Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > Z56 > BY3548 > Z43/S366 > ~19904794-T-C

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B83524
BigY2
B83524
22265260-C-T 20103374-C-T DYZ19 A*A*
3012228-G-T 3144187-G-T A*
13687077-A-G 11531401-A-G DYZ17 A*A*
22234179-A-C 20072293-A-C DYZ19 A*A*
24294371-C-A 22148224-C-A P3_t1 A*A*
26004523-C-A 23858376-C-A P1_Y1 A*A*
26039444-T-C 23893297-T-C P1_Y1 A*A*
26186591-T-C 24040444-T-C P1_Y1 A*A*
28816785-A-G 26670638-A-G A*A*
13451032-A-T 11295356-A-T A*
13451038-T-C 11295362-T-C A*
13451045-C-A 11295369-C-A A*
18374919-C-T 16263039-C-T P6_Prx A*
19650898-A-G 17539018-A-G P5_Prx A*
19790420-A-G 17678540-A-G P5_Prx A*
19865017-T-G 17753137-T-G P5_Prx A*
22468859-G-C 20306973-G-C BY177842 DYZ19 ++
7252645-G-A 7384604-G-A YY++
7634391-A-G 7766350-A-G BY42722 YY++
7654855-G-A 7786814-G-A BY152664 YY++
7776707-G-A 7908666-G-A BY178154 YY**+
8189819-G-A 8321778-G-A BY178246 YY++
8194707-G-C 8326666-G-C BY42751 YY++
8352896-A-C 8484855-A-C BY42761 YY++
8410604-C-T 8542563-C-T BY178284 YY++
8478445-A-G 8610404-A-G BY178310 YY++
9091097-A-T 9253488-A-T BY178437 Y++
9166972-A-G 9329363-A-G BY178465 Y**+
9447180-A-G 9609571-A-G BY178483 YY++
9798235-T-C 9960626-T-C FT370024 YY+**
11037983-C-G +**
13678657-T-A 11522981-T-A BY210882 DYZ17 ++
14702708-T-C 12590774-T-C BY178701 YY++
15441128-A-G 13329248-A-G BY178818 YY++
15578173-A-T 13466293-A-T FT370045 YY+**
15954124-T-G 13842244-T-G BY178904 YY++
16330410-C-T 14218530-C-T YY++
16433669-C-G 14321789-C-G BY178994 YY++
16483249-T-C 14371369-T-C BY179006 YY++
16521131-T-C 14409251-T-C BY179015 YY++
17312171-T-C 15200291-T-C BY179155 YY++
18991583-G-A 16879703-G-A BY179467 YY++
19187071-G-T 17075191-G-T FT370085 Y+**
19214038-C-A 17102158-C-A BY179524 YY++
19461818-A-T 17349938-A-T FT370089 YY+**
21150532-A-C 18988646-A-C Y++
21480632-T-A 19318746-T-A BY43615 YY++
21550951-T-A 19389065-T-A BY179694 YY**+
21620843-G-A 19458957-G-A BY179708 YY++
22294196-G-C 20132310-G-C FT455263 DYZ19 ++
22440701-G-A 20278815-G-A BY177826 DYZ19 **+
22461770-A-G 20299884-A-G BY220742 DYZ19 ++
22462331-C-G 20300445-C-G BY220871 DYZ19 ++
22476600-A-C 20314714-A-C BY223616 DYZ19 **+
22591808-CT-C 20429922-CT-C ++
23164934-A-G 21003048-A-G BY179955 Y++
23349199-T-C 21187313-T-C BY179994 YY++
23729359-T-G 21567473-T-G BY180073 ++
23870715-A-C 21708829-A-C BY180114 Y++
28648919-A-G 26502772-A-G BY180165 Y++
10654-T-A +
4548895-T-A 4680854-T-A 8×A+
5507559-T-C 5639518-T-C FT214957 +
6526936-A-C 6658895-A-C FT370470 +
7240774-C-T 7372733-C-T FT370009 Y+
7379283-G-T 7511242-G-T FT370011 Y+
10986085-G-T FT419550 +
14017047-A-G 11896341-A-G Y+
18187031-C-T 16075151-C-T FT370074 Y+
22037664-C-G 19875778-C-G FT370098 YY+
22283877-G-C 20121991-G-C DYZ19 *
13868384-TGGAAT-T,TGGAAC 11747678-TGGAAT-T,TGGAAC DYZ17 *
18365541-A-G 16253661-A-G BY55072 P6_Prx 20×TG**
13868370-CGAATG-C 11747664-CGAATG-C DYZ17 4×GAATG*
18443542-T-C 16331662-T-C FT96918 P6_Dst *
22236999-C-A 20075113-C-A DYZ19 ***
22253367-A-T 20091481-A-T FT453634 DYZ19 ****
22277053-C-G 20115167-C-G DYZ19 ****
22306948-A-G 20145062-A-G DYZ19 ***
18612803-A-G 16500923-A-G Y22986ZS5100 **
8130510-G-A 8262469-G-A L56Y728 M1075 **
18454801-TTC-T 16342921-TTC-T P6_Dst **
19467008-C-A 17355128-C-A **
18454879-CCCTTTCTT-C 16342999-CCCTTTCTT-C P6_Dst **
58991302-C-T 56845155-C-T **
58989931-A-G 56843784-A-G **
26514931-TCA-T 24368784-TCA-T P1_Y1 9×CA**
28457748-C-CA 26311601-C-CA 21×A**
58990249-T-C 56844102-T-C **
15992284-A-G 13880404-A-G FGC67685 **
13870386-A-G 11749680-A-G **
23807460-G-A 21645574-G-A **
27155028-A-T 25008881-A-T P1_g3 **
15140655-G-GA 13028742-G-GA 9×A**
22166529-C-A 20004643-C-A **
14159713-G-T 12039007-G-T **
10786388-C-A **
22263605-C-A 20101719-C-A DYZ19 **
10790521-C-A **
10629056-C-A **
23807442-A-T 21645556-A-T Y38170 **
23807443-G-A 21645557-G-A **
10989866-C-T **
19079033-C-A 16967153-C-A **
21146274-CCT-C 18984388-CCT-C **
10983969-C-CCGCTT **
10983978-T-G **
10983979-C-G **
10983999-C-T **
10984000-C-CATTTA **
19226544-C-A 17114664-C-A **
11030671-C-T **
11030697-C-T **
10971269-C-A **
9125571-A-T **
18398192-CATATATATATAT-C 16286312-CATATATATATAT-C P6_Gap 15×AT**
5249677-C-A 5381636-C-A **
7340302-C-A 7472261-C-A **
7131403-C-T 7263362-C-T **
22729245-GAAA-G 20567359-GAAA-G 13×A**
22722468-T-C 20560582-T-C **
13705490-G-A 11549814-G-A DYZ17 **
22722485-T-C 20560599-T-C **
11019354-C-A **
10930806-C-A **
17490335-C-A 15378455-C-A **
10803648-C-T **
6944038-C-T 7075997-C-T BY178017 **
13935153-C-A 11814447-C-A **
10804501-T-C **
7381869-A-G 7513828-A-G **
10763012-A-G **
19701525-C-A 17589645-C-A P5_Prx **
56845978-G-T **
4995923-C-A 5127882-C-A **
23807441-G-A 21645555-G-A **
14187372-C-A 12066666-C-A **
56756830-A-C **
56756850-A-C **
6734835-C-A 6866794-C-A **
7381846-T-C 7513805-T-C **
7409696-G-T 7541655-G-T **
14297256-C-T 12176550-C-T **
14297257-A-G 12176551-A-G **
23429905-G-A 21268019-G-A **
4244622-A-ATT 4376581-A-ATT 16×T**
6903160-G-GA 7035119-G-GA 9×A**
10935476-C-A **
10983962-T-TTTCAC **
19091560-C-A 16979680-C-A **
23825669-G-T 21663783-G-T **
9048062-G-T 9210453-G-T **
8428944-CAAAAAAAA-C 8560903-CAAAAAAAA-C 25×A**
10799145-GTCCAT-G **
21262568-C-A 19100682-C-A FT348264 **
10805269-G-T **
10938778-C-A **
20816923-TCA-T 18655037-TCA-T P4_Gap **
6458285-C-A 6590244-C-A **
14819647-G-T 12707714-G-T **
23381918-G-A 21220032-G-A **
23837561-G-T 21675675-G-T FTA13611 **
23807436-C-T 21645550-C-T **
14357806-C-A 12237101-C-A **
23807452-C-T 21645566-C-T **
23807472-C-T 21645586-C-T **
10935449-C-T **
19047938-C-A 16936058-C-A **
15871770-ATTT-A 13759890-ATTT-A 8×T**
10911563-C-A **
13227358-C-A 11071682-C-A **
18973201-C-A 16861321-C-A **
17584287-C-T 15472407-C-T **
5585964-C-A 5717923-C-A **
56844075-A-G **
18443540-CAT-C 16331660-CAT-C P6_Dst *****
10935461-C-G **
56849671-C-A **
15816220-C-A 13704340-C-A **
10666918-C-G **
2850879-G-T 2982838-G-T **
3712297-T-C 3844256-T-C **
14339086-C-A 12218381-C-A **
14969189-G-A 12857264-G-A **
10935469-CTCCAA-C **
23429891-G-C 21268005-G-C **
28755115-C-A 26608968-C-A **
17714992-C-A 15603112-C-A **
6911184-C-A 7043143-C-A **
19303765-C-A 17191885-C-A **
15648784-C-A 13536904-C-A **
14509470-C-A 12397675-C-A **
18278111-C-A 16166231-C-A P6_Prx **
28461102-C-A 26314955-C-A **
11665439-C-A FT450889 DYZ17 **
10855897-G-T **
17394020-G-A 15282140-G-A **
15871764-T-C 13759884-T-C **
7028370-C-A 7160329-C-A **
2783632-C-A 2915591-C-A **
3436288-G-T 3568247-G-T FT91841FT77848 **
10859868-A-C **
14474972-C-A 12354241-C-A **
14981640-A-G 12869716-A-G **
13982893-C-A 11862187-C-A **
14969224-A-G 12857299-A-G **
14061519-C-A 11940813-C-A **
15336890-C-A 13225008-C-A **
14969192-T-C 12857267-T-C **
13202549-C-A 11046873-C-A **
14969188-T-C 12857263-T-C **
16757211-C-T 14645331-C-T BY109862 **
11005543-A-C **
23248375-C-A 21086489-C-A **
21487367-C-A 19325481-C-A **
9048133-G-T 9210524-G-T **
13238358-G-A 11082682-G-A **
21299266-C-A 19137380-C-A **
15536442-C-CA 13424562-C-CA **
2696545-C-T 2828504-C-T **
2708786-G-A 2840745-G-A **
2917919-G-T 3049878-G-T **
2980762-C-A 3112721-C-A **
3347450-C-A 3479409-C-A **
3436514-G-T 3568473-G-T **
3539501-C-A 3671460-C-A **
3681431-T-A 3813390-T-A **
3712299-C-T 3844258-C-T **
4236056-T-C 4368015-T-C **
4353713-A-G 4485672-A-G FT401003 **
4567748-C-A 4699707-C-A **
4616648-T-A 4748607-T-A **
4930689-A-G 5062648-A-G **
6419051-T-TGC 6551010-T-TGC **
6424775-A-C 6556734-A-C **
6877926-A-C 7009885-A-C **
6955253-C-T 7087212-C-T **
6979650-C-A 7111609-C-A **
7221541-C-A 7353500-C-A **
7222957-C-T 7354916-C-T **
7303116-C-A 7435075-C-A **
7359104-ACTTTAT-A 7491063-ACTTTAT-A **
7381847-G-A 7513806-G-A **
7469830-T-C 7601789-T-C IR1_L **
7562259-C-T 7694218-C-T **
7758117-A-C 7890076-A-C **
7758121-T-A 7890080-T-A **
7758125-A-T 7890084-A-T **
7777072-C-A 7909031-C-A **
8171814-C-A 8303773-C-A **
8720092-C-A 8852051-C-A **
8721320-C-A 8853279-C-A **
8721865-C-A 8853824-C-A **
9125559-G-A **
9211352-A-C 9373743-A-C 22×AC**
9454003-C-A 9616394-C-A **
9938343-G-T 10100734-G-T **
10011793-T-G 10174184-T-G **
10629038-A-ACTGCG **
10629053-A-G **
10654103-C-CCCCAGGCCTCTCCTG **
10773056-C-A **
10778800-A-G **
10780013-C-A **
10788695-C-T FT73635 **
10822563-C-A **
10822705-C-A **
10831645-C-G **
10837452-T-G **
10844131-T-C **
10865351-C-A **
10884579-C-A **
10885991-C-A **
10951333-C-T **
10951334-A-G **
10951354-A-C **
10951358-A-C **
10951365-A-T **
10951370-C-T **
10963513-G-A **
10979441-T-A **
10983585-A-T **
10983618-C-CGTTCT **
11000883-C-A **
11005480-TTCCACTCCAC-T **
11005532-C-T **
11005551-C-G **
11005556-C-A **
11006147-C-A **
11025105-C-A **
13238357-T-C 11082681-T-C **
13495811-T-A 11340135-T-A **
13594304-C-A 11438628-C-A **
13720549-G-A 11564873-G-A DYZ17 **
11673572-G-A DYZ17 **
13860702-T-G 11739996-T-G DYZ17 **
13887483-G-A 11766777-G-A **
14003653-C-A 11882947-C-A **
14025719-A-G 11905013-A-G **
14144110-A-T 12023404-A-T **
14230240-A-G 12109534-A-G **
14371276-G-T 12250572-G-T **
14383736-T-C 12263032-T-C FT242708 **
14768594-T-C 12656663-T-C **
14798769-A-G 12686840-A-G **
14798789-A-G 12686860-A-G **
14926192-G-A 12814257-G-A **
14969177-A-G 12857252-A-G **
14969178-G-C 12857253-G-C **
14969207-T-G 12857282-T-G **
14969210-TTAA-T 12857285-TTAA-T **
14969216-GAGAC-G 12857291-GAGAC-G **
14981643-C-T 12869719-C-T **
14981644-A-C 12869720-A-C **
15156839-C-A 13044926-C-A **
15185119-A-C 13073205-A-C **
15209175-C-A 13097261-C-A **
15457970-T-C 13346090-T-C **
15572521-C-A 13460641-C-A **
15745488-C-A 13633608-C-A **
15808971-A-C 13697091-A-C **
15871765-G-A 13759885-G-A **
15905090-A-G 13793210-A-G **
16084138-C-A 13972258-C-A **
16085357-C-A 13973477-C-A **
16302699-C-A 14190819-C-A **
16437967-A-C 14326087-A-C **
16648340-G-A 14536460-G-A **
16704322-G-T 14592442-G-T **
16823821-G-A 14711941-G-A **
16863633-A-G 14751753-A-G **
16922205-T-G 14810325-T-G **
16930580-C-A 14818700-C-A **
17078705-G-T 14966825-G-T **
17101656-TC-T 14989776-TC-T **
17204191-A-G 15092311-A-G **
17222828-C-T 15110948-C-T **
17387463-A-G 15275583-A-G **
17387486-T-G 15275606-T-G **
17557898-C-A 15446018-C-A **
17584274-G-T 15472394-G-T **
17648689-C-A 15536809-C-A **
18223881-A-C 16112001-A-C **
18402420-T-C 16290540-T-C P6_Gap **
18542882-C-A 16431002-C-A **
18554370-C-A 16442490-C-A **
18630910-A-T 16519030-A-T **
18836178-T-G 16724298-T-G **
18839032-C-A 16727152-C-A **
18926922-A-G 16815042-A-G **
20629111-T-G 18467225-T-G P4_Prx **
20674805-T-C 18512919-T-C P4_Prx **
20947767-T-A 18785881-T-A P4_Dst **
21092738-G-C 18930852-G-C **
21167460-C-T 19005574-C-T **
21208910-C-A 19047024-C-A **
21334047-C-A 19172161-C-A **
21563146-A-G 19401260-A-G **
21563151-G-A 19401265-G-A **
21563161-G-A 19401275-G-A **
21617790-A-G 19455904-A-G **
21708294-T-C 19546408-T-C **
21923949-C-G 19762063-C-G **
21923954-T-C 19762068-T-C **
21923955-G-C 19762069-G-C **
21950101-AATT-A 19788215-AATT-A 5×ATT**
22101925-T-C 19940039-T-C **
22173931-C-A 20012045-C-A **
22234795-C-A 20072909-C-A DYZ19 **
22722472-C-T 20560586-C-T FT182480 **
22847881-A-C 20685995-A-C **
23253225-T-G 21091339-T-G **
23253265-G-A 21091379-G-A **
23277638-G-A 21115752-G-A **
23331146-G-A 21169260-G-A **
23425182-A-T 21263296-A-T **
23429919-AAA-T 21268033-AAA-T **
23429926-T-C 21268040-T-C **
23523773-G-A 21361887-G-A **
23523773-G-GA 21361887-G-GA **
24416965-C-G 22270818-C-G **
26154079-C-A 24007932-C-A P1_Y1 **
26154117-G-T 24007970-G-T P1_Y1 **
26229970-C-A 24083823-C-A P1_Y1 **
27398533-A-C 25252386-A-C P1_g3 **
27603584-A-C 25457437-A-C P1_Y2 **
27714419-A-G 25568272-A-G P1_Y2 **
27714431-C-T 25568284-C-T P1_Y2 **
27859537-CATGG-C 25713390-CATGG-C P1_Y2 **
28469214-T-C 26323067-T-C **
28558436-T-C 26412289-T-C **
28719897-T-C 26573750-T-C **
56844078-G-A **
56844092-C-A **
56844111-C-A **
3458362-T-C 3590321-T-C **
4203963-A-G 4335922-A-G **
6008670-C-T 6140629-C-T **
7014553-T-A 7146512-T-A **
7577686-T-C 7709645-T-C **
9410381-G-A 9572772-G-A **
9627137-G-T 9789528-G-T IR3_Prx **
17407635-C-A 15295755-C-A FT419545 **
17779417-A-G 15667537-A-G FT419546 **
18101271-T-G 15989391-T-G FT419547 **
22778421-G-A 20616535-G-A FT419549 **
24267224-C-A 22121077-C-A P3_b1 **
28525908-A-G 26379761-A-G FT218653 **
28543620-G-A 26397473-G-A FT419544 **
13805225-T-G 11684519-T-G DYZ17 ***
22996969-G-GAT 20835083-G-GAT 21×AT***
17004369-T-C 14892489-T-C ***
10676833-C-T ***
10884561-C-A ***
14151642-C-A 12030936-C-A ***
22085440-C-A 19923554-C-A ***
13922430-C-A 11801724-C-A ***
10995850-ACTTCC-A,ACTCCA ***
18253562-C-A 16141682-C-A ***
10937435-AATT-A ***
3790887-TA-T 3922846-TA-T ***
19391119-G-T 17279239-G-T ***
21584463-T-C 19422577-T-C ***
13194312-T-G 11038636-T-G ***
23475536-G-T 21313650-G-T ***
10666935-A-T ***
2955378-CATAT-C 3087337-CATAT-C 9×AT***
14395322-C-A 12274618-C-A ***
10666958-C-CCATTG ***
18235683-CA-C,CAA 16123803-CA-C,CAA 12×A***
10952587-C-A ***
15412771-CTTT-C,CTT 13300891-CTTT-C,CTT 15×T***
23350708-C-A 21188822-C-A ***
16094066-C-A 13982186-C-A ***
15786363-C-A 13674483-C-A ***
28608727-C-A 26462580-C-A ***
2730125-T-C 2862084-T-C ***
6000622-G-T 6132581-G-T BY44845 ***
9426941-A-T 9589332-A-T ***
10746619-A-T ***
10778078-C-A ***
13642476-C-A 11486800-C-A ***
15180536-C-A 13068622-C-A ***
15341884-T-C 13230003-T-C ***
15654814-C-A 13542934-C-A ***
15992169-C-A 13880289-C-A ***
16532848-C-A 14420968-C-A ***
16603134-C-A 14491254-C-A ***
17004372-A-G 14892492-A-G ***
18204150-C-A 16092270-C-A ***
18768717-C-A 16656837-C-A ***
18778757-C-A 16666877-C-A ***
18858358-CT-C 16746478-CT-C ***
18858380-A-G 16746500-A-G ***
19223527-A-G 17111647-A-G ***
21438926-C-A 19277040-C-A ***
21845818-C-A 19683932-C-A ***
21976368-C-A 19814482-C-A ***
22188726-CAC-C,CA 20026840-CAC-C,CA ***
22888392-C-A 20726506-C-A ***
23315864-T-C 21153978-T-C ***
23382008-C-A 21220122-C-A ***
23414017-A-G 21252131-A-G ***
23475969-C-A 21314083-C-A ***
23484452-G-A 21322566-G-A ***
23742149-T-C 21580263-T-C ***
56707213-G-A ***
56835305-CAA-CAG,G ***
2806030-ATTTT-A,ATTTTT 2937989-ATTTT-A,ATTTTT 16×T***
7363157-TA-T,TAA 7495116-TA-T,TAA 18×A***
3603491-ATTT-A,AT 3735450-ATTT-A,AT 24×T***
19720709-ATTT-A,ATT 17608829-ATTT-A,ATT P5_Prx 23×T***
5887228-CAAA-C,CA 6019187-CAAA-C,CA 18×A***
16051046-CTT-C 13939166-CTT-C ***
3146302-G-A 3278261-G-A ***
3411718-AAAG-A 3543677-AAAG-A ***
3854247-C-T 3986206-C-T ***
4102682-C-T 4234641-C-T ***
4978571-C-T 5110530-C-T ***
5816783-T-C 5948742-T-C ***
8055286-A-T 8187245-A-T ***
13409325-G-A 11253649-G-A ***
13977254-G-A 11856548-G-A ***
18762053-A-G 16650173-A-G ***
21270855-G-A 19108969-G-A ***
21443968-T-C 19282082-T-C ***
21633081-T-C 19471195-T-C ***
21653082-T-C 19491196-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.