Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > Z29719 > FGC65779

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
E34785
28816657-T-C 26670510-T-C A*
13688238-A-AATGGT 11532562-A-AATGGT A*
8611736-C-A 8743695-C-A BY166480 YY+
8652342-A-G 8784301-A-G FGC28423 YY+
17368503-T-A 15256623-T-A BY167554 YY+
13478559-G-A 11322883-G-A BY210358 +
8611736-CT-C 8743695-CT-C +
16742565-T-C 14630685-T-C BY167371 YY+
15933899-G-A 13822019-G-A BY104980 YY+
8388310-A-G 8520269-A-G BY166375 YY+
7240124-C-T 7372083-C-T BY166079 Y+
13452267-C-G 11296591-C-G *
13467876-C-A 11312200-C-A *
23981833-ATGTGTGTG-A,ATG 21835686-ATGTGTGTG-A,ATG 17×TG*
22275695-G-T 20113809-G-T DYZ19 *
22320146-T-A 20158260-T-A ZP158BY217463 DYZ19 *
14423963-A-G 12303238-A-G **
10028542-C-A 10190933-C-A **
9871106-C-A 10033497-C-A **
9839573-C-A 10001964-C-A **
9830325-C-A 9992716-C-A **
9361060-A-T 9523451-A-T **
9012972-T-G 9175363-T-G **
9093475-G-T 9255866-G-T **
10750548-C-A **
8973593-G-T 9135984-G-T **
8852208-AG-A 8984167-AG-A **
8748423-A-C 8880382-A-C **
8737775-A-G 8869734-A-G **
8706838-T-G 8838797-T-G **
14580981-G-T 12469181-G-T **
8648172-G-T 8780131-G-T 14×AT**
14712015-G-A 12600082-G-A **
10652597-C-A **
14484449-G-T 12363718-G-T **
10811635-G-A **
13840622-A-G 11719916-A-G **
14431669-C-G 12310942-C-G **
14274885-A-AG 12154179-A-AG **
14274877-A-G 12154171-A-G **
14274862-A-C 12154156-A-C **
14215687-C-A 12094981-C-A **
14102079-C-A 11981373-C-A FGC17475 **
11676369-A-G **
10868313-C-A **
14484427-C-T 12363696-C-T **
11670699-A-G **
14484431-G-C 12363700-G-C **
14484436-T-C 12363705-T-C **
10941532-C-A **
10938385-T-TTGAGC **
10938367-C-T **
13550947-C-A 11395271-C-A **
14484432-T-A 12363701-T-A PR1437 **
8570963-A-G 8702922-A-G **
7313684-C-A 7445643-C-A **
8742665-C-A 8874624-C-A **
11021172-C-A **
20816924-C-A 18655038-C-A P4_Gap 22×A**
21816441-C-A 19654555-C-A **
17303160-C-A 15191280-C-A **
19074945-G-A 16963065-G-A **
24264479-G-T 22118332-G-T P3_b1 **
7299077-C-A 7431036-C-A **
22540627-C-A 20378741-C-A **
28424353-CA-C 26278206-CA-C P1_gr2 **
15801695-A-T 13689815-A-T **
23352412-C-A 21190526-C-A **
14500309-C-A 12388514-C-A **
58981558-C-T 56835411-C-T **
6653020-C-A 6784979-C-A **
15801706-A-G 13689826-A-G **
10760242-C-A **
10760235-C-A **
10890119-T-C **
2724346-A-AT 2856305-A-AT **
14855311-C-A 12743377-C-A **
7131774-C-A 7263733-C-A **
8374961-C-A 8506920-C-A **
8266822-A-G 8398781-A-G **
8169345-G-A 8301304-G-A **
8140734-C-A 8272693-C-A **
7975613-C-A 8107572-C-A **
7650178-C-A 7782137-C-A **
7468078-C-A 7600037-C-A IR1_L **
7146265-G-A 7278224-G-A **
7092513-T-G 7224472-T-G **
2915222-G-A 3047181-G-A **
7016431-A-G 7148390-A-G **
6900941-C-A 7032900-C-A **
6621362-C-A 6753321-C-A **
6400943-C-A 6532902-C-A **
6180440-G-C 6312399-G-C IR3_Dst **
4364316-G-T 4496275-G-T **
4069941-C-A 4201900-C-A **
4034573-G-T 4166532-G-T **
3967015-C-A 4098974-C-A **
14844908-C-A 12732974-C-A **
15477755-T-A 13365875-T-A **
14957648-C-A 12845723-C-A **
21148434-C-T 18986548-C-T **
22472338-T-C 20310452-T-C DYZ19 **
22066959-AT-A 19905073-AT-A **
22037690-G-A 19875804-G-A **
21876145-C-A 19714259-C-A **
21419171-G-T 19257285-G-T **
21163501-C-A 19001615-C-A **
21152875-C-A 18990989-C-A **
21148441-G-A 18986555-G-A FT14086 **
21148428-G-T 18986542-G-T **
22625082-A-G 20463196-A-G **
21135034-T-A 18973148-T-A **
21135033-C-A 18973147-C-A **
21135031-A-G 18973145-A-G **
21135030-C-A 18973144-C-A **
21135018-G-T 18973132-G-T **
21135011-G-C 18973125-G-C **
21134999-T-A 18973113-T-A **
20969226-T-G 18807340-T-G P4_Dst **
22579522-C-A 20417636-C-A **
22890256-T-G 20728370-T-G **
20822776-C-A 18660890-C-A P4_Gap **
24324206-A-T 22178059-A-T P3_t1 **
56827548-TTTCCA-T **
28560352-T-A 26414205-T-A **
28465730-C-A 26319583-C-A **
24445395-A-C 22299248-A-C **
24445394-C-T 22299247-C-T **
24382077-G-C 22235930-G-C **
24382044-A-T 22235897-A-T **
24353157-T-TA 22207010-T-TA P3_t1 **
23745266-T-C 21583380-T-C **
23272410-G-T 21110524-G-T **
23633428-G-C 21471542-G-C **
23633415-C-A 21471529-C-A **
23590971-C-A 21429085-C-A **
23515109-C-A 21353223-C-A **
23412002-C-A 21250116-C-A **
23327184-T-C 21165298-T-C **
23312491-C-A 21150605-C-A **
23311014-C-A 21149128-C-A **
23298681-A-G 21136795-A-G **
20969224-T-G 18807338-T-G P4_Dst **
20470194-T-C 18308308-T-C P5_Dst **
15157837-G-A 13045924-G-A **
15963878-G-C 13851998-G-C **
16896495-G-T 14784615-G-T **
16842193-C-A 14730313-C-A **
16770527-C-A 14658647-C-A **
16514027-T-C 14402147-T-C **
16426437-T-C 14314557-T-C **
16364125-C-A 14252245-C-A **
16006242-A-G 13894362-A-G **
15974923-T-C 13863043-T-C **
15963865-T-A 13851985-T-A **
17285096-T-G 15173216-T-G **
15801691-T-A 13689811-T-A **
15801686-A-T 13689806-A-T **
15747496-C-A 13635616-C-A **
15742903-T-C 13631023-T-C **
15616201-C-A 13504321-C-A **
16243182-C-A 14131302-C-A **
15269678-C-A 13157767-C-A **
15264858-T-C 13152947-T-C **
15193370-G-T 13081456-G-T **
16968445-G-T 14856565-G-T **
17484594-G-T 15372714-G-T **
20420750-G-T 18258864-G-T P5_Dst **
19062046-C-A 16950166-C-A **
20337720-A-AT 18175834-A-AT P5_Dst 9×T**
19557069-G-T 17445189-G-T **
19511767-C-A 17399887-C-A **
19509161-C-A 17397281-C-A BY129691 **
19477745-A-G 17365865-A-G **
19472512-T-C 17360632-T-C **
19466914-C-A 17355034-C-A **
19209716-C-A 17097836-C-A **
18937211-C-A 16825331-C-A **
17548774-C-A 15436894-C-A **
18708092-A-G 16596212-A-G **
18636576-T-G 16524696-T-G **
18596244-G-A 16484364-G-A **
18421617-CAA-C 16309737-CAA-C P6_Gap **
18185559-C-A 16073679-C-A **
18019249-TCAAA-T 15907369-TCAAA-T 4×CAAA**
17890703-C-A 15778823-C-A **
17886342-C-A 15774462-C-A **
17687897-C-T 15576017-C-T **
10760220-C-G **
14101297-C-A 11980591-C-A **
16620499-C-A 14508619-C-A **
25990662-G-T 23844515-G-T P1_Y1 **
56834986-C-T **
7199216-C-A 7331175-C-A **
10756683-C-G **
10851031-A-G **
11022984-C-T **
11022966-C-G **
10760239-T-G **
7242119-C-A 7374078-C-A **
11015766-C-A **
15445631-C-A 13333751-C-A **
10945723-T-C **
10945710-C-T **
10945707-G-A **
10945698-G-A **
10829384-A-T **
10829350-T-A **
10829347-T-C **
22564456-C-A 20402570-C-A **
10845686-C-CATTCTGTTCAGGTTA **
10829343-T-A **
56834978-G-GTTCA **
15710379-C-A 13598499-C-A **
18712811-CA-C 16600931-CA-C **
10759809-C-A **
15051377-G-A 12939468-G-A **
15051376-T-C 12939467-T-C **
13461091-A-G 11305415-A-G **
18712827-C-T 16600947-C-T **
18412877-GA-G 16300997-GA-G P6_Gap 9×A**
18811033-C-A 16699153-C-A **
14356292-C-A 12235587-C-A **
17167847-T-C 15055967-T-C **
13478290-C-A 11322614-C-A **
28624385-C-A 26478238-C-A **
10989478-T-C **
13809802-C-A 11689096-C-A **
6346173-C-A 6478132-C-A **
4138576-G-T 4270535-G-T **
11030074-C-T **
10829344-T-C **
10829319-T-C **
14143320-C-A 12022614-C-A **
58969954-A-G 56823807-A-G **
21438773-C-A 19276887-C-A **
5785654-TAAAA-T 5917613-TAAAA-T 24×A**
11655364-A-G **
13472223-C-T 11316547-C-T **
17307354-C-A 15195474-C-A **
58981116-T-TTCCATTC 56834969-T-TTCCATTC **
13466099-G-T 11310423-G-T **
58981121-C-T 56834974-C-T **
21135017-T-C 18973131-T-C Y10036 Z9569 **
14549309-CAAA-C 12437510-CAAA-C 16×A**
21438785-TAAAA-T 19276899-TAAAA-T 31×A**
21138761-A-AG 18976875-A-AG 8×G**
17372164-G-C 15260284-G-C CTS7241 **
20881862-CA-C 18719976-CA-C P4_Dst 16×A**
13468992-C-G 11313316-C-G **
13468991-C-T 11313315-C-T **
23593388-G-GA 21431502-G-GA 10×A**
13472212-C-A 11316536-C-A **
10945705-T-C **
18411143-G-T 16299263-G-T P6_Gap **
10982240-A-T **
11022995-T-A **
19263496-G-GAA 17151616-G-GAA 14×A**
10851049-T-G **
15428337-C-CT 13316457-C-CT 10×T**
20833639-TA-T 18671753-TA-T P4_Gap 10×A**
24382046-A-G 22235899-A-G **
7470700-CAAA-C 7602659-CAAA-C IR1_L 25×A**
10759825-C-A **
10654228-C-G **
11022954-C-T **
10756689-T-C **
10995809-C-T **
8281580-C-A 8413539-C-A **
10995846-C-T **
13466049-T-C 11310373-T-C **
10678672-C-G **
10678667-C-G **
10678664-T-A FGC81859 **
10678631-T-TCTCGTTGATA **
10982280-C-A **
56837773-A-G **
6513430-C-A 6645389-C-A **
15402285-C-A 13290405-C-A **
10884693-C-A **
13461828-G-A 11306152-G-A **
15477867-T-C 13365987-T-C **
16184347-A-G 14072467-A-G **
15871683-T-C 13759803-T-C **
28559004-C-A 26412857-C-A **
10938368-A-G **
27499350-AT-A 25353203-AT-A P1_Y2 **
15871680-T-C 13759800-T-C **
14065796-C-A 11945090-C-A **
8290868-G-T 8422827-G-T **
13291326-C-A 11135650-C-A **
28765495-A-G 26619348-A-G **
19231319-C-CTT 17119439-C-CTT 24×T**
10938374-T-G **
10986467-C-A **
13461087-C-T 11305411-C-T **
14354534-C-A 12233829-C-A **
18421610-A-G 16309730-A-G P6_Gap **
22138078-T-A 19976192-T-A **
13489479-G-A 11333803-G-A **
15871674-A-G 13759794-A-G **
2738863-C-A 2870822-C-A **
10995845-A-C **
10938357-C-T **
22739666-C-A 20577780-C-A **
6244489-A-ACG 6376448-A-ACG IR3_Dst **
14484426-C-G 12363695-C-G **
15801709-A-G 13689829-A-G **
56830331-T-TCCATTCCACTCCACG **
22890255-A-G 20728369-A-G **
2750860-G-T 2882819-G-T **
22890246-T-A 20728360-T-A **
24382067-A-G 22235920-A-G **
14274892-T-C 12154186-T-C **
14550267-C-A 12438468-C-A **
10982270-C-T **
18605357-C-A 16493477-C-A **
10982234-C-G **
21616787-C-A 19454901-C-A **
19415706-C-A 17303826-C-A **
13472219-C-A 11316543-C-A **
10760252-T-C **
13273302-C-A 11117626-C-A **
14313540-C-A 12192834-C-A **
2740437-C-A 2872396-C-A **
9456029-C-A 9618420-C-A **
21153564-G-T 18991678-G-T **
13478221-G-T 11322545-G-T **
10829328-A-ATTCCT **
10676910-C-A **
10760005-C-A **
19517298-C-A 17405418-C-A **
10757754-C-A **
15871690-A-C 13759810-A-C **
16057666-CTTTT-C 13945786-CTTTT-C 15×T***
15559250-CA-C 13447370-CA-C 9×A***
10682584-C-T ***
17912314-TTAA-T 15800434-TTAA-T A2333 8×TAA***
13446650-C-G 11290974-C-G ***
14847004-CAAAAA-C,CAAAA 12735070-CAAAAA-C,CAAAA 20×A***
10682507-C-CATTGTACTCT ***
21816384-C-A 19654498-C-A ***
22185943-CTT-C,CT 20024057-CTT-C,CT 13×T***
56832048-C-A ***
16988453-TA-T 14876573-TA-T 10×A***
21875760-C-A 19713874-C-A ***
22804688-C-A 20642802-C-A ***
23382570-C-A 21220684-C-A ***
23298615-C-A 21136729-C-A ***
23013499-T-C 20851613-T-C ***
23554096-C-A 21392210-C-A BY44193 ***
10682580-T-G ***
23004008-C-A 20842122-C-A ***
18763598-C-A 16651718-C-A ***
23332133-C-A 21170247-C-A ***
22793359-C-A 20631473-C-A ***
13254991-ATT-A 11099315-ATT-A 12×T***
56887107-G-T ***
14516440-C-A 12404641-C-A ***
21562049-T-TCA 19400163-T-TCA 18×CA***
58972526-A-C 56826379-A-C ***
21193736-C-A 19031850-C-A ***
13446690-CATTCC-C,CATTCT 11291014-CATTCC-C,CATTCT ***
22020578-C-A 19858692-C-A ***
3345908-C-A 3477867-C-A ***
8835383-A-AT 8967342-A-AT 10×T***
23053977-C-A 20892091-C-A ***
23771104-C-A 21609218-C-A ***
21658464-C-A 19496578-C-A ***
10931754-C-T ***
18632050-ATTTTGCATATTT-A 16520170-ATTTTGCATATTT-A ***
2860636-C-A 2992595-C-A ***
9400043-G-A 9562434-G-A ***
8859904-G-T 8991863-G-T ***
7975817-C-A 8107776-C-A ***
8859936-G-T 8991895-G-T ***
10807350-C-A ***
15257473-C-A 13145557-C-A ***
14880971-GA-G 12769041-GA-G 10×A***
15073585-G-A 12961675-G-A ***
13461049-C-T 11305373-C-T ***
13704964-A-G 11549288-A-G ***
9129993-C-A 9292384-C-A ***
27964790-A-AT 25818643-A-AT P1_Y2 10×T***
9515717-C-A 9678108-C-A ***
8756458-C-A 8888417-C-A ***
19526500-C-A 17414620-C-A ***
9806717-T-C 9969108-T-C ***
14356921-C-A 12236216-C-A ***
21094738-GA-G 18932852-GA-G 10×A***
9516751-CTT-C,CT 9679142-CTT-C,CT 14×T***
13461033-C-T 11305357-C-T ***
16988734-C-A 14876854-C-A ***
16631750-CT-C,CTT 14519870-CT-C,CTT 14×T***
13644648-C-A 11488972-C-A ***
13461051-C-T 11305375-C-T ***
14071354-CTTTTTT-C 11950648-CTTTTTT-C 25×T***
15649023-C-A 13537143-C-A ***
7136245-CAAA-C 7268204-CAAA-C 14×A***
21095108-C-A 18933222-C-A ***
17709257-G-A 15597377-G-A ***
11031998-C-A ***
7518493-CA-C,CAAA 7650452-CA-C,CAAA 19×A***
22940686-G-GT 20778800-G-GT 10×T***
4425590-C-A 4557549-C-A ***
13468998-T-G 11313322-T-G ***
7323228-G-GA 7455187-G-GA 10×A***
6704759-C-A 6836718-C-A ***
18753267-C-T 16641387-C-T ***
7084597-C-T 7216556-C-T ***
7539226-C-A 7671185-C-A ***
15786217-C-A 13674337-C-A ***
7662825-C-A 7794784-C-A ***
15951153-AT-A 13839273-AT-A ***
7698210-TCCTTTGTTCAA-T 7830169-TCCTTTGTTCAA-T ***
17311975-C-A 15200095-C-A ***
17224728-T-C 15112848-T-C ***
8145061-T-C 8277020-T-C ***
16778602-C-A 14666722-C-A ***
23473269-G-GT 21311383-G-GT 9×T***
16747313-C-A 14635433-C-A ***
16679099-ATTT-A,ATTTT 14567219-ATTT-A,ATTTT 25×T***
16620541-T-C 14508661-T-C ***
16447200-CACA-C,CA 14335320-CACA-C,CA ***
17568924-C-A 15457044-C-A BY115785 ***
15259409-C-A 13147493-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: E34785860000270727277025226
Used in age calculations860000270727277025226
Counts of SNPs76
Variant counts last updated 2019-09-10 00:14:35.



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