
28420682-A-AGT | 26274535-A-AGT | P1_gr2 | ** | ||||||
27901267-A-AT | 25755120-A-AT | P1_Y2 | ** | ||||||
6213675-C-G | 6345634-C-G | IR3_Dst | ** | ||||||
7217765-G-GT | 7349724-G-GT | ** | |||||||
7373476-C-T | 7505435-C-T | ** | |||||||
9657404-CAA-C | 9819795-CAA-C | IR3_Prx | 12×A | ** | |||||
9657531-CT-C | 9819922-CT-C | IR3_Prx | 9×T | ** | |||||
10785041-A-C | ** | ||||||||
16101323-A-C | 13989443-A-C | P8_Prx | ** | ||||||
19765098-T-C | 17653218-T-C | P5_Prx | ** | ||||||
20473619-G-GCT | 18311733-G-GCT | P5_Dst | ** | ||||||
20473624-A-ATAG | 18311738-A-ATAG | P5_Dst | ** | ||||||
20473630-A-G | 18311744-A-G | P5_Dst | ** | ||||||
20473635-G-A | 18311749-G-A | P5_Dst | ** | ||||||
23391647-A-G | 21229761-A-G | ** | |||||||
24611445-T-G | 22465298-T-G | P3_t2 | ** | ||||||
26398379-T-TC | 24252232-T-TC | P1_Y1 | ** | ||||||
28057423-T-C | 25911276-T-C | P1_Y2 | ** | ||||||
5163631-T-C | 5295590-T-C | *** | |||||||
13258558-C-CTT | 11102882-C-CTT | 20×T | *** | ||||||
13475803-T-G | 11320127-T-G | *** | |||||||
5403266-CTT-C | 5535225-CTT-C | 15×T | *** | ||||||
11026055-C-T | *** | ||||||||
58883633-G-A | 56707238-C-T | *** | |||||||
10772454-T-A | *** | ||||||||
21562947-GTTT-G | 19401061-GTTT-G | 16×T | *** | ||||||
10893947-ATTCTC-A,ATTCCATTCTC | *** | ||||||||
10750778-T-C | FT91615 | *** | |||||||
10663158-G-C | *** | ||||||||
10663166-C-A | *** | ||||||||
11004441-A-G | *** | ||||||||
10861258-C-A | *** | ||||||||
18997574-C-A | 16885694-C-A | *** | |||||||
9034655-C-CAA | 9197046-C-CAA | 12×A | *** | ||||||
10667018-C-G | *** | ||||||||
14940073-CA-C,CAA | 12828147-CA-C,CAA | 15×A | *** | ||||||
21084353-G-A | 18922467-G-A | F23866 | *** | ||||||
56830301-TCCATTCCATG-T | *** | ||||||||
22849512-G-T | 20687626-G-T | *** | |||||||
10693929-CATTCA-C,CATTCC | *** | ||||||||
15180666-C-A | 13068752-C-A | *** | |||||||
10781325-G-T | *** | ||||||||
13839793-A-G | 11719087-A-G | DYZ17 | *** | ||||||
22768348-TAAA-T | 20606462-TAAA-T | 17×A | *** | ||||||
14310448-G-T | 12189742-G-T | *** | |||||||
28736219-C-A | 26590072-C-A | *** | |||||||
13459474-C-A | 11303798-C-A | *** | |||||||
10869896-G-T | *** | ||||||||
11676876-C-A | DYZ17 | *** | |||||||
11666040-C-A | DYZ17 | *** | |||||||
10866632-C-A | *** | ||||||||
58855985-T-A | 56734886-A-T | *** | |||||||
56850092-C-A | *** | ||||||||
20063941-TAAAA-T | 17952061-TAAAA-T | P5_Gap | 18×A | *** | |||||
10780992-G-T | *** | ||||||||
10841983-C-T | FT91843 | *** | |||||||
7131830-C-A | 7263789-C-A | *** | |||||||
10858937-C-A | *** | ||||||||
15477291-CAAA-C,CAA | 13365411-CAAA-C,CAA | 18×A | *** | ||||||
18425123-C-A | 16313243-C-A | P6_Gap | *** | ||||||
56839216-C-T | *** | ||||||||
11004431-A-G | *** | ||||||||
10656309-C-CGG,CGGCTC | *** | ||||||||
13457964-TC-T | 11302288-TC-T | *** | |||||||
10799508-AC-A,GC | *** | ||||||||
10927765-G-T | *** | ||||||||
10938424-C-A | *** | ||||||||
14385243-G-T | 12264539-G-T | *** | |||||||
10982465-C-A | *** | ||||||||
10856717-C-A | *** | ||||||||
13449042-GCA-G | 11293366-GCA-G | *** | |||||||
8321435-C-CTTT | 8453394-C-CTTT | 15×T | *** | ||||||
3815196-G-T | 3947155-G-T | *** | |||||||
7199581-C-T | 7331540-C-T | *** | |||||||
9936187-C-A | 10098578-C-A | *** | |||||||
10869207-C-A | *** | ||||||||
10888034-TTCCAT-T,TTCCAG | *** | ||||||||
10927238-C-A,T | *** | ||||||||
10992840-T-C | *** | ||||||||
11014888-C-A | *** | ||||||||
13475804-A-T | 11320128-A-T | *** | |||||||
13671350-G-A | 11515674-G-A | DYZ17 | *** | ||||||
13735401-G-C | 11579725-G-C | DYZ17 | *** | ||||||
11656389-G-T | DYZ17 | *** | |||||||
14925764-C-A | 12813829-C-A | *** | |||||||
15057738-AT-A,ATTT | 12945830-AT-A,ATTT | 18×T | *** | ||||||
15740563-C-A | 13628683-C-A | *** | |||||||
16592532-C-A | 14480652-C-A | *** | |||||||
16703315-G-T | 14591435-G-T | *** | |||||||
17285034-C-A | 15173154-C-A | *** | |||||||
19218409-A-G | 17106529-A-G | *** | |||||||
22542483-C-A | 20380597-C-A | *** | |||||||
23294364-A-G | 21132478-A-G | *** | |||||||
23294374-T-C | 21132488-T-C | *** | |||||||
23352228-T-A | 21190342-T-A | *** | |||||||
5388261-TAA-T,TA | 5520220-TAA-T,TA | 18×A | *** | ||||||
22537275-CAA-C,CA | 20375389-CAA-C,CA | 15×A | *** | ||||||
7510235-T-G | 7642194-T-G | *** | |||||||
7989472-T-G | 8121431-T-G | *** | |||||||
11014343-A-C | *** | ||||||||
23952613-A-G | 21806466-A-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.