Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > BY64123

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B278868
19718489-A-G 17606609-A-G P5_Prx A*
28810597-G-T 26664450-G-T A*
56834078-A-G A*
28810602-G-T 26664455-G-T A*
24279044-A-G 22132897-A-G P3_t1 A*
6338981-T-A 6470940-T-A IR3_Dst A*
13712800-A-T 11557124-A-T A*
19718853-T-A 17606973-T-A P5_Prx A*
22276743-T-C 20114857-T-C DYZ19 A*
17989895-C-T 15878015-C-T P7_Prx YA*
20654242-G-A 18492356-G-A P4_Prx A*
15454-G-T +
21749327-C-T 19587441-C-T BY171193 YY+
21703943-C-G 19542057-C-G BY171177 YY+
16710997-T-A 14599117-T-A BY170389 YY+
19501710-G-T 17389830-G-T BY171021 YY+
9397420-C-G 9559811-C-G BY169712 YY+
8806398-C-A 8938357-C-A BY169619 YY+
18207948-C-T 16096068-C-T BY120856 YY+
19377946-G-C 17266066-G-C Z10972 V4062 YY+
22234125-A-G 20072239-A-G DYZ19 *
22255286-C-A 20093400-C-A BY214255 DYZ19 *
14986616-TTCTCTCTCTCTC-T 12874684-TTCTCTCTCTCTC-T 17×TC*
13722877-A-AGAATGGAATG 11567201-A-AGAATGGAATG 10×GAATG*
10771683-C-G **
8151551-T-G 8283510-T-G **
8660550-C-CAA 8792509-C-CAA 18×A**
8661850-C-A 8793809-C-A **
28555108-C-A 26408961-C-A **
9063811-T-C 9226202-T-C **
28530941-C-T 26384794-C-T **
9416952-A-T 9579343-A-T **
9625136-C-A 9787527-C-A IR3_Prx **
9732892-TCTC-T 9895283-TCTC-T IR3_Prx **
9943071-C-A 10105462-C-A **
10043527-C-A 10205918-C-A **
10657089-C-A **
10668001-C-T **
10668014-C-A **
10779450-C-T **
7866711-T-A 7998670-T-A **
10779455-T-C **
10796124-T-TGCCAC **
10889695-C-A **
10903364-A-G **
10921509-T-TCCATCCCATC **
10922020-T-A **
10943738-C-T **
10943748-C-T **
10944012-C-A **
10948781-G-T **
10986586-G-T **
10993655-A-G **
10994232-C-T **
11009230-C-A **
7896844-T-C 8028803-T-C **
23505165-A-AT 21343279-A-AT **
13218079-GA-G 11062403-GA-G **
6149727-G-T 6281686-G-T IR3_Dst **
3633505-G-T 3765464-G-T **
3850132-A-G 3982091-A-G **
4049662-G-T 4181621-G-T **
4215310-C-A 4347269-C-A **
4215320-G-A 4347279-G-A **
4353779-T-C 4485738-T-C **
5015056-G-T 5147015-G-T **
5228378-GT-G 5360337-GT-G **
5502743-C-A 5634702-C-A **
56851355-T-C **
5550280-GTT-G 5682239-GTT-G 39×T**
5645083-A-T 5777042-A-T **
5722535-C-A 5854494-C-A **
6073568-T-C 6205527-T-C **
28662386-C-A 26516239-C-A **
7448409-A-G 7580368-A-G IR1_L **
6576633-A-G 6708592-A-G **
28629464-A-G 26483317-A-G **
6664376-G-T 6796335-G-T **
6825567-G-T 6957526-G-T **
6847901-T-C 6979860-T-C **
7134801-G-T 7266760-G-T **
7201630-C-T 7333589-C-T 11×T**
7240811-C-G 7372770-C-G **
7248577-T-C 7380536-T-C **
7285420-A-G 7417379-A-G **
7332694-T-A 7464653-T-A **
7418575-G-T 7550534-G-T **
7446987-C-A 7578946-C-A IR1_L **
7448403-A-G 7580362-A-G IR1_L **
11021055-C-A **
13229656-T-C 11073980-T-C **
23438246-T-A 21276360-T-A **
25894209-T-C 23748062-T-C P1_Y1 **
19198139-T-A 17086259-T-A **
19246812-G-C 17134932-G-C **
27535289-C-A 25389142-C-A P1_Y2 **
26366370-C-T 24220223-C-T P1_Y1 **
20364236-T-A 18202350-T-A P5_Dst **
20392245-G-T 18230359-G-T P5_Dst **
20458497-G-T 18296611-G-T P5_Dst **
26253562-A-T 24107415-A-T P1_Y1 **
20978386-C-CAT 18816500-C-CAT P4_Dst **
21002511-A-T 18840625-A-T P4_Dst **
21201206-C-A 19039320-C-A **
21297580-C-T 19135694-C-T **
21438214-T-G 19276328-T-G **
21476390-C-A 19314504-C-A **
21614800-C-A 19452914-C-A **
18701792-T-G 16589912-T-G **
21617678-T-C 19455792-T-C **
24474903-C-A 22328756-C-A **
24384897-C-G 22238750-C-G **
22055530-CA-C 19893644-CA-C **
22207253-C-A 20045367-C-A **
22228108-A-G 20066222-A-G DYZ19 **
23952682-C-A 21806535-C-A **
23810460-C-T 21648574-C-T **
23807550-CAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGA-C 21645664-CAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGA-C **
22836708-C-A 20674822-C-A **
22916752-C-A 20754866-C-A **
23188237-A-G 21026351-A-G **
23199769-C-A 21037883-C-A **
23438237-T-C 21276351-T-C **
18728641-C-G 16616761-C-G **
18511576-AT-A 16399696-AT-A P6_Dst **
13367407-G-T 11211731-G-T **
15486167-T-C 13374287-T-C **
13595086-G-T 11439410-G-T **
13696249-C-T 11540573-C-T **
13696323-G-T 11540647-G-T **
13705499-T-TCATCC 11549823-T-TCATCC **
13928401-C-A 11807695-C-A **
14050688-C-A 11929982-C-A **
14286098-T-C 12165392-T-C **
14326542-A-T 12205836-A-T **
14781028-C-A 12669098-C-A **
14826568-GTAGAGA-G 12714635-GTAGAGA-G **
3549241-T-G 3681200-T-G **
15115570-A-C 13003657-A-C **
15127817-T-C 13015904-T-C **
15211006-GACTA-G 13099092-GACTA-G **
15848841-G-T 13736961-G-T **
18147588-C-G 16035708-C-G **
17111296-T-A 14999416-T-A **
18106611-TA-T 15994731-TA-T **
27823608-G-T 25677461-G-T P1_Y2 **
17628283-C-A 15516403-C-A **
17622209-C-A 15510329-C-A **
17183597-C-G 15071717-C-G **
17176195-G-T 15064315-G-T **
17004647-T-G 14892767-T-G **
15924231-T-G 13812351-T-G **
16993875-A-G 14881995-A-G **
28030730-T-C 25884583-T-C P1_Y2 **
16278439-AC-A 14166559-AC-A **
16070205-C-A 13958325-C-A **
16048985-A-G 13937105-A-G **
16006128-T-A 13894248-T-A **
3549246-T-G 3681205-T-G **
9654389-AGAAG-A 9816780-AGAAG-A IR3_Prx **
3467588-A-ATG 3599547-A-ATG **
10658992-TC-T **
10659034-G-A **
10659027-T-G **
10659019-C-G **
10659018-C-T **
10659008-A-C **
10659005-C-G **
10658983-A-C **
10659049-C-A **
10658980-C-A **
10658979-C-G **
10658956-C-T **
10658953-C-G **
18465469-GAAAA-G 16353589-GAAAA-G P6_Dst 26×A**
19558130-C-A 17446250-C-A **
14176281-G-C 12055575-G-C **
10659040-C-T **
10912694-G-A **
28549144-G-T 26402997-G-T **
17575480-ATTTT-A 15463600-ATTTT-A 37×T**
14118210-C-A 11997504-C-A **
8468092-C-A 8600051-C-A **
21222028-C-A 19060142-C-A **
10659013-C-T **
17840425-CTT-C 15728545-CTT-C 10×T**
15193467-C-A 13081553-C-A **
24875690-C-A 22729543-C-A g1 **
16445661-C-A 14333781-C-A **
3369837-C-T 3501796-C-T **
23337112-C-A 21175226-C-A **
13468108-C-A 11312432-C-A **
10760723-C-T **
7821104-C-A 7953063-C-A **
15424639-GAA-G 13312759-GAA-G 10×A**
14450542-C-A 12329815-C-A **
3467594-G-A 3599553-G-A **
16834066-C-A 14722186-C-A **
16528134-C-A 14416254-C-A **
56843821-G-C **
14926461-T-A 12814526-T-A **
11033105-C-A **
11027081-C-A **
10950891-C-T **
56843830-T-C **
56843822-C-T **
56881157-A-AC **
10943740-T-C **
10745124-C-A **
56843807-G-A **
22429369-G-T 20267483-G-T DYZ19 **
59027317-AAAAC-A 56881170-AAAAC-A 4×AAAC**
14377079-A-C 12256375-A-C PF1637 CTS2591 M5136 **
4838026-CAG-C 4969985-CAG-C **
17545939-C-A 15434059-C-A **
13565696-C-A 11410020-C-A **
56843601-G-A **
7254007-GA-G 7385966-GA-G **
10651683-A-G **
14698503-C-A 12586569-C-A **
7134807-C-T 7266766-C-T **
19394059-CTTTT-C 17282179-CTTTT-C 37×T**
16278628-C-A 14166748-C-A **
28754952-C-A 26608805-C-A **
7448427-C-A 7580386-C-A IR1_L **
7248593-C-A 7380552-C-A **
11027069-C-T **
13466112-A-C 11310436-A-C **
13466095-C-T 11310419-C-T **
7239625-C-A 7371584-C-A **
18754768-C-A 16642888-C-A **
10808953-C-A **
7111620-C-A 7243579-C-A **
11647766-A-T **
22659591-C-A 20497705-C-A **
5645176-C-A 5777135-C-A **
23819030-C-A 21657144-C-A **
23056202-A-C 20894316-A-C **
13199164-CAAA-C 11043488-CAAA-C 18×A**
13235018-C-A 11079342-C-A **
13902826-C-A 11782120-C-A **
17549674-C-A 15437794-C-A **
11033770-C-A **
10667978-A-C **
18020749-C-A 15908869-C-A **
7039111-C-A 7171070-C-A **
14051993-C-A 11931287-C-A **
11667822-T-CC **
10763084-T-C **
11667817-TG-T **
10975782-A-C **
7200083-G-A 7332042-G-A FGC4339 **
10912670-C-T **
23145855-C-A 20983969-C-A **
15113650-C-A 13001737-C-A **
7418687-G-A 7550646-G-A **
10664740-C-A **
11667802-C-T **
11019696-C-A **
11665487-A-G **
14297994-A-T 12177288-A-T **
24406266-G-T 22260119-G-T **
17885672-C-A 15773792-C-A **
13705130-A-T 11549454-A-T **
13473818-G-C 11318142-G-C **
21216893-C-A 19055007-C-A **
18430095-A-AC 16318215-A-AC P6_Dst **
14339145-T-G 12218440-T-G **
10997141-A-C **
3804596-C-A 3936555-C-A **
13553096-C-A 11397420-C-A **
8056155-G-T 8188114-G-T **
10997123-TCC-T **
13855793-C-A 11735087-C-A **
3165740-G-T 3297699-G-T **
10760732-C-CCCCTT **
10997128-TCCA-T **
16620343-G-T 14508463-G-T **
10997146-A-G **
3196106-G-T 3328065-G-T **
3367087-A-G 3499046-A-G **
14176265-A-G 12055559-A-G **
10997154-C-T **
2814898-A-C 2946857-A-C **
22529732-A-G 20367846-A-G ***
2909500-A-G 3041459-A-G ***
56858324-GA-G ***
15951174-AT-A 13839294-AT-A 9×T***
16311760-G-GA 14199880-G-GA 8×A***
6935360-G-T 7067319-G-T ***
15123978-C-A 13012065-C-A ***
10673941-TGCACC-T,TGCACT ***
2798568-AT-A 2930527-AT-A ***
24475022-G-T 22328875-G-T ***
5867384-T-C 5999343-T-C ***
10950892-A-G ***
13477173-G-T 11321497-G-T ***
18162897-CTT-C 16051017-CTT-C 13×T***
14916890-CAAA-C,CAA 12804957-CAAA-C,CAA 15×A***
10677575-T-C ***
10775048-T-A ***
24911530-A-G 22765383-A-G g1 ***
24504550-T-C 22358403-T-C ***
7198828-C-A 7330787-C-A ***
23435682-CTTT-C,CTT 21273796-CTTT-C,CTT 21×T***
11004155-C-T ***
7583134-C-A 7715093-C-A ***
22037382-A-T 19875496-A-T ***
13857191-G-A 11736485-G-A ***
10746885-T-A,C ***
15380174-G-T 13268294-G-T ***
15176092-T-C 13064178-T-C ***
10783250-A-G ***
14836450-A-G 12724517-A-G ***
14734302-G-A 12622370-G-A ***
19345111-C-A 17233231-C-A ***
13850265-A-AGGAGT 11729559-A-AGGAGT 15×GGAAT***
9974276-AT-A 10136667-AT-A ***
13839809-TGGAAT-T,TAGAAA 11719103-TGGAAT-T,TAGAAA ***
13811128-G-A 11690422-G-A ***
17916792-C-A 15804912-C-A ***
4862536-C-A 4994495-C-A ***
10986388-TC-C,TT ***
15059443-C-A 12947535-C-A ***
2750896-C-A 2882855-C-A ***
10673912-C-G ***
16463851-C-A 14351971-C-A ***
5022164-C-A 5154123-C-A ***
13226604-C-A 11070928-C-A ***
6814456-G-T 6946415-G-T ***
23416012-CTT-C 21254126-CTT-C 12×T***
7227086-G-A 7359045-G-A ***
21466148-CT-C 19304262-CT-C ***
10956616-T-A,C ***
7375359-G-T 7507318-G-T ***
7649356-C-A 7781315-C-A ***
18837604-C-T 16725724-C-T ***
5112656-G-A 5244615-G-A ***
56749984-T-G ***
56749986-G-T ***
18190551-T-C 16078671-T-C ***
8538616-CA-C 8670575-CA-C ***
11012287-C-CTTGTG ***
10880377-C-A ***
9184095-C-A 9346486-C-A ***
7424041-C-A 7556000-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B278868931660375946097511193
Used in age calculations931660375946097511193
Counts of SNPs98
Variant counts last updated 2019-04-19 15:44:27.



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