Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > A5001 > BY3275

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
292951
26107418-G-T 23961271-G-T P1_Y1 A*
25536003-A-G 23389856-A-G P1_gr1 A*
24875889-A-G 22729742-A-G BY226187 g1 +
23875861-T-C 21713975-T-C BY168844 +
13839505-T-C 11718799-T-C BY166762 4×GAATG+
8168874-T-C 8300833-T-C BY166310 YY+
7654779-G-A 7786738-G-A BY166161 YY+
21970122-A-C 19808236-A-C BY168458 YY+
6716079-G-C 6848038-G-C BY165959 YY+
24390571-C-T 22244424-C-T BY168876 Y+
17709553-G-T 15597673-G-T BY167661 YY+
8459477-G-A 8591436-G-A FGC51128 YY+
21893522-G-A 19731636-G-A YY*
22253375-T-C 20091489-T-C DYZ19 *
22254235-G-T 20092349-G-T DYZ19 *
5058833-G-A 5190792-G-A **
4461685-G-A 4593644-G-A **
3817612-G-A 3949571-G-A **
4215644-T-C 4347603-T-C **
4129237-G-A 4261196-G-A **
3272517-G-T 3404476-G-T **
2881244-C-T 3013203-C-T **
2854692-G-A 2986651-G-A **
2798912-C-T 2930871-C-T **
5200611-G-A 5332570-G-A **
17319949-GAGAA-G 15208069-GAGAA-G 4×AGAA**
5350247-T-C 5482206-T-C **
5350266-T-C 5482225-T-C **
6767693-C-G 6899652-C-G **
5350283-C-T 5482242-C-T **
5350284-C-T 5482243-C-T **
5384813-C-A 5516772-C-A **
19692987-AGC-A 17581107-AGC-A P5_Prx **
5871932-T-C 6003891-T-C **
6284375-T-A 6416334-T-A IR3_Dst **
6284386-T-A 6416345-T-A IR3_Dst **
19407542-T-G 17295662-T-G **
19330218-T-C 17218338-T-C **
6787360-C-A 6919319-C-A **
6861569-C-A 6993528-C-A **
6878024-T-A 7009983-T-A **
5350273-C-CAG 5482232-C-CAG **
56756836-G-T **
23476020-TG-T 21314134-TG-T **
13587752-T-A 11432076-T-A **
8069117-C-A 8201076-C-A **
23870971-A-G 21709085-A-G **
16734886-G-A 14623006-G-A **
8694254-C-A 8826213-C-A **
13811099-G-T 11690393-G-T **
6284394-T-A 6416353-T-A IR3_Dst **
15049400-C-A 12937491-C-A **
10977887-T-A **
20366789-G-A 18204903-G-A P5_Dst **
10977878-G-T **
10977871-T-A **
10977863-T-A **
10977853-C-T **
10977852-A-C **
10926462-G-A **
6878821-C-A 7010780-C-A **
20802702-A-G 18640816-A-G P4_Gap **
18009644-GA-G 15897764-GA-G P7_Dst 8×A**
7039965-C-A 7171924-C-A **
19998737-A-T 17886857-A-T P5_Prx **
7655260-A-C 7787219-A-C **
10977904-C-T **
15201283-C-A 13089369-C-A **
22871361-C-A 20709475-C-A **
18853471-T-C 16741591-T-C **
10884901-C-A **
13480496-A-T 11324820-A-T **
4070688-C-A 4202647-C-A **
15433616-C-A 13321736-C-A **
21130673-G-T 18968787-G-T **
10823666-C-A **
23870961-A-C 21709075-A-C **
19998739-A-T 17886859-A-T P5_Prx **
3951471-C-A 4083430-C-A **
19998771-A-T 17886891-A-T P5_Prx **
7109034-C-A 7240993-C-A **
6888463-A-T 7020422-A-T **
7617603-C-A 7749562-C-A **
7102104-T-A 7234063-T-A **
13495804-C-A 11340128-C-A **
14520869-C-A 12409070-C-A **
14022932-T-C 11902226-T-C **
13866164-G-C 11745458-G-C **
17485662-G-T 15373782-G-T **
13811112-T-TCTTCC 11690406-T-TCTTCC **
11660145-A-G **
13309629-C-A 11153953-C-A **
14761546-C-A 12649615-C-A **
11016388-A-T **
11016040-G-T **
11005020-A-C **
11005012-C-A **
11005008-C-A **
11004998-G-A **
14702022-T-C 12590088-T-C **
15012823-T-G 12900911-T-G **
10988806-A-G **
15992297-C-A 13880417-C-A **
17136389-A-T 15024509-A-T **
16476240-A-G 14364360-A-G **
16364123-C-A 14252243-C-A **
17201759-T-G 15089879-T-G **
17201833-T-G 15089953-T-G **
16002863-C-A 13890983-C-A **
15943578-C-T 13831698-C-T **
15065822-C-A 12953914-C-A **
15917695-C-A 13805815-C-A **
15786659-G-A 13674779-G-A **
15633015-C-A 13521135-C-A **
15515247-C-A 13403367-C-A **
15351117-A-T 13239236-A-T **
17363290-C-A 15251410-C-A **
17449300-C-A 15337420-C-A **
11004979-C-A **
10977917-ACTCAT-A **
7162202-C-A 7294161-C-A **
18322113-C-A 16210233-C-A P6_Prx **
9304950-C-T 9467341-C-T **
8831198-A-G 8963157-A-G **
18021229-C-A 15909349-C-A **
18322050-C-A 16210170-C-A P6_Prx **
8255822-TTTA-T 8387781-TTTA-T **
8253762-A-C 8385721-A-C **
7725811-C-A 7857770-C-A **
9937015-C-A 10099406-C-A **
7617644-G-T 7749603-G-T **
7617642-G-A 7749601-G-A **
7617629-AC-A 7749588-AC-A **
20936484-G-T 18774598-G-T P4_Dst **
7462630-C-A 7594589-C-A IR1_L **
7401135-C-A 7533094-C-A **
18818994-G-T 16707114-G-T **
9508461-C-A 9670852-C-A **
10666342-G-A **
10977905-C-T **
10940187-C-G **
10977841-C-T **
10961406-C-T **
10959811-A-C **
10959807-C-A **
10959770-CTTTCC-A **
10959765-C-A **
10926428-AAACAT-A **
10687594-CCATTCCATTCCATTCCATTT-C **
10926423-T-C **
17512700-C-A 15400820-C-A **
10894972-C-A **
10876741-C-T **
10876740-C-T **
17547674-T-G 15435794-T-G **
17580867-C-T 15468987-C-T **
20892335-A-G 18730449-A-G P4_Dst **
14998101-C-A 12886186-C-A **
10926461-T-C **
10969255-C-A **
10982595-C-A **
6000689-TA-T 6132648-TA-T 9×A**
8036188-CAA-C 8168147-CAA-C 12×A**
14622256-TA-T 12510454-TA-T 9×A**
10991250-C-A **
10969272-A-ACTGTG **
10849705-T-C **
10991266-A-T **
13705521-G-A 11549845-G-A **
10975838-T-C **
25579881-C-A 23433734-C-A P1_gr1 **
25579899-T-G 23433752-T-G P1_gr1 **
13705523-A-C 11549847-A-C **
22954614-C-A 20792728-C-A **
27829093-C-A 25682946-C-A P1_Y2 **
23438837-C-A 21276951-C-A **
25579908-G-T 23433761-G-T P1_gr1 **
23870992-C-T 21709106-C-T **
13936292-GGAAA-G 11815586-GGAAA-G 4×GAAA**
9535174-G-GT 9697565-G-GT IR3_Prx **
7567943-CAA-C 7699902-CAA-C 8×A**
10991237-T-C **
10991247-T-C **
10991242-T-C **
21296551-C-A 19134665-C-A FT56237 **
10959821-T-A **
8661305-C-A 8793264-C-A **
23870993-A-G 21709107-A-G **
10761197-G-T **
10760604-G-T **
17170400-T-A 15058520-T-A **
6040160-C-A 6172119-C-A **
10845649-T-A **
14458558-C-A 12337831-C-A 21×A**
2729970-C-A 2861929-C-A **
13927915-CA-C 11807209-CA-C **
21113047-T-C 18951161-T-C PF3417 **
28438188-CAAA-C 26292041-CAAA-C P1_gr2 31×A**
21552180-CAT-C 19390294-CAT-C **
28725886-C-A 26579739-C-A **
16692129-A-ACC 14580249-A-ACC **
56756848-G-T **
23411427-T-G 21249541-T-G **
56840516-C-A **
28613117-T-C 26466970-T-C **
13267472-G-GGT 11111796-G-GGT **
9930537-C-A 10092928-C-A **
9891742-T-C 10054133-T-C Z11977 **
6911568-AAAATAAATAAAT-A 7043527-AAAATAAATAAAT-A 11×AAAT**
21163023-C-T 19001137-C-T Y206 M758 **
4459062-G-A 4591021-G-A **
23476032-G-GT 21314146-G-GT 10×T**
9438130-G-T 9600521-G-T **
21482762-C-CTT 19320876-C-CTT 19×T**
10845708-T-A **
20669281-GT-G 18507395-GT-G P4_Prx **
11016382-C-A **
11016371-G-C **
25881878-C-A 23735731-C-A P1_Y1 **
27967253-C-A 25821106-C-A P1_Y2 **
28469326-G-A 26323179-G-A **
14143412-G-GAAA 12022706-G-GAAA 12×A**
28607956-C-A 26461809-C-A **
28515207-C-A 26369060-C-A **
16612550-C-A 14500670-C-A **
10959762-G-T **
14981949-C-A 12870017-C-A **
13489115-T-A 11333439-T-A **
28548055-G-T 26401908-G-T **
13811149-G-C 11690443-G-C **
11005001-A-C **
8468098-G-T 8600057-G-T **
18195154-A-ATT 16083274-A-ATT 29×T**
2683414-C-A 2815373-C-A **
23870991-C-T 21709105-C-T **
56844116-G-T **
10959822-T-C **
11022154-T-A **
13488983-A-T 11333307-A-T **
13488998-C-A 11333322-C-A **
14957726-C-A 12845801-C-A **
9830930-C-A 9993321-C-A **
2935082-G-GT 3067041-G-GT 10×T**
14815998-C-A 12704069-C-A **
10991252-T-C **
7617641-T-C 7749600-T-C **
56756808-C-G **
56850676-G-T **
10753011-TC-T **
7617619-A-G 7749578-A-G **
11650939-A-T **
14195175-T-C 12074469-T-C **
17122115-C-A 15010235-C-A **
18190881-C-T 16079001-C-T **
10761211-A-C **
10761174-A-C **
11650967-G-T **
10926793-G-A **
21665695-T-C 19503809-T-C **
10820514-C-A **
10849165-C-A **
16491439-C-A 14379559-C-A **
21241712-C-A 19079826-C-A **
21386382-G-T 19224496-G-T **
11643695-A-T **
6535396-C-A 6667355-C-A **
14539225-C-A 12427426-C-A **
16342148-C-A 14230268-C-A **
13485631-G-T 11329955-G-T **
23870973-A-G 21709087-A-G **
23335820-C-A 21173934-C-A **
10791303-C-A **
11038060-A-C **
6827954-C-A 6959913-C-A **
10845661-CA-C **
22874605-A-T 20712719-A-T **
10845717-A-ATTTCT **
22874597-G-T 20712711-G-T **
13626769-C-A 11471093-C-A **
10847115-A-C **
22647244-C-A 20485358-C-A **
11013279-C-A **
22598252-C-CAAA 20436366-C-CAAA 10×A**
18982547-CAAAA-C 16870667-CAAAA-C 39×A**
16948469-G-A 14836589-G-A **
21353376-C-A 19191490-C-A **
7994352-C-A 8126311-C-A **
13468108-C-A 11312432-C-A **
21923907-G-T 19762021-G-T **
21923926-T-C 19762040-T-C **
10783635-T-C **
17170390-A-C 15058510-A-C **
18650483-C-A 16538603-C-A **
11038059-A-C **
10991236-G-C **
10991231-G-T **
10940783-C-A **
10894653-C-A **
21802527-T-A 19640641-T-A ***
21694038-C-A 19532152-C-A ***
21549197-T-TA 19387311-T-TA ***
21802552-A-G 19640666-A-G ***
28640597-C-A 26494450-C-A ***
17860194-T-C 15748314-T-C ***
22081172-A-G 19919286-A-G ***
24462214-G-T 22316067-G-T ***
19004685-T-C 16892805-T-C ***
21700650-A-G 19538764-A-G ***
7698515-C-A 7830474-C-A ***
16906841-G-T 14794961-G-T ***
15557433-T-TAA 13445553-T-TAA 11×A***
10754979-T-A,C ***
10746909-ACTC-A ***
8533407-CT-C,CTT 8665366-CT-C,CTT 14×T***
58979503-C-T 56833356-C-T ***
14200742-TTAGATAGATAGA-T,TTAGA 12080036-TTAGATAGATAGA-T,TTAGA 15×TAGA***
13462226-G-T 11306550-G-T ***
10845698-T-G ***
56840744-G-T ***
4374664-C-A 4506623-C-A ***
2860458-GTTTT-G 2992417-GTTTT-G 18×T***
13489331-G-C 11333655-G-C ***
15904149-CAA-C,CAAA 13792269-CAA-C,CAAA 20×A***
15324319-C-CT 13212437-C-CT 25×T***
10821928-A-C ***
23003975-CT-C 20842089-CT-C 9×T***
7328351-TAAA-T 7460310-TAAA-T 14×A***
58979100-G-T 56832953-G-T ***
14992933-TCA-T 12881018-TCA-T 11×CA***
7157737-G-GA 7289696-G-GA 9×A***
22887687-CTTT-C 20725801-CTTT-C 15×T***
58980699-C-T 56834552-C-T ***
18965642-CTTTTTT-C 16853762-CTTTTTT-C 19×T***
9730464-A-ATG 9892855-A-ATG IR3_Prx 11×TG***
15580149-CA-C 13468269-CA-C 10×A***
9771054-ATT-A,ATTT 9933445-ATT-A,ATTT 16×T***
17353804-T-TA 15241924-T-TA 9×A***
10964823-A-T ***
10964841-C-G ***
17946635-CTT-C,CTTT 15834755-CTT-C,CTTT 20×T***
10770673-C-A ***
10770709-G-T ***
10808650-C-G ***
10754915-G-A,T ***
16194776-ATT-A,ATTT 14082896-ATT-A,ATTT 13×T***
9980718-A-G 10143109-A-G ***
7131434-C-A 7263393-C-A ***
7256019-G-T 7387978-G-T ***
8058658-A-G 8190617-A-G ***
8604181-CT-C,CTT 8736140-CT-C,CTT 11×T***
8672863-G-T 8804822-G-T ***
9896024-C-T 10058415-C-T ***
10808615-CCA-CAA,T ***
6368876-T-G 6500835-T-G ***
10809654-A-T ***
10916480-C-A ***
13811151-A-ATGGATTCAACTCGAT 11690445-A-ATGGATTCAACTCGAT ***
15116415-G-T 13004502-G-T ***
15281261-C-A 13169360-C-A ***
16027942-G-A 13916062-G-A ***
6675956-C-A 6807915-C-A ***
5688081-C-A 5820040-C-A ***
11015132-G-A,C ***
17387651-GT-G 15275771-GT-G 10×T***
10785264-A-G ***
28598654-C-A 26452507-C-A ***
18263227-G-T 16151347-G-T ***
19523470-C-A 17411590-C-A ***
14557503-G-T 12445704-G-T ***
16422194-C-A 14310314-C-A ***
56839477-G-A ***
10663392-CTTCTT-C,CTCTT ***
7142647-C-A 7274606-C-A ***
21196375-C-A 19034489-C-A ***
14053650-C-A 11932944-C-A ***
10964776-C-T ***
18401463-C-A 16289583-C-A P6_Gap ***
18892854-GA-G,GAA 16780974-GA-G,GAA 13×A***
56861825-A-AC,C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 292951891342373024417238090
Used in age calculations891342373024417238090
Counts of SNPs78
Variant counts last updated 2019-09-10 00:14:34.



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