Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > FGC23342

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N2640
18392814-G-A 16280934-G-A Z7578 P6_Gap 8×TCTAA*
22276112-T-A 20114226-T-A DYZ19 A*
13451281-C-T 11295605-C-T A*
25849701-T-TA 23703554-T-TA P1_Y1 9×AA*
13836602-G-A 11715896-G-A +
10031722-C-A 10194113-C-A Y+
18575645-T-C 16463765-T-C BY170781 YY+
8664691-T-C 8796650-T-C BY169586 YY+
21993564-G-A 19831678-G-A BY171253 YY+
15791631-T-C 13679751-T-C BY170207 YY+
21721191-T-A 19559305-T-A BY171181 YY+
21370245-C-A 19208359-C-A BY171102 YY+
21221438-T-C 19059552-T-C BY171057 YY+
7809573-C-G 7941532-C-G BY169350 YY+
10802375-T-TCATTC +
13899888-T-C 11779182-T-C BY169836 YY+
19142228-C-G 17030348-C-G BY170934 YY+
17957470-T-C 15845590-T-C BY170679 YY+
17920713-C-T 15808833-C-T BY170669 YY+
14005208-G-A 11884502-G-A F18325 YY+
13826215-C-T 11705509-C-T BY169806 +
16556961-A-G 14445081-A-G BY170352 YY+
16858602-A-G 14746722-A-G BY170429 YY+
16984839-C-A 14872959-C-A BY170454 YY+
19690154-CTTAAA-C 17578274-CTTAAA-C P5_Prx +
17461205-T-C 15349325-T-C BY170547 YY+
24205509-T-C 22059362-T-C BY225987 P3_b1 *
22315701-A-G 20153815-A-G DYZ19 *
13838913-G-GTGGAA 11718207-G-GTGGAA *
7123447-G-T 7255406-G-T **
6039709-CCAGTT-C 6171668-CCAGTT-C **
6621508-A-C 6753467-A-C **
6634160-C-A 6766119-C-A **
5888383-C-A 6020342-C-A **
5796901-G-T 5928860-G-T **
7042270-C-A 7174229-C-A **
7159221-CC-G 7291180-CC-G **
24971082-C-CT 22824935-C-CT g1 14×T**
7159224-T-C 7291183-T-C **
10758213-C-A **
10810871-C-A **
10782658-C-A **
10781404-C-A **
10778411-C-A **
10776111-ATT-A **
10761117-C-A **
10757460-C-T **
7310556-C-A 7442515-C-A **
10664546-G-A **
10651803-T-C **
10081113-C-A 10243504-C-A **
9935360-C-A 10097751-C-A **
9639125-T-C 9801516-T-C IR3_Prx **
8078643-G-T 8210602-G-T **
7867968-C-A 7999927-C-A **
5602589-G-T 5734548-G-T **
4510038-C-A 4641997-C-A **
5345152-G-T 5477111-G-T **
14089849-C-A 11969143-C-A **
21462514-T-A 19300628-T-A **
23368801-C-A 21206915-C-A **
7159205-C-A 7291164-C-A **
7159213-T-A 7291172-T-A **
4416773-C-A 4548732-C-A **
14376547-C-A 12255843-C-A **
10763078-TTCCAC-T **
15045712-C-A 12933802-C-A **
10927633-CTGCTG-C **
7310051-C-A 7442010-C-A **
10776185-TACTCC-T **
10752998-T-C **
10776105-C-T **
10993497-C-T **
6368695-G-T 6500654-G-T **
18022242-C-A 15910362-C-A **
5242745-T-G 5374704-T-G **
4366246-C-A 4498205-C-A **
5212674-C-A 5344633-C-A **
4731777-T-C 4863736-T-C **
4666024-C-A 4797983-C-A **
4532114-G-T 4664073-G-T **
10840855-T-C **
4504778-G-A 4636737-G-A **
4129637-G-A 4261596-G-A **
11033079-G-T **
3967638-T-C 4099597-T-C **
3631237-G-T 3763196-G-T **
3538040-G-T 3669999-G-T **
3156692-C-A 3288651-C-A **
2950448-A-T 3082407-A-T **
2844022-G-T 2975981-G-T **
10813880-C-A **
11026556-C-A **
10849086-C-A **
22810915-C-A 20649029-C-A **
17218300-C-A 15106420-C-A 16×T**
17703285-A-C 15591405-A-C **
18189633-C-A 16077753-C-A **
18688260-T-C 16576380-T-C **
18930005-C-T 16818125-C-T **
19300409-A-G 17188529-A-G **
19563212-C-A 17451332-C-A **
19892870-T-TC 17780990-T-TC P5_Prx **
20348154-A-T 18186268-A-T P5_Dst **
21583757-A-G 19421871-A-G **
21721194-T-TC 19559308-T-TC **
21991449-C-T 19829563-C-T **
22059927-A-T 19898041-A-T **
23137100-ATTATTAAAAAGTCAGG-A 20975214-ATTATTAAAAAGTCAGG-A **
16541128-A-G 14429248-A-G **
23186110-T-G 21024224-T-G **
23381062-G-A 21219176-G-A **
23625438-T-C 21463552-T-C **
23655447-C-A 21493561-C-A **
24052423-T-C 21906276-T-C P3_b1 **
24582374-C-A 22436227-C-A P3_t2 **
24583339-T-G 22437192-T-G P3_t2 **
24881050-A-AG 22734903-A-AG g1 **
25592925-A-AAT 23446778-A-AAT P1_gr1 **
25983813-C-CAAA 23837666-C-CAAA P1_Y1 14×A**
25987993-G-T 23841846-G-T P1_Y1 **
27785824-A-G 25639677-A-G P1_Y2 **
28567458-C-A 26421311-C-A **
56843300-G-T **
17217046-G-T 15105166-G-T **
16245449-T-C 14133569-T-C **
10856203-C-A **
13507033-ACT-A 11351357-ACT-A **
10879898-C-T **
10923734-C-G **
10927624-C-G **
10938248-G-T **
10938269-G-T **
10953769-C-A **
10983630-T-C **
10993495-T-A **
10993541-C-A **
11017397-T-A **
11018353-G-T **
19296922-C-A 17185042-C-A **
13225796-C-A 11070120-C-A **
13506999-T-C 11351323-T-C **
11652180-G-A **
16028265-G-A 13916385-G-A BY203398 **
11671571-G-T **
13855275-C-T 11734569-C-T **
13990124-C-A 11869418-C-A **
14385245-C-A 12264541-C-A **
14473692-C-A 12352961-C-A **
14582268-C-T 12470468-C-T **
15060779-C-A 12948871-C-A **
15128038-T-A 13016125-T-A **
15342459-A-G 13230578-A-G **
15432712-C-T 13320832-C-T **
15682873-G-A 13570993-G-A **
15685232-C-A 13573352-C-A **
15774863-G-T 13662983-G-T **
15971462-T-TCA 13859582-T-TCA **
17693667-A-C 15581787-A-C **
18212499-C-A 16100619-C-A **
8753761-C-A 8885720-C-A **
10770366-C-A **
5851429-C-A 5983388-C-A **
23825753-C-CA 21663867-C-CA 21×A**
20888639-C-A 18726753-C-A P4_Dst **
10796109-T-A **
10796121-C-A **
10796122-C-A **
13611988-G-GTTTTTTTTT 11456312-G-GTTTTTTTTT 19×T**
4138432-A-G 4270391-A-G **
10756338-A-T **
25096518-A-G 22950371-A-G BY16497 g1 **
58843060-G-A 56747811-C-T **
28659610-C-A 26513463-C-A **
16783412-TAA-T 14671532-TAA-T 13×A**
9531231-GGT-G 9693622-GGT-G IR3_Prx 10×GT**
24264741-AC-A 22118594-AC-A P3_b1 **
10927596-C-T **
5188685-C-A 5320644-C-A **
18746982-CTTT-C 16635102-CTTT-C 13×T**
10759962-C-A **
10759953-T-G **
26099037-A-AC 23952890-A-AC P1_Y1 **
7107626-C-A 7239585-C-A **
13507032-T-C 11351356-T-C **
5864697-A-G 5996656-A-G **
9557063-TTG-T 9719454-TTG-T IR3_Prx **
13460851-T-G 11305175-T-G **
59001559-G-A 56855412-G-A **
17313248-C-T 15201368-C-T **
10923738-T-C **
17056680-CA-C 14944800-CA-C **
13223579-G-A 11067903-G-A **
13507006-G-A 11351330-G-A **
22965169-G-T 20803283-G-T **
10815293-A-C **
7180087-C-CT 7312046-C-CT 11×T**
10951066-C-A **
10951063-T-C **
10684602-G-T **
10935237-G-T **
10660935-G-T **
10927613-G-C **
3550576-A-C 3682535-A-C **
14097945-ATTT-A 11977239-ATTT-A 23×T**
10993554-T-C **
28567456-C-A 26421309-C-A **
13705500-G-A 11549824-G-A **
13718530-G-T 11562854-G-T **
10788261-C-A **
21617602-C-A 19455716-C-A **
10849741-C-A **
10849784-C-G **
10849819-T-C BY83909 **
21009203-TTC-T 18847317-TTC-T P4_Dst **
10759944-G-C **
18196490-CAAAA-C 16084610-CAAAA-C 26×A**
13460837-A-G 11305161-A-G **
10867969-T-C **
13460833-G-A 11305157-G-A **
10761133-C-A **
13859387-GTGGAATGGAA-G 11738681-GTGGAATGGAA-G 11×TGGAA**
17165447-C-A 15053567-C-A **
10797755-A-C **
10663265-C-A **
25592925-A-T 23446778-A-T P1_gr1 **
20384619-GTT-G 18222733-GTT-G P5_Dst 16×T**
10757337-A-T **
10867947-A-C **
10987093-A-C **
25592951-G-T 23446804-G-T P1_gr1 **
25592940-C-A 23446793-C-A P1_gr1 **
2803577-C-A 2935536-C-A **
19479869-A-T 17367989-A-T **
22366301-G-A 20204415-G-A DYZ19 **
27535082-C-A 25388935-C-A P1_Y2 **
13507027-T-C 11351351-T-C **
13507023-A-C 11351347-A-C **
10767087-C-A **
13460847-C-A 11305171-C-A **
25988035-A-AT 23841888-A-AT P1_Y1 **
13460853-C-T 11305177-C-T **
13460854-C-A 11305178-C-A **
13460864-G-C 11305188-G-C **
21268878-C-A 19106992-C-A **
3649102-C-A 3781061-C-A **
28567443-C-A 26421296-C-A **
16673073-C-A 14561193-C-A **
11034909-G-T **
14180729-C-A 12060023-C-A **
10993534-C-T **
10993537-T-C **
15742945-C-A 13631065-C-A **
23225600-C-A 21063714-C-A **
10849807-T-A **
20998385-C-A 18836499-C-A P4_Dst **
19407622-TTC-T 17295742-TTC-T **
10998600-GCCATT-G **
10849837-T-C **
17737463-C-A 15625583-C-A **
6434574-C-A 6566533-C-A **
5563038-G-A 5694997-G-A Y1927 FGC2480 **
11669874-C-A **
10760060-C-A **
5458125-C-CA 5590084-C-CA 16×A**
15403612-C-A 13291732-C-A **
11003910-C-A **
19609467-G-T 17497587-G-T P5_Prx **
10849822-T-A **
10849835-C-G **
5215804-C-A 5347763-C-A **
3606356-C-A 3738315-C-A **
10934277-A-C **
18329505-T-TA 16217625-T-TA P6_Prx **
28715847-C-A 26569700-C-A **
10867942-A-C **
10753429-G-T **
11006813-C-T **
11033502-G-A **
27808682-C-T 25662535-C-T P1_Y2 **
19330328-G-T 17218448-G-T **
20570253-C-A 18408367-C-A P5_Dst **
8734237-C-A 8866196-C-A FGC25794 **
10796585-T-A ***
17178-T-A ***
10809558-C-A ***
28529840-GA-G 26383693-GA-G 10×A***
28782836-G-T 26636689-G-T ***
17175-T-A ***
17169-G-C ***
17168-G-A ***
17171-C-G ***
10860875-C-A ***
10796558-T-G ***
10660718-G-A ***
23391496-AT-A,ATT 21229610-AT-A,ATT 20×T***
10939829-G-A ***
10686658-CTCCTT-C,CTCCAA ***
10796683-A-ATTTCT ***
10792768-C-CCTTAT ***
7717635-C-CTTTCCT 7849594-C-CTTTCCT ***
10653548-C-T ***
13466470-C-T 11310794-C-T ***
14884698-GAA-G 12772764-GAA-G 26×A***
6647070-C-A 6779029-C-A ***
10973609-T-C ***
14032642-CA-C,CAA 11911936-CA-C,CAA 14×A***
17215077-G-T 15103197-G-T ***
13463659-A-G 11307983-A-G ***
13859360-G-A 11738654-G-A ***
13573097-C-T 11417421-C-T ***
10796559-C-T ***
10796601-C-A ***
10796571-A-C ***
10796578-C-A ***
10796582-A-C ***
10796588-A-G ***
10796589-A-G ***
10796596-T-G ***
10796605-C-A ***
14008778-GAA-G,GAAA 11888072-GAA-G,GAAA 25×A***
10796607-G-T ***
10796625-C-CA ***
17576262-C-A 15464382-C-A ***
10825218-T-A ***
15074729-A-G 12962819-A-G ***
4928964-C-A 5060923-C-A ***
10825274-G-A ***
17183-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N2640973935579018917781172
Used in age calculations973935579018917781172
Counts of SNPs1817
Variant counts last updated 2019-09-10 00:14:35.



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