Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Blocks	Names	Region	McDonald BED	combBED	STR	BigY2 N112516
22420156-C-A	20258270-C-A			DYZ19				A+
16121891-T-C	14010011-T-C			P8_Prx				A+
16144599-A-G	14032719-A-G			P8_Dst				A+
22310497-C-A	20148611-C-A			DYZ19				A+
24245844-C-T	22099697-C-T			P3_b1				A+
23720433-T-TA	21558547-T-TA						15×A	A*
20629832-G-GT	18467946-G-GT			P4_Prx			9×T	A*
6337122-G-T	6469081-G-T			IR3_Dst				A*
19903651-C-T	17791771-C-T			P5_Prx				A*
20764111-T-C	18602225-T-C			P4_Prx				A*
24277636-T-G	22131489-T-G			P3_b1				A*
24302101-T-G	22155954-T-G			P3_t1				A*
28817495-A-G	26671348-A-G							A*
13814400-GGGAAT-G	11693694-GGGAAT-G						10×GGAAT	+
22486672-C-T	20324786-C-T		BY180219	DYZ19				+
14937823-ATTTTCTTTTC-A	12825888-ATTTTCTTTTCTTTTCTTTTC-A						10×TTTTC	+
13711999-G-C	11556323-G-C		BY192404					+
2793752-C-G	2925711-C-G		BY180235		Y	Y		+
3680823-A-G	3812782-A-G		BY180250					+
6925294-G-A	7057253-G-A		BY180269		Y	Y		+
7376871-TG-T	7508830-TG-T							+
7409797-G-T	7541756-G-T		BY180294		Y	Y		+
7707024-A-G	7838983-A-G				Y	Y		+
7780121-C-A	7912080-C-A		BY180320		Y	Y		+
7864745-C-T	7996704-C-T		BY180325		Y	Y		+
8068202-C-G	8200161-C-G				Y	Y		+
8068960-C-G	8200919-C-G				Y	Y		+
8397827-A-T	8529786-A-T		BY180362		Y	Y		+
8468777-T-C	8600736-T-C		BY180366		Y	Y		+
9133869-A-T	9296260-A-T		BY180409			Y		+
9777194-C-A	9939585-C-A		BY180426		Y			+
13694290-T-C	11538614-T-C		BY211071					+
14149759-T-C	12029053-T-C		BY180456		Y	Y		+
14152880-CTA-C	12032174-CTA-C							+
15033004-A-G	12921092-A-G		BY180505		Y	Y		+
15046844-A-G	12934934-A-G		BY180506		Y	Y		+
15753152-T-A	13641272-T-A		BY180541		Y	Y		+
15949972-A-C	13838092-A-C		BY180552		Y	Y		+
16948686-A-C	14836806-A-C		BY180597		Y	Y		+
17139206-T-C	15027326-T-C		BY180608		Y	Y		+
17565606-G-T	15453726-G-T				Y	Y		+
17806457-C-T	15694577-C-T		BY180656		Y	Y		+
17866531-C-A	15754651-C-A		BY180661		Y	Y		+
17904619-C-A	15792739-C-A		BY180664		Y	Y		+
18426413-G-T	16314533-G-T		BY180693	P6_Gap				+
18717284-T-C	16605404-T-C		BY180702		Y	Y		+
18720402-G-T	16608522-G-T				Y	Y		+
18929665-C-T	16817785-C-T		BY180719		Y	Y		+
19119137-G-A	17007257-G-A		BY180729		Y	Y		+
19193760-C-T	17081880-C-T		BY180737		Y	Y		+
19279146-C-T	17167266-C-T		BY180745		Y	Y		+
21452240-T-A	19290354-T-A		BY180797		Y	Y		+
21881184-C-T	19719298-C-T		BY180822		Y	Y		+
22272470-T-A	20110584-T-A		BY45592	DYZ19				+
22437665-G-C	20275779-G-C		BY218408	DYZ19				+
22638657-T-G	20476771-T-G		BY180848		Y			+
22957842-T-C	20795956-T-C				Y	Y		+
23275781-A-C	21113895-A-C				Y	Y		+
23390582-G-A	21228696-G-A				Y	Y		+
23768433-C-A	21606547-C-A					Y		+
24383252-G-T	22237105-G-T		BY180916			Y		+
28789991-G-A	26643844-G-A							+
17662167-GTAGATAGATAGATAGA-G	15550287-GTAGATAGATAGATAGA-G						16×TAGA	**
18277975-G-T	16166095-G-T			P6_Prx			20×T	*
3719432-G-A	3851391-G-A							*
7459327-G-C	7591286-G-C			IR1_L				*
58972476-C-A	56826329-C-A							**
9351193-T-C	9513584-T-C							**
58978549-A-T	56832402-A-T							**
58972462-G-T	56826315-G-T							**
22463876-G-T	20301990-G-T			DYZ19				**
58972440-CAGAAG-C	56826293-CAGAAG-C							**
58977344-A-ACCATTCCATTCCATT	56831197-A-ACCATTCCATTCCATT						4×CCATT	**
27902194-A-T	25756047-A-T			P1_Y2				**
58974276-T-G	56828129-T-G							**
58974278-T-A	56828131-T-A							**
20213210-CCTT-C	18051324-CCTT-C	FGC5766	FGC5793	P5_Dst			6×CTT	**
27971726-CA-C	25825579-CA-C			P1_Y2			27×A	**
20641604-TGAGA-T	18479718-TGAGA-T			P4_Prx			16×GA	**
13463800-G-A	11308124-G-A							**
7107011-CTATATATA-C	7238970-CTATATATA-C						20×TA	**
13998071-CTT-C	11877365-CTT-C						19×T	**
21435381-GT-G	19273495-GT-G							**
8094509-C-A	8226468-C-A							**
8481034-G-GTA	8612993-G-GTA						12×TA	**
13824758-AGAATG-A	11704052-AGAATG-A						5×GAATG	**
21954550-C-A	19792664-C-A							**
13459340-C-T	11303664-C-T		BY85576					**
20998355-G-A	18836469-G-A			P4_Dst				**
58973000-A-C	56826853-A-C							**
19479688-AGTGT-A	17367808-AGTGT-A						20×GT	**
9559537-G-T	9721928-G-T			IR3_Prx				**
17090839-ATT-A	14978959-ATT-A						29×T	**
6634259-GTT-G	6766218-GTT-G						15×T	**
13488383-A-C	11332707-A-C							**
20025443-CT-C	17913563-CT-C			P5_Prx				**
6699020-ATTT-A	6830979-ATTT-A						24×T	**
13489102-C-T	11333426-C-T							**
19547815-TAAA-T	17435935-TAAA-T						16×A	**
13463785-G-T	11308109-G-T							**
58973012-T-C	56826865-T-C							**
26060220-AT-A	23914073-AT-A			P1_Y1				**
58972012-C-T	56825865-C-T							**
58972993-C-A	56826846-C-A							**
58972954-C-A	56826807-C-A							**
58972958-C-T	56826811-C-T							**
13484106-C-A	11328430-C-A							**
6312785-CTTTT-C	6444744-CTTTT-C			IR3_Dst			11×T	**
	10826580-A-T							**
	10937467-A-G							**
13463729-G-T	11308053-G-T							**
13463737-G-A	11308061-G-A							**
13463745-C-G	11308069-C-G							**
13463754-T-C	11308078-T-C							**
13463773-G-A	11308097-G-A							**
13463776-G-GT	11308100-G-GT							**
13463814-A-C	11308138-A-C							**
13463822-G-T	11308146-G-T							**
	10887974-C-T							**
	10889294-A-G							**
22962187-ATT-A	20800301-ATT-A						14×T	**
	56827687-T-GCATGCCATCCTATTC							**
23512292-A-AT	21350406-A-AT						11×T	**
3651003-G-T	3782962-G-T							**
	56834712-G-T							**
	56834732-T-C							**
4062706-C-A	4194665-C-A							**
	10807242-C-A							**
	10807250-C-A							**
	10807271-T-TA							**
	10807293-T-C							**
	10807305-G-T							**
	10807340-T-G							**
	56828123-C-A							**
17212300-T-TA	15100420-T-TA						12×A	**
22218857-T-A	20056971-T-A			DYZ19				**
17128535-C-A	15016655-C-A						25×T	**
23306630-C-A	21144744-C-A							**
	56826318-C-T							**
	10851125-TGC-T							**
21623836-TTG-T	19461950-TTG-T							**
	10958833-T-C							**
5249006-C-A	5380965-C-A							**
13483301-C-G	11327625-C-G							**
13483312-T-C	11327636-T-C							**
20915172-CCA-C	18753286-CCA-C			P4_Dst				**
	10986875-T-A							**
21082058-C-A	18920172-C-A							**
23425384-C-CA	21263498-C-CA						10×A	**
	10807263-CA-C							**
3032628-CT-C	3164587-CT-C						9×T	**
	10986837-C-T		FT439304					**
	10842513-TC-T							**
	10887984-T-A							**
18825629-C-CAA	16713749-C-CAA						20×A	**
13463705-C-A	11308029-C-A							**
3550574-C-CAA	3682533-C-CAA						24×A	**
	10987833-C-CGG							**
	10987872-TC-T							**
	10987880-A-T							**
	11001393-T-C							**
	21750907-G-T							**
	10878359-C-T							**
17737881-C-CA	15626001-C-CA						9×A	**
10023777-C-A	10186168-C-A							**
	10878346-T-C							**
	10878349-C-G							**
7013599-ATT-A	7145558-ATT-A						13×T	**
22101002-CAAA-C	19939116-CAAA-C						27×A	**
	10842518-T-TC							**
25333890-C-A	23187743-C-A			P2_r1				**
	10656857-C-T							**
	10656892-T-C							**
17056964-A-T	14945084-A-T							**
6295515-T-TA	6427474-T-TA			IR3_Dst				**
13453194-C-A	11297518-C-A							**
13489015-C-A	11333339-C-A							**
3287260-C-A	3419219-C-A							**
	11001356-A-C							**
20998343-G-T	18836457-G-T			P4_Dst				**
	10888019-T-G							**
	10801671-C-G							**
3116397-C-A	3248356-C-A							**
	10937452-C-A							**
24264742-CA-C	22118595-CA-C			P3_b1				**
	10845689-T-G							**
15971225-CTTTT-C	13859345-CTTTT-C						18×T	**
5863942-A-C	5995901-A-C							**
	10767673-C-T							**
16063021-A-C	13951141-A-C							**
	10937392-T-C							**
	10845687-A-T							**
13489092-C-T	11333416-C-T							**
28802784-A-T	26656637-A-T							**
	56828124-C-A							**
	10683240-C-T							**
13483882-C-A	11328206-C-A							**
	10887972-C-G							**
	10887982-C-G							**
	10887996-C-T							**
	10887999-T-A							**
	10888005-C-A							**
19302791-C-T	17190911-C-T							**
19304396-C-A	17192516-C-A							**
17382549-C-A	15270669-C-A							**
	10987790-A-G							**
13249129-C-A	11093453-C-A							**
18793576-C-A	16681696-C-A							**
7166640-ATTT-A	7298599-ATTT-A						12×T	**
	10682522-CA-C							**
	10687985-A-C							**
9799134-CAAAAA-C	9961525-CAAAAA-C						24×A	**
18439257-T-TA	16327377-T-TA			P6_Dst				**
7535887-CA-C	7667846-CA-C							**
	10801718-A-G							**
	11014463-A-T							**
21317019-C-A	19155133-C-A							**
14396417-C-CAA	12275713-C-CAA						13×A	**
3347545-C-A	3479504-C-A							**
4918971-C-A	5050930-C-A							**
4088454-T-G	4220413-T-G							**
	11014452-C-T							**
	10844887-C-A							**
6830538-C-A	6962497-C-A							**
7084408-C-A	7216367-C-A							**
2909248-AAAG-A	3041207-AAAG-A							**
13880721-C-A	11760015-C-A							**
18848614-G-T	16736734-G-T		Y102862					**
	10994144-C-T							**
6664063-G-T	6796022-G-T							**
	56833263-C-A							**
	56833298-C-G							**
	56833315-C-G							**
	56833326-C-A							**
	10682536-C-T							**
5494562-C-A	5626521-C-A							**
6798781-C-A	6930740-C-A							**
23241972-TTTG-T	21080086-TTTG-T							**
14093552-C-A	11972846-C-A							**
6827927-C-A	6959886-C-A							**
17136931-C-CTT	15025051-C-CTT						18×T	**
	10631286-A-T							**
15698462-C-A	13586582-C-A							**
17500761-G-T	15388881-G-T							**
	56826706-C-G							**
17569251-AC-A	15457371-AC-A							**
17569254-G-C	15457374-G-C							**
19588059-T-G	17476179-T-G			P5_Prx				**
24079464-G-T	21933317-G-T			P3_b1				**
28103951-T-TA	25957804-T-TA			P1_Y2				**
13934824-C-A	11814118-C-A							**
13943180-C-A	11822474-C-A							**
9934629-CG-C	10097020-CG-C							**
28484747-C-A	26338600-C-A							**
13489062-G-C	11333386-G-C							**
3267440-C-A	3399399-C-A							**
8692038-C-A	8823997-C-A							**
	56833856-A-C							**
	10971175-C-A							**
3758619-C-A	3890578-C-A							**
	10687987-T-C							**
	10688009-C-T							**
7164564-C-A	7296523-C-A							**
16118305-A-C	14006425-A-C			P8_Prx				**
14422015-A-C	12301290-A-C							**
18047395-C-A	15935515-C-A							**
28808570-C-G	26662423-C-G							**
28808590-A-T	26662443-A-T							**
16277692-T-C	14165812-T-C	FGC73077	FGC73112					**
24205527-T-A	22059380-T-A			P3_b1				**
9963265-C-A	10125656-C-A							**
22263954-C-A	20102068-C-A			DYZ19				**
	10682518-A-G							**
14052936-C-A	11932230-C-A							**
23009927-G-T	20848041-G-T							**
7939520-C-A	8071479-C-A							**
	10987832-T-TTAA							**
28600603-C-A	26454456-C-A							**
14479526-C-A	12358795-C-A							**
6516365-C-A	6648324-C-A							**
17301259-AAAGAAAAG-A	15189379-AAAGAAAAG-A							**
15430321-C-A	13318441-C-A							**
7613865-G-A	7745824-G-A							**
13712347-G-C	11556671-G-C							**
16526510-C-A	14414630-C-A							**
16929898-A-T	14818018-A-T							**
22824913-C-A	20663027-C-A							**
8296873-C-A	8428832-C-A							**
22218859-C-A	20056973-C-A			DYZ19				**
	10683263-C-A							**
	11001354-C-T							**
	11001359-CTTCTT-C							**
14315635-C-A	12194929-C-A							**
13489099-G-A	11333423-G-A							**
18906247-C-A	16794367-C-A							**
	10902368-G-T							**
13226235-C-A	11070559-C-A							**
19597192-ATTATTATTAT-A	17485312-ATTATTATTAT-A			P5_Prx				**
26328684-C-A	24182537-C-A			P1_Y1				**
	10677982-G-T							**
7163110-C-A	7295069-C-A		FT91122					**
20221656-C-A	18059770-C-A			P5_Dst				**
3501218-C-A	3633177-C-A							**
13445537-C-A	11289861-C-A							**
19122266-C-A	17010386-C-A							**
2860244-C-A	2992203-C-A							**
7313073-C-A	7445032-C-A							**
7423844-C-A	7555803-C-A							**
4208945-C-A	4340904-C-A							**
15450054-C-A	13338174-C-A							**
26181093-A-G	24034946-A-G			P1_Y1				**
14716612-C-A	12604680-C-A							**
	10683250-C-A							**
9559580-C-A	9721971-C-A			IR3_Prx			11×T	**
28103972-C-A	25957825-C-A			P1_Y2				**
21136705-C-A	18974819-C-A							**
14234673-C-A	12113967-C-A							**
15386700-TA-T	13274820-TA-T						8×A	**
	11014439-T-G							**
2784446-T-C	2916405-T-C							**
2817177-ATT-A	2949136-ATT-A						10×T	**
3116360-A-C	3248319-A-C							**
3122615-T-A	3254574-T-A							**
3165013-AGT-A	3296972-AGT-A							**
3389476-C-A	3521435-C-A							**
3641316-A-T	3773275-A-T						11×T	**
3641429-G-A	3773388-G-A							**
3663348-C-A	3795307-C-A							**
4016657-A-C	4148616-A-C							**
4016662-T-G	4148621-T-G							**
4261722-C-A	4393681-C-A							**
4384371-G-T	4516330-G-T							**
4460226-A-G	4592185-A-G							**
4473554-G-T	4605513-G-T							**
4604390-C-A	4736349-C-A		FT211453					**
4862526-T-A	4994485-T-A		FT59046					**
4915184-C-A	5047143-C-A							**
4985335-A-G	5117294-A-G							**
5260201-G-T	5392160-G-T							**
5267658-C-T	5399617-C-T							**
6134513-C-A	6266472-C-A							**
6808035-A-C	6939994-A-C							**
6984533-C-T	7116492-C-T							**
6984544-T-C	7116503-T-C							**
6998104-T-C	7130063-T-C							**
7048048-C-A	7180007-C-A		FTB9465					**
7098671-C-T	7230630-C-T							**
7160486-G-A	7292445-G-A							**
7172530-C-A	7304489-C-A							**
7182029-G-T	7313988-G-T							**
7203711-A-G	7335670-A-G							**
7228796-C-A	7360755-C-A							**
7373129-G-T	7505088-G-T							**
7704662-G-A	7836621-G-A							**
7970187-T-C	8102146-T-C							**
7994332-A-G	8126291-A-G		FT251267					**
8051993-A-G	8183952-A-G							**
8075305-G-T	8207264-G-T							**
8713089-A-G	8845048-A-G							**
9211330-T-A	9373721-T-A							**
9476820-C-A	9639211-C-A							**
9935968-C-A	10098359-C-A							**
9946053-C-A	10108444-C-A							**
10031226-C-A	10193617-C-A							**
	10631260-C-A							**
	10631290-C-G							**
	10682521-C-CT							**
	10682530-T-G							**
	10801673-A-AGACGGG							**
	10801675-TC-T							**
	10801730-TC-T							**
	10878296-C-G							**
	10878305-A-C							**
	10878315-A-C							**
	10878319-C-T							**
	10937384-C-A							**
	10958826-C-G							**
	10972318-C-A							**
	10992915-A-G							**
13208069-C-A	11052393-C-A							**
13225898-C-A	11070222-C-A							**
13294309-T-G	11138633-T-G							**
13329319-G-A	11173643-G-A							**
13433682-C-A	11278006-C-A							**
13465098-A-C	11309422-A-C							**
13478069-G-A	11322393-G-A							**
13483706-C-A	11328030-C-A							**
13484097-C-A	11328421-C-A							**
13489031-C-G	11333355-C-G							**
13575741-G-A	11420065-G-A							**
13585373-G-A	11429697-G-A		BY40072					**
13693482-T-A	11537806-T-A							**
13828990-T-C	11708284-T-C							**
13942329-A-G	11821623-A-G							**
14272806-G-T	12152100-G-T							**
14473749-A-G	12353018-A-G							**
14557966-C-A	12446167-C-A							**
14785038-T-G	12673108-T-G							**
15070398-G-C	12958489-G-C							**
15745662-G-T	13633782-G-T							**
15843034-T-C	13731154-T-C							**
16075838-C-A	13963958-C-A							**
16297340-T-TG	14185460-T-TG							**
16568219-A-G	14456339-A-G							**
17052852-C-A	14940972-C-A							**
17053241-T-C	14941361-T-C							**
17056964-A-AAAT	14945084-A-AAAT							**
17217206-A-G	15105326-A-G							**
17346355-C-A	15234475-C-A							**
17440720-A-C	15328840-A-C							**
17926591-A-G	15814711-A-G							**
18143840-G-A	16031960-G-A							**
18202069-C-A	16090189-C-A							**
18253332-C-T	16141452-C-T							**
18951762-A-G	16839882-A-G							**
19047941-C-A	16936061-C-A							**
19127787-A-T	17015907-A-T							**
19476468-C-T	17364588-C-T							**
19586727-T-G	17474847-T-G			P5_Prx				**
19622142-A-G	17510262-A-G			P5_Prx				**
20815588-A-T	18653702-A-T			P4_Gap				**
22426904-AGCT-A	20265018-AGCT-A			DYZ19				**
22426996-G-A	20265110-G-A			DYZ19				**
22658353-T-G	20496467-T-G							**
22734432-G-T	20572546-G-T							**
22810702-C-T	20648816-C-T							**
23019818-C-A	20857932-C-A							**
23184446-G-A	21022560-G-A							**
23274726-T-C	21112840-T-C							**
23393227-T-C	21231341-T-C							**
24267359-G-A	22121212-G-A			P3_b1				**
24416997-A-G	22270850-A-G							**
24614275-G-T	22468128-G-T			P3_t2				**
25096379-C-A	22950232-C-A			g1				**
25914181-T-A	23768034-T-A			P1_Y1				**
27719830-G-T	25573683-G-T			P1_Y2				**
28078772-C-A	25932625-C-A			P1_Y2				**
28544381-C-A	26398234-C-A							**
28772118-C-A	26625971-C-A							**
28800415-G-A	26654268-G-A							**
	56826310-T-G							**
	56826313-A-G							**
	56829763-TTCCTC-T							**
	56833846-A-ATTCCACTCCC							**
	56834698-G-T							**
2822740-A-AAAAT	2954699-A-AAAAT						11×AAAT	***
13448260-TACTCCATTCCACTCC-T	11292584-TACTCCATTCCACTCC-T							***
9700780-C-CA	9863171-C-CA			IR3_Prx			23×A	***
13488423-G-C	11332747-G-C							***
16711090-TTG-T	14599210-TTG-T							***
5785694-T-A	5917653-T-A							***
13459328-T-A	11303652-T-A							***
6434921-T-TA	6566880-T-TA						20×A	***
19529488-G-GA	17417608-G-GA						10×A	***
6120234-C-CATAT	6252193-C-CATAT						14×AT	***
8494536-C-CT	8626495-C-CT						11×T	***
14315408-ATT-A	12194702-ATT-A						16×T	***
6816546-GAA-G	6948505-GAA-G						22×A	***
7163312-CT-C,CTT	7295271-CT-C,CTT						11×T	***
13451897-T-TCATTCCATTC	11296221-T-TCATTCCATTC							***
15750502-CTT-C,CT	13638622-CTT-C,CT						18×T	***
	10987864-C-T							***
13453170-A-G	11297494-A-G							***
	56833737-C-T							***
13453169-C-A	11297493-C-A							***
13453176-T-A	11297500-T-A							***
13453150-A-T	11297474-A-T							***
14320651-CTT-C	12199945-CTT-C						12×T	***
13453190-A-G	11297514-A-G							***
21946945-ATTT-A	19785059-ATTT-A						15×T	***
9771940-CTT-C,CT	9934331-CTT-C,CT						18×T	***
	11014378-A-T							***
13296184-G-GTT	11140508-G-GTT						14×T	***
7418073-CAAAAA-C	7550032-CAAAAA-C						22×A	***
	10987858-C-G							***
15076180-C-CTT	12964270-C-CTT						16×T	***
22429798-T-A	20267912-T-A		FT455977	DYZ19				***
16475266-C-A	14363386-C-A							***
	10987870-A-AT							***
21663262-TAAA-T,TAA	19501376-TAAA-T,TAA						15×A	***
15677505-C-CAA	13565625-C-CAA						16×A	***
16612636-CTT-C,CT	14500756-CTT-C,CT						15×T	***
13458719-T-A	11303043-T-A							***
27618233-C-A	25472086-C-A			P1_Y2				***
6427607-C-A	6559566-C-A							***
	56834459-A-ATTCCATTCCC							***
21705956-G-GA	19544070-G-GA						10×A	***
21033579-AAC-A	18871693-AAC-A							***
6645821-CT-C	6777780-CT-C							***
7242329-C-T	7374288-C-T							***
8843536-ATTTTT-A,ATT	8975495-ATTTTT-A,ATT						23×T	***
10020897-C-CT	10183288-C-CT							***
10031329-C-A	10193720-C-A							***
13228722-A-G	11073046-A-G							***
13228725-A-G	11073049-A-G							***
13253325-G-A	11097649-G-A							***
13456273-C-G	11300597-C-G							***
13464462-C-A	11308786-C-A							***
13488408-A-T	11332732-A-T							***
13819547-C-A	11698841-C-A		FT328496					***
14557872-A-G	12446073-A-G							***
14910798-ATTTTT-A,ATT	12798865-ATTTTT-A,ATT						21×T	***
15288280-T-C	13176379-T-C							***
18693665-TA-T	16581785-TA-T							***
19172799-GT-G,GTTT	17060919-GT-G,GTTT						17×T	***
21373328-C-CT	19211442-C-CT							***
21558737-AA-G	19396851-AA-G							***
24475083-C-T	22328936-C-T							***
25031083-C-A	22884936-C-A			g1				***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Milani

Tree Position

Unique Mutations