Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > L165/S68 > FGC29987

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
117033
20443757-C-T 18281871-C-T P5_Dst A+
13723147-G-A 11567471-G-A BY211373 A+
20793477-T-C 18631591-T-C FGC19785 P4_Prx A*
13687311-G-T 11531635-G-T A*
22257102-T-C 20095216-T-C DYZ19 A*
20035116-A-G 17923236-A-G P5_Prx A*
19736017-G-A 17624137-G-A P5_Prx A*
19617458-T-C 17505578-T-C P5_Prx YA*
22252805-C-T 20090919-C-T DYZ19 A*
13451337-C-T 11295661-C-T A*
6324051-C-T 6456010-C-T IR3_Dst A*
8869417-G-A 9001376-G-A BY169627 Y+
7362952-C-T 7494911-C-T BY169256 Y+
21683290-C-T 19521404-C-T BY171170 YY+
21520699-C-T 19358813-C-T BY171135 YY+
2889951-C-T 3021910-C-T BY169046 YY+
5844790-T-TA 5976749-T-TA 9×A+
6826042-T-A 6958001-T-A BY169144 YY+
19311288-T-G 17199408-T-G BY170982 YY+
17233767-G-A 15121887-G-A BY170505 YY+
9090189-A-G 9252580-A-G BY169677 Y+
16697978-A-T 14586098-A-T BY170387 YY+
16223200-C-T 14111320-C-T BY170271 YY+
16133922-A-C 14022042-A-C BY211599 +
21809136-T-C 19647250-T-C BY171208 YY+
15167309-A-G 13055395-A-G BY170062 YY+
15035415-A-T 12923503-A-T BY170040 YY+
13818633-G-T 11697927-G-T BY169796 +
8191664-C-T 8323623-C-T YY+
15256623-C-A 13144707-C-A BY170079 YY+
14925717-A-G 12813782-A-G BY170019 YY+
22072691-CA-C 19910805-CA-C +
8480967-C-T 8612926-C-T A4917 V2088 YY+
23277525-G-A 21115639-G-A BY171472 YY+
22928378-T-C 20766492-T-C BY171402 YY+
22658009-T-C 20496123-T-C BY171345 YY+
24496228-T-C 22350081-T-C BY171655 +
22469930-C-G 20308044-C-G DYZ19 +
14918090-A-T 12806157-A-T M9119 YY+
23865574-T-A 21703688-T-A BY171613 Y+
22467542-C-T 20305656-C-T BY221925 DYZ19 +
22229182-T-C 20067296-T-C BY213339 DYZ19 +
22436385-G-A 20274499-G-A DYZ19 *
13470423-T-A 11314747-T-A *
19003405-A-AT,ATT 16891525-A-AT,ATT 14×T*
7087956-C-A 7219915-C-A **
7664222-A-G 7796181-A-G **
10682640-G-GC **
7063767-G-T 7195726-G-T **
8761498-C-A 8893457-C-A **
7018047-TTTTTAG-T 7150006-TTTTTAG-T **
26148763-C-G 24002616-C-G P1_Y1 **
26148738-C-A 24002591-C-A P1_Y1 **
10659818-C-A **
10682627-G-C **
10772208-T-G **
10682642-GT-G **
10750532-C-T FGC80786 **
10757494-C-A **
10759762-C-T **
6819109-C-A 6951068-C-A **
10819317-A-G **
10819326-C-CATTCT **
10819356-C-T **
10835814-T-A **
10863121-G-T **
10864464-C-T **
10865510-T-A **
10902055-A-T **
10938256-C-A **
10940016-C-A **
26148783-C-A 24002636-C-A P1_Y1 **
26393050-C-A 24246903-C-A P1_Y1 **
6699105-C-A 6831064-C-A **
56771147-T-A **
22361031-G-T 20199145-G-T DYZ19 **
19258993-C-A 17147113-C-A **
19448101-C-A 17336221-C-A **
9977938-G-T 10140329-G-T **
10837731-C-A **
22954616-C-A 20792730-C-A **
10682615-A-G **
22880806-C-A 20718920-C-A **
18263635-C-T 16151755-C-T **
16186490-A-C 14074610-A-C **
11000491-T-C **
7186300-T-G 7318259-T-G **
10755317-C-A **
2688907-A-T 2820866-A-T **
6577111-A-C 6709070-A-C **
28734348-C-A 26588201-C-A **
2977899-G-T 3109858-G-T **
3110642-C-A 3242601-C-A **
3148566-G-A 3280525-G-A **
3329089-AT-A 3461048-AT-A **
3332175-G-A 3464134-G-A BY174882 **
3706843-GTGTGTA-G 3838802-GTGTGTA-G **
4356947-G-A 4488906-G-A **
4580380-A-G 4712339-A-G **
4701335-G-T 4833294-G-T **
4995591-A-T 5127550-A-T **
10954583-GTCCAT-G **
26328629-G-A 24182482-G-A P1_Y1 **
6352727-G-T 6484686-G-T **
10953569-G-A **
11001595-A-G **
10976204-A-G **
18381060-A-T 16269180-A-T P6_Prx **
15823637-A-T 13711757-A-T **
15823645-A-T 13711765-A-T **
16050893-C-A 13939013-C-A **
23514453-C-A 21352567-C-A **
16173181-TGAA-T 14061301-TGAA-T **
16186488-C-A 14074608-C-A **
23381034-A-G 21219148-A-G **
16583279-G-C 14471399-G-C **
16719934-T-C 14608054-T-C **
23358916-G-A 21197030-G-A **
17378096-G-A 15266216-G-A **
17885800-T-C 15773920-T-C **
18381039-A-T 16269159-A-T P6_Prx **
18539200-C-A 16427320-C-A **
15741373-G-T 13629493-G-T **
18688516-A-AC 16576636-A-AC **
18756304-G-T 16644424-G-T **
18858613-A-G 16746733-A-G **
19020237-T-A 16908357-T-A **
19248382-C-A 17136502-C-A **
22650987-T-C 20489101-T-C **
22505706-T-G 20343820-T-G DYZ19 **
20712407-G-T 18550521-G-T P4_Prx **
20757284-CTTTTTTTTTTTTT-C 18595398-CTTTTTTTTTTTTT-C P4_Prx 26×T**
21323461-C-T 19161575-C-T **
21455447-G-A 19293561-G-A **
21672054-A-T 19510168-A-T **
21833929-T-C 19672043-T-C **
15763457-C-A 13651577-C-A **
15595219-T-C 13483339-T-C **
10976958-C-A **
13935727-C-A 11815021-C-A **
10987689-A-C **
10998907-C-A **
11001563-C-CCGACA **
21992287-C-A 19830401-C-A **
11001619-C-T **
11027370-C-A **
13227276-C-A 11071600-C-A **
13297277-C-A 11141601-C-A **
26148723-C-A 24002576-C-A P1_Y1 **
11650627-A-T **
11669555-GA-G **
11672082-A-G **
25963867-C-G 23817720-C-G P1_Y1 34×T**
14086181-G-T 11965475-G-T **
15595199-C-A 13483319-C-A **
14485341-G-T 12364610-G-T **
14505306-C-T 12393511-C-T **
14584664-G-A 12472864-G-A **
14858811-G-A 12746877-G-A **
28791128-C-A 26644981-C-A **
14926423-A-G 12814488-A-G **
23953170-G-T 21807023-G-T **
15218875-C-A 13106961-C-A **
15218992-G-A 13107078-G-A **
15402528-T-A 13290648-T-A **
15402530-T-C 13290650-T-C **
15402537-T-C 13290657-T-C **
15402549-A-G 13290669-A-G **
10953564-T-C **
8669760-C-A 8801719-C-A **
56771150-A-G **
4960588-C-A 5092547-C-A **
11013561-G-A **
23395847-C-A 21233961-C-A **
10941761-T-C **
10691109-C-CTTCAG **
10753937-G-T **
8016933-C-A 8148892-C-A **
19785343-CAAAA-C 17673463-CAAAA-C P5_Prx 26×A**
56771118-G-A **
6709123-A-T 6841082-A-T **
19668782-T-TAA 17556902-T-TAA P5_Prx 33×A**
26991377-G-T 24845230-G-T P1_r4 **
10862787-T-C **
10808708-TTCAAC-T **
10808691-AAATTC-A **
4582399-C-A 4714358-C-A **
10862749-G-T **
56771134-G-A **
11655741-C-A **
19127750-C-A 17015870-C-A **
10953623-A-T **
10953614-TG-T **
17682503-C-A 15570623-C-A **
17238393-C-A 15126513-C-A **
10814117-C-A **
11001596-A-T **
5644688-C-A 5776647-C-A **
7337243-C-A 7469202-C-A **
13927041-C-A 11806335-C-A **
10663078-C-A **
13642736-C-A 11487060-C-A **
10930351-T-C **
10930336-C-G **
10673690-C-A **
10684273-C-G **
10930382-T-C **
18463122-AT-A 16351242-AT-A P6_Dst **
26120289-T-A 23974142-T-A P1_Y1 **
5216386-C-A 5348345-C-A **
16989967-A-G 14878087-A-G **
10746998-C-A **
10746964-A-T **
10655433-T-G **
10691310-C-A **
11004489-G-T **
13461029-T-A 11305353-T-A **
7165303-T-G 7297262-T-G **
11014573-A-C **
22345725-A-G 20183839-A-G DYZ19 **
10989943-T-C **
22715144-TAA-T 20553258-TAA-T 23×A**
22300707-A-G 20138821-A-G Z4981 DYZ19 **
5924694-CCA-C 6056653-CCA-C 9×CA**
5426407-TGA-T 5558366-TGA-T **
19271400-A-G 17159520-A-G CTS10118 **
28797898-A-G 26651751-A-G **
20850691-A-ATG 18688805-A-ATG P4_Dst **
10929472-C-A **
10888077-T-C **
10812412-TATTCC-T **
11001563-C-G **
13854905-C-A 11734199-C-A **
9141868-C-A 9304259-C-A **
11029758-C-A **
10953604-A-T **
10762982-A-T **
15683796-C-A 13571916-C-A **
11000720-C-A **
21919385-G-T 19757499-G-T **
20579322-C-T 18417436-C-T P5_Dst **
11018255-C-T **
22798051-G-T 20636165-G-T **
10682677-G-A **
10763048-C-A **
3285062-G-T 3417021-G-T **
9962155-C-A 10124546-C-A **
6856743-CA-C 6988702-CA-C 8×A**
10997134-C-G **
10684289-C-T **
14933507-C-A 12821572-C-A **
10997142-T-C **
22489564-C-A 20327678-C-A DYZ19 **
8288619-C-A 8420578-C-A **
10997162-T-A **
14160395-G-T 12039689-G-T **
11001579-C-CAATCCACTCA **
11001559-C-T **
19678800-T-G 17566920-T-G P5_Prx **
10902912-G-T **
28597317-C-A 26451170-C-A **
22857823-C-A 20695937-C-A **
10682631-T-A **
13217871-C-A 11062195-C-A **
28791117-C-G 26644970-C-G **
18263832-G-A 16151952-G-A **
10862735-T-C **
14485990-C-A 12365259-C-A **
10682623-C-A **
6293421-G-T 6425380-G-T IR3_Dst **
22360985-C-G 20199099-C-G DYZ19 **
13896375-C-A 11775669-C-A **
16559991-C-A 14448111-C-A **
21556940-TTTG-T 19395054-TTTG-T **
10956693-C-A **
23061273-C-A 20899387-C-A **
8075752-C-A 8207711-C-A **
10684262-T-A **
5874217-C-A 6006176-C-A **
5817709-T-C 5949668-T-C FT2659 **
27906727-G-T 25760580-G-T P1_Y2 **
3943419-CT-C 4075378-CT-C 10×T**
10684194-C-A **
19537919-G-T 17426039-G-T **
4114708-A-G 4246667-A-G **
28081883-AACAC-A 25935736-AACAC-A P1_Y2 8×AC**
16583280-G-A 14471400-G-A **
27647791-C-A 25501644-C-A P1_Y2 **
22252461-T-C 20090575-T-C DYZ19 **
21323516-C-A 19161630-C-A **
6491291-C-A 6623250-C-A **
13598806-G-A 11443130-G-A **
10994199-C-T **
10684226-T-C **
10684229-CACTCT-C **
10684238-C-A **
10819163-C-A **
15452363-C-A 13340483-C-A **
28797893-C-G 26651746-C-G **
27908263-T-TC 25762116-T-TC P1_Y2 **
20685087-G-A 18523201-G-A P4_Prx **
9973549-C-A 10135940-C-A **
6264483-T-TC 6396442-T-TC IR3_Dst **
7774156-C-A 7906115-C-A **
28791137-G-T 26644990-G-T **
28633782-C-A 26487635-C-A **
10686943-C-A **
7223302-G-GT 7355261-G-GT 9×T**
4908274-C-A 5040233-C-A **
7470700-CAAAAA-C 7602659-CAAAAA-C IR1_L 25×A***
7990751-G-A 8122710-G-A ***
10929701-C-A ***
13811138-G-T 11690432-G-T ***
10883674-C-A ***
13478138-C-A 11322462-C-A ***
7152637-AGAATG-A 7284596-AGAATG-A ***
9859192-C-CAA 10021583-C-CAA 17×A***
6090595-C-A 6222554-C-A ***
13726001-C-T 11570325-C-T ***
13860664-C-A 11739958-C-A ***
13474080-G-A 11318404-G-A ***
15969956-TA-T,TAA 13858076-TA-T,TAA 20×A***
13474067-G-GC 11318391-G-GC ***
14324923-G-A 12204217-G-A ***
15380311-T-C 13268431-T-C ***
10995840-A-C,T ***
10969245-C-G ***
10969237-A-T ***
10764546-TTTTC-T,TTT ***
21623841-G-T 19461955-G-T ***
10691990-G-A ***
15276882-G-GAA 13164971-G-GAA 18×A***
8562865-CAAA-C,CAA 8694824-CAAA-C,CAA 17×A***
10678602-CCACC-C,CCATT ***
10666936-C-A,T ***
9117145-T-C 9279536-T-C ***
14593447-CT-C,CTT 12481647-CT-C,CTT 15×T***
18235683-C-CA,CAA 16123803-C-CA,CAA 12×A***
18271091-A-G 16159211-A-G ***
10969260-C-T ***
18923342-GT-G,GTT 16811462-GT-G,GTT 18×T***
6647090-T-C 6779049-T-C ***
7177111-C-CA,CAA 7309070-C-CA,CAA 13×A***
10922399-C-A ***
10763010-C-A ***
21409423-A-G 19247537-A-G ***
2688789-A-AT 2820748-A-AT 8×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 117033975493979413467827665
Used in age calculations975493979413467827665
Counts of SNPs2122
Variant counts last updated 2019-08-26 23:03:55.



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