Lindgren

BigY2: 677707
MDKA Birth: Sweden

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > BY4086 > FGC17436 > Z17693 > FGC73657 > FGC59344

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
677707
28817273-G-A 26671126-G-A A*
18329408-C-T 16217528-C-T P6_Prx A*
19953962-A-C 17842082-A-C P5_Prx A*
20759195-G-A 18597309-G-A P4_Prx A*
22282451-G-C 20120565-G-C DYZ19 A*
7921535-G-T 8053494-G-T BY2899ZS2874 YY9×T+
23125539-G-A 20963653-G-A Y128031Y129297 YY+
21429551-G-A 19267665-G-A Y106454 YY+
6733187-T-C 6865146-T-C BY60935 YY+
7635159-A-T 7767118-A-T BY66417 YY+
7840805-A-G 7972764-A-G BY178172 YY+
8093761-GA-G 8225720-GA-G +
8710978-T-C 8842937-T-C BY178373 YY+
8819394-T-G 8951353-T-G BY178394 YY+
9772040-T-G 9934431-T-G BY178524 Y+
9821530-C-G 9983921-C-G BY178531 YY+
10007056-T-A 10169447-T-A BY82755 Y+
14902010-A-G 12790077-A-G BY178736 YY+
16049544-A-T 13937664-A-T BY178913 YY+
16481768-A-C 14369888-A-C BY108099 YY+
17321607-T-G 15209727-T-G BY179156 YY+
17921633-G-A 15809753-G-A BY118456 YY+
21618596-T-C 19456710-T-C BY179707 YY+
21813181-C-T 19651295-C-T YY+
22228819-G-T 20066933-G-T FT453182 DYZ19 +
22474302-G-C 20312416-G-C FT459596 DYZ19 +
23163888-T-C 21002002-T-C BY143553 Y+
23655319-G-C 21493433-G-C BY147118 Y+
22287650-G-T 20125764-G-T DYZ19 *
22319208-A-T 20157322-A-T BY217416 DYZ19 *
13712657-G-C 11556981-G-C **
13453439-G-C 11297763-G-C **
19740989-T-A 17629109-T-A P5_Prx **
5359664-G-T 5491623-G-T **
13467068-T-A 11311392-T-A **
5448530-CTG-C 5580489-CTG-C **
28819290-C-G 26673143-C-G **
13467039-T-G 11311363-T-G **
4416867-C-CAA 4548826-C-CAA 17×A**
22775007-G-T 20613121-G-T **
14392171-GAA-G 12271467-GAA-G 16×A**
10682511-C-G **
13489191-G-C 11333515-G-C **
28793783-G-T 26647636-G-T **
21068485-T-C 18906599-T-C MF1630 **
11015222-C-T **
3284994-G-T 3416953-G-T **
18733562-A-AT 16621682-A-AT 9×T**
5976793-A-AGT 6108752-A-AGT 8×GT**
10682565-TC-T **
15410565-T-C 13298685-T-C **
15410566-G-A 13298686-G-A **
15410570-C-G 13298690-C-G **
10988609-C-G **
21189668-CAAAAA-C 19027782-CAAAAA-C 23×A**
10776019-C-A **
14036081-C-A 11915375-C-A **
10763086-C-T **
11015132-G-T **
16583298-T-G 14471418-T-G **
11015131-T-A **
22426996-G-T 20265110-G-T DYZ19 **
10807293-T-A **
8878797-A-T 9010756-A-T **
19622093-A-T 17510213-A-T P5_Prx **
5824839-C-A 5956798-C-A **
10916335-A-G **
10895827-A-T **
28819314-T-C 26673167-T-C **
16057305-C-A 13945425-C-A **
10763132-A-T **
11015171-A-ATTCTG **
10790261-C-T FT91712 **
11011847-T-C **
10878336-C-T **
28791128-C-G 26644981-C-G **
5627811-C-A 5759770-C-A **
6233728-A-ACT 6365687-A-ACT IR3_Dst **
10657395-C-T **
7385894-C-A 7517853-C-A **
11015242-C-T **
4472336-A-C 4604295-A-C **
14557797-T-G 12445998-T-G **
13454748-TTTCCA-T 11299072-TTTCCA-T 4×TTCCA**
16421970-C-A 14310090-C-A **
2905857-C-CTT 3037816-C-CTT 15×T**
13453281-T-C 11297605-T-C **
13453283-TGATTC-T 11297607-TGATTC-T **
20510994-AC-A 18349108-AC-A P5_Dst **
15218954-G-A 13107040-G-A **
10682497-C-A **
10682537-C-T **
10682546-C-CCACGA **
10682578-A-G **
21049206-C-A 18887320-C-A **
10687230-C-G **
10878289-C-T **
4159988-C-A 4291947-C-A **
16030105-C-A 13918225-C-A **
10926647-C-G **
20229558-AC-A 18067672-AC-A P5_Dst **
16621495-G-T 14509615-G-T **
11003745-C-A **
11011826-G-A FT393621 **
11011843-T-A **
17213348-C-A 15101468-C-A **
4902414-G-T 5034373-G-T **
19927007-T-A 17815127-T-A P5_Prx **
4932034-G-T 5063993-G-T **
13698473-C-G 11542797-C-G **
10794279-C-A **
18738682-C-A 16626802-C-A A18291 **
28759678-C-A 26613531-C-A **
19168758-C-A 17056878-C-A **
18035912-C-A 15924032-C-A **
22775069-C-G 20613183-C-G **
22775071-A-G 20613185-A-G **
9987683-C-A 10150074-C-A **
3111113-C-A 3243072-C-A **
13228190-C-A 11072514-C-A **
15619107-C-A 13507227-C-A **
17503944-C-A 15392064-C-A **
19318235-A-G 17206355-A-G **
10689062-C-T **
18856241-C-A 16744361-C-A **
10878339-C-A **
22335160-C-A 20173274-C-A DYZ19 **
10878340-A-C **
13586101-C-A 11430425-C-A FT271004 **
14859067-C-A 12747133-C-A **
7256047-AT-A 7388006-AT-A **
14074048-C-A 11953342-C-A **
6956516-C-A 7088475-C-A **
22775003-T-C 20613117-T-C **
13227911-C-A 11072235-C-A **
14557800-A-G 12446001-A-G **
19479386-C-A 17367506-C-A **
10802645-C-A **
11015179-C-A **
10692496-G-T **
10961458-TTCCTCA-T **
15355196-C-A 13243315-C-A **
20490155-A-AG 18328269-A-AG P5_Dst **
11015198-T-A **
56822540-T-C **
7444155-C-A 7576114-C-A **
6929432-C-A 7061391-C-A **
11038231-C-A **
16607672-C-A 14495792-C-A **
13466080-C-G 11310404-C-G **
10764604-C-G **
13846298-TA-T 11725592-TA-T **
7199960-C-A 7331919-C-A **
11015193-T-A **
10794271-C-G **
16605628-C-A 14493748-C-A **
16889884-C-A 14778004-C-A **
20084456-C-CTTTCT 17972576-C-CTTTCT P5_Dst 7×TTTCT**
10878290-A-T **
16952595-C-A 14840715-C-A **
22974115-GCAA-G 20812229-GCAA-G **
19318229-A-G 17206349-A-G **
19318241-C-G 17206361-C-G **
16629393-C-CT 14517513-C-CT 9×T**
13466050-G-C 11310374-G-C **
10993046-C-A **
13974181-G-T 11853475-G-T **
11015180-C-G **
10769573-T-A **
10895817-A-AC **
13489438-C-T 11333762-C-T **
13489439-A-G 11333763-A-G **
6808177-C-A 6940136-C-A **
19146524-C-A 17034644-C-A **
7135296-C-A 7267255-C-A **
10764584-C-A **
22052526-C-A 19890640-C-A **
10764566-A-ACTCTT **
10764575-C-CTGTTG **
10764585-C-CTTTATATTGCATTTA **
11022931-C-A FT393990 **
13466083-A-T 11310407-A-T **
7277532-C-A 7409491-C-A **
11015227-T-TC **
13453253-C-T 11297577-C-T **
10895810-C-A **
17588711-C-A 15476831-C-A **
4070807-C-A 4202766-C-A **
15865934-C-A 13754054-C-A **
13720573-G-T 11564897-G-T **
19524610-C-A 17412730-C-A **
16777760-C-A 14665880-C-A **
13453261-T-C 11297585-T-C **
5829551-C-A 5961510-C-A **
16491796-C-A 14379916-C-A **
23802217-C-T 21640331-C-T **
22950253-T-G 20788367-T-G **
15748054-G-T 13636174-G-T **
6944986-A-C 7076945-A-C **
10689019-A-T **
17632570-GTTTTTT-G 15520690-GTTTTTT-G 22×T**
16896454-G-T 14784574-G-T **
26222512-T-A 24076365-T-A P1_Y1 **
23439019-C-A 21277133-C-A **
2701349-C-A 2833308-C-A **
3274451-T-A 3406410-T-A **
3500989-TCCAGAC-T 3632948-TCCAGAC-T **
3865750-A-G 3997709-A-G **
3995177-A-G 4127136-A-G **
4077685-C-T 4209644-C-T FT92787 **
4353809-G-A 4485768-G-A **
4711861-T-C 4843820-T-C **
4755905-T-G 4887864-T-G **
5191038-G-A 5322997-G-A **
5199824-C-A 5331783-C-A **
5205381-C-A 5337340-C-A **
5216356-C-A 5348315-C-A **
5332882-C-A 5464841-C-A **
5783179-C-A 5915138-C-A **
6028530-T-G 6160489-T-G **
6037851-T-C 6169810-T-C FT126222 **
6344217-A-C 6476176-A-C **
6592396-T-C 6724355-T-C **
6714601-A-C 6846560-A-C **
6773512-T-G 6905471-T-G **
6992508-C-T 7124467-C-T **
7109405-GA-G 7241364-GA-G **
7197449-C-T 7329408-C-T **
7709576-T-G 7841535-T-G **
7709586-G-T 7841545-G-T **
8273874-T-G 8405833-T-G **
9056935-CA-C **
9123173-G-T **
9040782-G-A 9203173-G-A **
9070047-C-A 9232438-C-A **
9887304-C-T 10049695-C-T **
10012689-A-C 10175080-A-C **
10025127-T-G 10187518-T-G **
10678566-T-G **
10689031-T-TGCAATCCACG **
10692499-GTCCAC-G **
10756181-C-A **
10794293-C-T **
10878306-C-T **
10878331-C-T **
10958297-T-A **
10980248-T-G **
11001481-T-A **
11015136-A-C **
13233145-C-T 11077469-C-T **
13453268-C-G 11297592-C-G **
13453339-C-CCCTGT 11297663-C-CCCTGT **
13453343-C-CGGGTT 11297667-C-CGGGTT **
13453425-A-CCTACC 11297749-A-CCTACC **
13466036-C-T 11310360-C-T **
13466096-T-G 11310420-T-G **
13467047-T-A 11311371-T-A **
13473382-A-T 11317706-A-T **
13476795-A-C 11321119-A-C **
13484025-T-A 11328349-T-A **
13486256-A-C 11330580-A-C **
13489473-C-A 11333797-C-A **
13489489-C-G 11333813-C-G **
13505435-C-A 11349759-C-A **
13522062-T-G 11366386-T-G **
13553374-C-A 11397698-C-A **
13720584-A-T 11564908-A-T **
11656149-G-T **
13846295-G-GC 11725589-G-GC **
13883028-C-A 11762322-C-A FT168260 **
13907577-G-A 11786871-G-A **
13945472-C-T 11824766-C-T **
14068500-C-T 11947794-C-T **
14142203-C-A 12021497-C-A **
14420283-C-A 12299558-C-A **
14463609-A-C 12342882-A-C **
14557798-G-A 12445999-G-A **
14568767-T-C 12456967-T-C **
15092697-C-T 12980786-C-T **
15104900-C-A 12992988-C-A **
15109224-C-A 12997311-C-A **
15218965-T-C 13107051-T-C **
15377189-C-T 13265309-C-T **
15422963-G-T 13311083-G-T **
15684251-C-A 13572371-C-A **
15792968-A-C 13681088-A-C **
15922191-G-T 13810311-G-T **
16095780-T-G 13983900-T-G **
16445631-C-A 14333751-C-A **
16491805-C-A 14379925-C-A **
16515991-A-T 14404111-A-T **
16679840-C-A 14567960-C-A **
16896457-G-T 14784577-G-T **
16932903-G-A 14821023-G-A **
17499005-C-A 15387125-C-A **
17588660-T-G 15476780-T-G **
17673043-C-A 15561163-C-A **
17860036-C-G 15748156-C-G **
18174830-T-G 16062950-T-G **
18191418-T-G 16079538-T-G **
18232320-C-T 16120440-C-T BY121032 **
18611745-A-C 16499865-A-C **
18756500-G-A 16644620-G-A BY123663 **
18780556-A-T 16668676-A-T **
18930427-A-C 16818547-A-C **
19055283-G-T 16943403-G-T **
19138709-G-C 17026829-G-C **
19268377-T-A 17156497-T-A **
19310364-T-G 17198484-T-G **
19310368-T-G 17198488-T-G **
19310384-T-G 17198504-T-G **
19668917-C-A 17557037-C-A P5_Prx **
19740978-T-A 17629098-T-A P5_Prx **
20685195-G-T 18523309-G-T P4_Prx **
20959438-A-T 18797552-A-T FT452892 P4_Dst 11×T**
21153938-A-C 18992052-A-C **
21162381-C-A 19000495-C-A **
21248095-C-G 19086209-C-G **
21307249-A-C 19145363-A-C **
21353337-G-T 19191451-G-T FT127323 **
21427078-C-A 19265192-C-A **
21525681-G-T 19363795-G-T **
21554465-T-A 19392579-T-A **
21624825-C-A 19462939-C-A **
21681519-T-A 19519633-T-A **
21952200-C-T 19790314-C-T **
22660298-T-C 20498412-T-C BY139837 **
22774988-C-T 20613102-C-T **
22775014-GAAGGTGGT-G 20613128-GAAGGTGGT-G **
22775031-C-T 20613145-C-T FTA41698 **
22775032-A-G 20613146-A-G **
22775044-G-A 20613158-G-A FT182495 **
22775050-A-C 20613164-A-C **
22775050-A-ATAGT 20613164-A-ATAGT **
22775085-A-C 20613199-A-C **
22836737-C-T 20674851-C-T **
22855162-T-C 20693276-T-C **
22995519-C-T 20833633-C-T BY142213 **
23186275-T-G 21024389-T-G **
24013838-AACCAAAGACTATATATATATATATATATAT-A 21867691-AACCAAAGACTATATATATATATATATATAT-A **
24343471-G-A 22197324-G-A P3_t1 **
24378645-C-A 22232498-C-A **
24403088-T-G 22256941-T-G **
24475125-A-C 22328978-A-C **
25312633-C-A 23166486-C-A P2_r1 **
26060216-GA-G 23914069-GA-G P1_Y1 **
26807398-A-C 24661251-A-C P1_g2 **
27757804-AC-A 25611657-AC-A P1_Y2 **
27794681-T-TAC 25648534-T-TAC P1_Y2 **
27872542-T-G 25726395-T-G P1_Y2 **
28080680-G-T 25934533-G-T P1_Y2 **
28484402-G-A 26338255-G-A **
28485814-T-G 26339667-T-G **
28569820-C-A 26423673-C-A **
28761221-A-C 26615074-A-C **
28788071-AGGAGT-A 26641924-AGGAGT-A **
28819307-A-T 26673160-A-T **
56823109-A-G **
56827559-T-G **
56858667-A-C **
36010-A-T **
14927229-A-C 12815294-A-C ***
7029456-CCT-C 7161415-CCT-C ***
8020244-G-A 8152203-G-A ***
9398526-C-A 9560917-C-A BY18340 ***
9398534-T-C 9560925-T-C F1540 ***
13462091-A-G 11306415-A-G ***
56826538-C-T ***
21623812-G-T 19461926-G-T FT6148 25×T***
18253122-GATAT-G 16141242-GATAT-G 9×AT***
16431229-C-CAA 14319349-C-CAA 15×A***
13228727-C-A 11073051-C-A ***
22617250-C-A 20455364-C-A ***
56832951-TTGCATTCCCT-T,TTACATTCCCC ***
13448302-T-G 11292626-T-G ***
2775609-T-C 2907568-T-C ***
5688191-A-AT 5820150-A-AT ***
6694057-C-A 6826016-C-A ***
7079366-C-A 7211325-C-A ***
10022869-C-A 10185260-C-A ***
13194907-T-C 11039231-T-C ***
13896486-C-A 11775780-C-A ***
13941363-T-C 11820657-T-C ***
14266931-C-A 12146225-C-A ***
14283217-C-T 12162511-C-T FGC1392 ***
14711660-C-A 12599727-C-A ***
15374441-GTTTT-G,GTT 13262561-GTTTT-G,GTT 20×T***
16427833-G-T 14315953-G-T ***
16427847-C-T 14315967-C-T ***
18867243-G-A 16755363-G-A ***
18891950-C-A 16780070-C-A ***
19423152-TTTC-T 17311272-TTTC-T ***
21816778-C-A 19654892-C-A ***
28583498-G-A 26437351-G-A FT103404 ***
28773501-G-A 26627354-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.