Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > S21184 > S19290 > S16785

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
3762
18347548-C-A 16235668-C-A P6_Prx A*
26122222-T-G 23976075-T-G P1_Y1 A*
25946565-A-AT 23800418-A-AT P1_Y1 9×TA*
20784444-C-T 18622558-C-T P4_Prx A*
22305424-T-A 20143538-T-A DYZ19 A*
25934170-G-A 23788023-G-A P1_Y1 A*
26118691-G-A 23972544-G-A P1_Y1 A*
22256950-C-T 20095064-C-T DYZ19 A*
22307561-G-C 20145675-G-C DYZ19 A*
6342243-A-G 6474202-A-G A*
16630943-C-T 14519063-C-T BY109077 YY+
8483567-G-A 8615526-G-A BY160348 YY+
22175230-TG-T 20013344-TG-T +
7688767-A-G 7820726-A-G BY160493 YY+
8011577-C-A 8143536-C-A BY69337 YY+
14244806-CAAG-C 12124100-CAAG-C +
8257534-C-T 8389493-C-T YY+
8295354-A-G 8427313-A-G BY160402 YY+
8309805-C-A 8441764-C-A BY160394 YY+
8490265-T-G 8622224-T-G BY160347 YY+
16906058-T-G 14794178-T-G BY159701 YY+
9083452-C-T 9245843-C-T BY160239 Y+
9741578-C-T 9903969-C-T BY160189 IR3_Prx +
19347380-G-T 17235500-G-T BY159257 YY+
15498571-G-A 13386691-G-A BY159914 YY+
15653226-A-C 13541346-A-C BY159891 Y+
16358050-C-T 14246170-C-T BY159814 YY+
18655655-C-A 16543775-C-A BY159391 YY+
17972370-T-C 15860490-T-C BY159501 YY+
19233961-AT-A 17122081-AT-A +
29629-C-T +
7613536-A-G 7745495-A-G BY160507 YY+
22441114-C-T 20279228-C-T BY218979 DYZ19 +
22728093-A-G 20566207-A-G BY158937 YY+
22797155-T-A 20635269-T-A BY158930 YY+
23406589-A-G 21244703-A-G BY158811 YY+
23732817-TC-T 21570931-TC-T +
27851-A-G +
22319616-C-T 20157730-C-T DYZ19 *
23481833-AT-A 21319947-AT-A 10×T*
10882739-T-A **
10904603-A-G **
10899085-C-T **
5367700-G-T 5499659-G-T **
10894276-T-C **
10887018-C-T **
10878830-A-T **
10882002-T-G **
10881848-T-A **
10880723-C-T **
10878677-T-A **
10867416-G-T **
10851813-C-T **
6064665-C-A 6196624-C-A **
10912032-G-A **
10929137-C-A **
10916499-G-T **
10990740-T-G **
13217148-G-A 11061472-G-A **
13214136-G-C 11058460-G-C **
13212496-G-C 11056820-G-C **
11037470-C-A **
11033740-C-T **
11026107-C-G **
10980544-T-C **
10925820-C-T **
10976451-C-A **
10974904-T-G **
10974899-T-G **
10973224-C-G **
10949408-C-A **
6223606-A-G 6355565-A-G IR3_Dst **
10928070-C-T **
10842620-T-A **
10814896-C-T **
10836213-T-A **
9957827-C-T 10120218-C-T **
7040877-T-C 7172836-T-C **
7135384-TA-T 7267343-TA-T **
10660888-C-A **
9975088-T-G 10137479-T-G **
9957855-C-A 10120246-C-A **
9957829-G-A 10120220-G-A **
9957815-G-C 10120206-G-C **
10690173-G-T **
7141878-G-A 7273837-G-A **
9538014-A-C 9700405-A-C IR3_Prx **
7150502-C-A 7282461-C-A **
7332926-T-C 7464885-T-C **
7370264-G-T 7502223-G-T **
7423044-C-A 7555003-C-A **
7646580-C-A 7778539-C-A **
10689543-C-A **
7000503-A-G 7132462-A-G **
10823273-C-A **
6911407-T-G 7043366-T-G **
10814901-C-T **
10813572-C-G **
6341237-A-G 6473196-A-G IR3_Dst **
10813570-T-C **
6751374-C-A 6883333-C-A **
10805359-T-A **
10778524-T-A **
13460445-GC-G 11304769-GC-G **
10776794-T-C **
10765843-A-T **
10746599-ACTACC-A **
6911414-T-G 7043373-T-G **
10746560-T-C **
10746535-C-A **
10692809-T-C **
13460425-G-C 11304749-G-C **
13911782-T-A 11791076-T-A **
13468004-C-T 11312328-C-T **
19815071-G-T 17703191-G-T P5_Prx **
20603834-G-T 18441948-G-T P5_Dst **
20594759-AAAAAAT-A 18432873-AAAAAAT-A P5_Dst **
20594755-T-G 18432869-T-G P5_Dst **
20594710-G-T 18432824-G-T P5_Dst **
20420691-C-A 18258805-C-A P5_Dst **
19958247-G-T 17846367-G-T P5_Prx **
19815076-G-T 17703196-G-T P5_Prx **
19815056-C-A 17703176-C-A P5_Prx **
20793453-A-AATAT 18631567-A-AATAT P4_Prx 12×AT**
19815037-C-A 17703157-C-A P5_Prx **
19679122-C-A 17567242-C-A P5_Prx **
19669636-T-G 17557756-T-G P5_Prx **
18905249-C-A 16793369-C-A **
18789804-A-G 16677924-A-G **
18121840-T-C 16009960-T-C **
18086091-T-C 15974211-T-C **
18042942-A-G 15931062-A-G **
20755568-A-T 18593682-A-T P4_Prx **
21467888-C-A 19306002-C-A **
17622732-T-G 15510852-T-G **
26152099-CT-C 24005952-CT-C P1_Y1 **
56724949-G-T **
56724908-G-T **
56724864-G-T **
28685343-A-T 26539196-A-T **
28494064-G-T 26347917-G-T **
27733611-G-T 25587464-G-T P1_Y2 **
27484436-G-T 25338289-G-T P1_Y2 **
26354485-T-G 24208338-T-G P1_Y1 **
25556083-C-A 23409936-C-A P1_gr1 **
21791497-G-T 19629611-G-T **
24296320-A-C 22150173-A-C P3_t1 **
24148495-A-G 22002348-A-G P3_b1 **
23609329-C-A 21447443-C-A **
22809131-C-A 20647245-C-A **
22788622-C-A 20626736-C-A **
22715161-AAAAAAAG-A 20553275-AAAAAAAG-A **
22660942-T-C 20499056-T-C **
22505582-G-T 20343696-G-T DYZ19 **
17859464-T-C 15747584-T-C **
17315404-GTAGAAAACCA-G 15203524-GTAGAAAACCA-G **
13468036-A-C 11312360-A-C **
13859862-A-ACCCTC 11739156-A-ACCCTC **
14295423-T-C 12174717-T-C **
14239306-T-G 12118600-T-G **
14121459-T-C 12000753-T-C **
14000432-A-C 11879726-A-C **
13945974-G-A 11825268-G-A **
4873781-A-C 5005740-A-C **
13896166-C-T 11775460-C-T **
13859864-G-C 11739158-G-C **
13859852-A-C 11739146-A-C **
14456376-C-T 12335649-C-T **
13809776-A-C 11689070-A-C **
11669630-GA-G **
11669284-A-C **
11643977-T-A **
13698792-G-C 11543116-G-C **
13698768-T-A 11543092-T-A **
13698763-G-T 11543087-G-T **
13564367-G-A 11408691-G-A **
14349963-T-C 12229258-T-C **
14558261-TA-T 12446462-TA-T **
17315340-C-A 15203460-C-A **
15498155-T-C 13386275-T-C **
16710238-G-T 14598358-G-T **
16465909-G-T 14354029-G-T **
16274128-C-A 14162248-C-A **
16216816-C-T 14104936-C-T **
16089864-C-T 13977984-C-T **
15809096-C-T 13697216-C-T **
15676485-C-A 13564605-C-A **
15584934-C-A 13473054-C-A **
15498147-AT-A 13386267-AT-A **
14574575-C-A 12462775-C-A **
15498141-C-A 13386261-C-A **
15498084-C-A 13386204-C-A **
15498075-G-C 13386195-G-C **
15498059-C-T 13386179-C-T **
15498043-G-C 13386163-G-C **
15498042-G-A 13386162-G-A **
15370568-T-C 13258688-T-C **
15285567-C-G 13173666-C-G **
4964844-A-C 5096803-A-C **
24751243-A-AT 22605096-A-AT P3_b2 11×T**
4697069-C-A 4829028-C-A **
3849134-AT-A 3981093-AT-A 10×T**
28460840-C-A 26314693-C-A **
23720015-A-AG 21558129-A-AG **
2718881-C-CTT 2850840-C-CTT 21×T**
28805887-G-A 26659740-G-A **
15498128-C-A 13386248-C-A **
10892578-C-CATACT **
10951685-T-G **
13460719-C-A 11305043-C-A **
10672191-G-T **
10883803-G-T **
10672188-G-A **
10672181-C-CTCCAA **
10951014-T-C **
10772718-A-C **
20629092-CT-C 18467206-CT-C P4_Prx **
14490823-C-A 12370092-C-A **
28818964-T-A 26672817-T-A **
16450382-C-A 14338502-C-A **
11026020-C-T **
28816071-C-G 26669924-C-G **
18270297-C-A 16158417-C-A **
10955021-C-A **
4504692-T-C 4636651-T-C **
28635561-C-A 26489414-C-A **
10814316-T-A **
13988993-A-G 11868287-A-G **
10804905-C-A **
56839013-A-G **
56839012-C-T **
26421470-T-G 24275323-T-G P1_Y1 **
27810372-G-T 25664225-G-T P1_Y2 **
21678025-C-A 19516139-C-A **
14605126-C-A 12493328-C-A **
20824827-C-A 18662941-C-A P4_Gap **
7199338-A-T 7331297-A-T **
10765841-A-T **
18039366-ATTTTT-A 15927486-ATTTTT-A 30×T**
18527774-G-T 16415894-G-T P6_Dst **
10896317-C-A **
4665194-C-A 4797153-C-A **
11033693-C-A **
27733752-G-C 25587605-G-C P1_Y2 **
21836598-C-A 19674712-C-A **
9416731-G-GTT 9579122-G-GTT 23×T**
10836619-C-A **
17831207-CTTT-C 15719327-CTTT-C 17×T**
10804910-C-T **
18758891-C-A 16647011-C-A **
14795080-C-CT 12683151-C-CT 24×T**
16886914-C-A 14775034-C-A **
11024632-CG-C **
23241973-TTG-T 21080087-TTG-T **
10754974-T-C **
8216571-AT-A 8348530-AT-A 9×T**
13468047-G-A 11312371-G-A **
16505988-C-A 14394108-C-A Y96525 31×T**
13460479-C-A 11304803-C-A **
58988437-T-A 56842290-T-A **
58837622-T-C 56753249-A-G **
13859849-G-A 11739143-G-A **
58837625-C-T 56753246-G-A **
22360174-G-C 20198288-G-C DYZ19 **
17500222-CCT-C 15388342-CCT-C **
8379148-T-C 8511107-T-C **
58857159-G-T 56733712-C-A **
28791130-A-T 26644983-A-T **
15342653-T-TAA 13230772-T-TAA 11×A**
10983930-T-C **
10827917-T-C **
7580021-G-A 7711980-G-A **
11002244-G-C FT48477 **
14609824-ATAT-A 12498026-ATAT-A **
10973252-G-C **
10799449-A-C **
28818200-T-A 26672053-T-A **
10987179-T-G **
8288863-C-A 8420822-C-A **
10799647-C-T **
10691024-CTTCCATTCCATTCCA-C **
23350626-CTTT-C 21188740-CTTT-C 21×T**
10849645-C-G **
11033728-C-T **
10804924-CCTTT-C **
10804922-A-C **
10894213-C-A **
20637584-T-TAGATAG 18475698-T-TAGATAG P4_Prx **
16034337-T-TA 13922457-T-TA 12×A**
10851126-GC-G **
7414269-C-A 7546228-C-A **
10889229-A-C **
3251858-C-A 3383817-C-A **
11013962-C-A **
7270415-C-T 7402374-C-T **
13468041-G-C 11312365-G-C **
10954491-C-A **
8723670-C-A 8855629-C-A **
7369097-C-A 7501056-C-A **
20229613-A-C 18067727-A-C P5_Dst **
10973194-C-T **
11025226-T-C **
10829724-C-A **
27757886-C-A 25611739-C-A P1_Y2 **
10973219-C-A **
10783273-A-T **
13698779-T-A 11543103-T-A **
24887696-A-C 22741549-A-C g1 **
10946580-A-T **
10779000-C-G **
11647781-G-T **
10842634-T-G **
11026023-C-A **
14274051-C-A 12153345-C-A **
15498126-G-A 13386246-G-A **
15741565-G-T 13629685-G-T **
23832901-C-T 21671015-C-T **
10746585-T-C **
11022008-C-A **
15498138-G-A 13386258-G-A **
4471459-C-A 4603418-C-A **
4382476-GAAAGAAAGGAC-G 4514435-GAAAGAAAGGAC-G **
4250771-C-A 4382730-C-A **
3964868-C-A 4096827-C-A **
3831011-G-A 3962970-G-A **
3491261-C-A 3623220-C-A **
3334855-T-G 3466814-T-G **
3111122-C-A 3243081-C-A **
3043236-G-T 3175195-G-T **
19775333-TTGA-T 17663453-TTGA-T P5_Prx **
10942301-A-C **
17730332-C-A 15618452-C-A **
10979089-C-A **
10755231-C-G **
15733708-CAA-C 13621828-CAA-C 11×A**
10755281-C-G **
13460245-C-G 11304569-C-G **
13355492-C-A 11199816-C-A **
3658742-ATATT-A 3790701-ATATT-A 4×TATT**
11004409-C-A **
56855733-C-A **
13593598-C-A 11437922-C-A **
13847233-C-T 11726527-C-T **
10814895-C-A **
18398188-CACACAT-C 16286308-CACACAT-C P6_Gap **
10952904-C-A **
10946571-C-A **
11026087-C-T **
56850398-G-T **
13468012-A-T 11312336-A-T **
10813579-T-C **
10755277-G-T **
19669671-T-G 17557791-T-G P5_Prx **
10784013-C-A **
20368109-T-TC 18206223-T-TC P5_Dst **
13988984-G-A 11868278-G-A **
4567093-C-A 4699052-C-A **
10842606-A-T **
10842611-C-G **
10842616-A-T **
22963541-C-A 20801655-C-A **
10842623-T-C **
13217872-C-A 11062196-C-A **
10838376-C-A **
18086062-G-T 15974182-G-T **
10842631-G-A **
10690972-C-A **
11026047-C-G **
10656885-C-G **
13940973-A-G 11820267-A-G ***
11016796-T-C ***
23441185-C-A 21279299-C-A ***
9944103-A-G 10106494-A-G ***
58979369-A-C 56833222-A-C ***
13849982-GA-G 11729276-GA-G ***
24666286-TCTGC-T 22520139-TCTGC-T P3_b2 ***
3332155-G-A 3464114-G-A ***
58979394-T-G 56833247-T-G ***
13484708-G-C 11329032-G-C ***
13484675-C-A 11328999-C-A ***
13484690-AAC-A 11329014-AAC-A ***
10057301-C-A 10219692-C-A ***
17833231-G-GT 15721351-G-GT 9×T***
22894151-GAAAAAAAAAAAA-G,GA 20732265-GAAAAAAAAAAAA-G,GA 28×A***
10955486-C-A ***
23241984-C-A 21080098-C-A ***
24405135-C-A 22258988-C-A ***
17355936-C-A 15244056-C-A ***
10992788-T-G ***
13484677-GC-G 11329001-GC-G ***
13461829-GGCA-G 11306153-GGCA-G ***
10753561-T-C ***
15940306-CAAAAA-C 13828426-CAAAAA-C 24×A***
18857575-CTTT-C,CTT 16745695-CTTT-C,CTT 15×T***
10885216-CC-C,CT ***
18965956-C-A 16854076-C-A ***
21299139-C-A 19137253-C-A ***
10755392-A-CGT,T ***
13489081-G-T 11333405-G-T ***
15424410-C-T 13312530-C-T ***
15380236-C-T 13268356-C-T ***
28772074-C-A 26625927-C-A ***
14910813-TTTT-T,TTTTG 12798880-TTTT-T,TTTTG ***
10859430-C-A ***
10669521-T-C,TC ***
7626187-G-GTT 7758146-G-GTT 11×T***
13885857-CT-C,CTT 11765151-CT-C,CTT 19×T***
6114327-G-A 6246286-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3762993450980826267947310
Used in age calculations993450980826267947310
Counts of SNPs1919
Variant counts last updated 2019-09-10 00:14:33.



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