Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > ZP112 > Y31591

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
18276479-C-T 16164599-C-T P6_Prx A*
28816614-G-A 26670467-G-A A*
19691738-C-A 17579858-C-A P5_Prx A*
20635455-A-C 18473569-A-C P4_Prx A*
20720441-C-G 18558555-C-G P4_Prx A*
12914-A-G +
8702236-A-C 8834195-A-C BY160303 YY+
13996783-C-T 11876077-C-T BY160137 YY+
13671997-A-T 11516321-A-T BY210819 +
9831713-C-G 9994104-C-G BY160177 YY+
8819633-T-A 8951592-T-A BY160280 YY+
8791275-A-G 8923234-A-G BY160285 YY+
8507489-G-A 8639448-G-A BY160341 YY+
14658577-C-T 12546642-C-T BY160012 YY+
8102942-A-G 8234901-A-G BY160436 YY+
7320994-G-C 7452953-G-C BY32140 YY9×AC+
7250708-C-G 7382667-C-G BY160569 YY+
7035319-A-G 7167278-A-G BY160601 YY+
6896960-A-C 7028919-A-C BY160620 YY+
6824633-A-G 6956592-A-G BY160630 YY+
19439452-G-T 17327572-G-T S5456S5476 PF1786 F3050 M9294 YY+
2877779-G-A 3009738-G-A YY+
2853223-C-T 2985182-C-T BY160713 YY+
14334484-A-C 12213779-A-C BY160061 YY+
15516655-C-T 13404775-C-T BY159912 YY+
14706039-C-T 12594105-C-T BY160008 YY+
22467342-T-C 20305456-T-C BY221901 DYZ19 +
24892838-G-A 22746691-G-A BY226380 g1 +
24417765-CT-C 22271618-CT-C +
23535037-A-G 21373151-A-G BY158790 YY+
23377930-C-T 21216044-C-T BY158818 YY+
23046474-C-T 20884588-C-T BY158882 YY+
22419929-G-A 20258043-G-A BY41999 DYZ19 +
22480423-G-T 20318537-G-T BY224439 DYZ19 +
22235969-A-C 20074083-A-C BY213675 DYZ19 +
14708545-G-T 12596611-G-T YY+
21898407-C-T 19736521-C-T BY159068 YY+
21431676-G-A 19269790-G-A BY159154 YY+
21256910-T-C 19095024-T-C BY131476 YY+
19534157-A-T 17422277-A-T BY159220 YY+
18049686-G-A 15937806-G-A BY159483 YY+
17055453-T-C 14943573-T-C BY159680 YY+
2722889-G-C 2854848-G-C BY160746 YY+
2760508-G-A 2892467-G-A BY160733 YY+
7569510-GAT-G 7701469-GAT-G *
10940069-T-G **
11646090-A-C **
10990199-C-G **
11016334-CTCCAT-C **
13228225-C-T 11072549-C-T BY210025 **
13460902-C-A 11305226-C-A **
13461105-T-A 11305429-T-A **
13511686-A-G 11356010-A-G **
13604354-C-A 11448678-C-A **
8649789-CAAA-C 8781748-CAAA-C 13×A**
13705527-A-G 11549851-A-G **
11672825-T-C **
10884817-C-A **
13859363-T-G 11738657-T-G **
13972958-C-A 11852252-C-A FT116386 **
13975910-A-C 11855204-A-C **
13235589-C-T 11079913-C-T **
14214309-T-G 12093603-T-G **
13478174-G-C 11322498-G-C **
14552367-T-G 12440568-T-G **
14589034-C-A 12477234-C-A **
13478164-G-A 11322488-G-A **
10889841-A-G **
10868402-T-TA **
20700666-T-A 18538780-T-A P4_Prx **
9109957-C-A **
10837837-A-G **
10837833-T-G **
7325700-A-G 7457659-A-G **
4521518-C-A 4653477-C-A **
8139803-G-C 8271762-G-C FTA22902 **
18930703-C-A 16818823-C-A **
8768565-A-T 8900524-A-T **
24475009-C-A 22328862-C-A **
3759181-C-A 3891140-C-A **
11009260-C-A **
10846391-A-T **
9424466-T-C 9586857-T-C **
11003827-C-A **
10657256-A-G **
10752470-A-T **
10752476-CACCAT-C **
10769782-A-G **
10775900-C-A **
10818632-A-G **
10819955-G-T **
10846390-A-T **
7021872-C-A 7153831-C-A **
15218635-C-A 13106721-C-A **
7029957-C-A 7161916-C-A **
22869008-C-A 20707122-C-A **
6106080-A-C 6238039-A-C **
21115653-C-A 18953767-C-A **
21127294-T-C 18965408-T-C **
21235137-A-C 19073251-A-C **
56833283-C-G **
21574236-C-A 19412350-C-A **
10759389-A-C **
22045582-C-T 19883696-C-T **
6945992-C-A 7077951-C-A **
22508711-G-C 20346825-G-C DYZ19 **
3492167-C-A 3624126-C-A **
22739588-T-C 20577702-T-C **
22739594-A-C 20577708-A-C **
22991589-G-A 20829703-G-A FTA25188 **
13212515-C-A 11056839-C-A **
23037257-TG-T 20875371-TG-T **
24283326-AC-A 22137179-AC-A P3_t1 **
26114574-C-A 23968427-C-A P1_Y1 **
27029624-A-G 24883477-A-G P1_r4 **
56678009-G-A **
19535535-C-A 17423655-C-A **
19464900-C-A 17353020-C-A **
15476339-T-G 13364459-T-G **
16148073-G-T 14036193-G-T P8_Dst **
15476346-G-C 13364466-G-C **
15476347-A-T 13364467-A-T **
10935554-TTCCAG-T **
15689147-C-A 13577267-C-A **
15818480-C-G 13706600-C-G **
15924095-C-A 13812215-C-A **
15976562-T-A 13864682-T-A **
16001454-A-G 13889574-A-G **
16070610-C-A 13958730-C-A **
16599116-G-GA 14487236-G-GA 8×A**
19416798-A-G 17304918-A-G **
16831061-C-A 14719181-C-A FTA19194 **
16860833-A-C 14748953-A-C **
16988807-C-A 14876927-C-A **
10969084-A-T FT92137 **
17095296-A-C 14983416-A-C **
10892517-C-A **
18188733-G-A 16076853-G-A **
18195930-A-C 16084050-A-C **
19198115-A-T 17086235-A-T **
19274762-C-A 17162882-C-A **
10837852-A-T **
9075949-T-G 9238340-T-G **
6978189-T-A 7110148-T-A **
23476287-C-A 21314401-C-A **
13457758-T-A 11302082-T-A **
9996533-C-A 10158924-C-A **
23062754-C-A 20900868-C-A **
27889322-CACA-C 25743175-CACA-C P1_Y2 **
4356942-C-A 4488901-C-A **
17103831-G-T 14991951-G-T **
21888421-C-A 19726535-C-A **
24337316-T-G 22191169-T-G P3_t1 **
7322630-C-A 7454589-C-A **
13586039-C-A 11430363-C-A **
18910941-C-A 16799061-C-A **
23062330-C-A 20900444-C-A **
24450536-C-A 22304389-C-A **
11667496-C-A **
5870105-C-A 6002064-C-A **
10967458-G-T **
14070220-T-TA 11949514-T-TA 9×A**
17865284-C-A 15753404-C-A **
10979852-C-A **
10863831-C-T **
28618236-C-A 26472089-C-A **
10781665-G-T **
7134049-C-A 7266008-C-A **
19248536-G-T 17136656-G-T **
15696831-C-A 13584951-C-A **
18819615-C-A 16707735-C-A **
10752463-C-A **
5358940-C-A 5490899-C-A **
25937810-C-A 23791663-C-A P1_Y1 **
10759369-C-T **
14324615-C-A 12203909-C-A **
13441717-C-A 11286041-C-A **
22965159-C-A 20803273-C-A **
3389198-C-A 3521157-C-A **
10684291-C-A FT428945 **
10896339-A-T **
13233504-C-A 11077828-C-A **
7255208-C-A 7387167-C-A **
15177925-C-A 13066011-C-A **
14349269-C-A 12228564-C-A **
17492002-C-A 15380122-C-A **
10900220-CTCCAT-C **
28441809-C-A 26295662-C-A P1_gr2 **
15478841-C-A 13366961-C-A **
18740814-T-C 16628934-T-C **
24447070-AAGAG-A 22300923-AAGAG-A 9×AG**
10969073-T-C **
15700497-C-A 13588617-C-A **
17413306-C-A 15301426-C-A **
4427276-G-T 4559235-G-T **
2680438-AT-A 2812397-AT-A **
13488941-G-T 11333265-G-T **
15793058-C-A 13681178-C-A **
11026028-C-T **
11026027-C-A **
3103082-C-A 3235041-C-A **
3592614-C-A 3724573-C-A FTA25946 **
3831422-A-T 3963381-A-T **
4213234-T-A 4345193-T-A **
4356965-G-A 4488924-G-A **
4521782-C-A 4653741-C-A **
9596496-TG-T 9758887-TG-T IR3_Prx **
5017773-T-G 5149732-T-G **
5170250-G-C 5302209-G-C **
5577223-C-A 5709182-C-A **
14446508-C-A 12325781-C-A **
5895105-T-A 6027064-T-A **
6252988-T-A 6384947-T-A IR3_Dst **
6255784-A-T 6387743-A-T IR3_Dst **
6778926-G-A 6910885-G-A **
13952653-C-A 11831947-C-A **
6858766-A-T 6990725-A-T **
4473024-C-A 4604983-C-A **
13213598-C-A 11057922-C-A **
5818454-G-T 5950413-G-T **
26454969-C-A 24308822-C-A P1_Y1 **
13224752-G-A 11069076-G-A **
17029028-C-A 14917148-C-A **
17470878-G-A 15358998-G-A **
10973659-T-G **
13643814-C-A 11488138-C-A **
7235887-C-A 7367846-C-A **
16071325-T-C 13959445-T-C **
18127535-A-G 16015655-A-G **
5368308-G-T 5500267-G-T **
23801953-T-C 21640067-T-C ***
14701974-C-A 12590040-C-A ***
6427299-C-A 6559258-C-A ***
14686076-C-A 12574142-C-A ***
16494380-G-GAT 14382500-G-GAT 8×AT***
23277838-C-A 21115952-C-A ***
10799519-T-C ***
10942566-C-A ***
13716971-G-A 11561295-G-A ***
58976404-C-G 56830257-C-G ***
9510732-CCTCT-C 9673123-CCTCT-C 14×CT***
13446576-A-C 11290900-A-C ***
28792480-A-T 26646333-A-T ***
18585738-C-A 16473858-C-A ***
56849581-C-A ***
14900644-ATTTTTTTT-A 12788711-ATTTTTTTT-A 27×T***
19022525-A-G 16910645-A-G ***
16489410-C-A 14377530-C-A ***
18723224-G-T 16611344-G-T ***
56843150-C-A ***
16223543-G-A 14111663-G-A ***
19439452-G-GT 17327572-G-GT ***
10992975-A-C ***
10992988-C-G ***
10993002-T-C ***
16627698-GTATA-G,GTA 14515818-GTATA-G,GTA 12×TA***
56833302-ATTC-A ***
8470547-TC-T 8602506-TC-T ***
22914674-CAAAAAAA-C 20752788-CAAAAAAA-C 27×A***
13402470-C-A 11246794-C-A ***
13452842-A-C 11297166-A-C ***
9141735-C-A 9304126-C-A ***
8810831-C-A 8942790-C-A ***
21394704-C-A 19232818-C-A ***
18711324-A-G 16599444-A-G ***
13471015-T-A 11315339-T-A ***
23007466-G-T 20845580-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 351215938066076854557598716
Used in age calculations938066076854557598716
Counts of SNPs3131
Variant counts last updated 2022-11-22 04:11:12.

Big Tree Main Page