MacLennan
FGC: TLW6C, FTDNA: 227811MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FGC TLW6C |
---|---|---|---|---|---|---|---|---|
3231578-A-G | 3363537-A-G | FGC29780 | + | |||||
4788621-C-A | 4920580-C-A | FGC29781 | + | |||||
4883605-T-C | 5015564-T-C | FGC29782 | + | |||||
7711197-G-A | 7843156-G-A | FGC29783 | FGC29783 | Y | + | |||
7888717-G-A | 8020676-G-A | FGC29784 | FGC29784 | Y | Y | + | ||
8525332-C-A | 8657291-C-A | FGC29784 | FGC29785 | Y | Y | + | ||
15273298-C-A | 13161387-C-A | FGC29784 | FGC29786 | Y | Y | + | ||
16924423-G-A | 14812543-G-A | FGC29784 | FGC29787 | Y | Y | + | ||
18177659-A-G | 16065779-A-G | FGC29783 | FGC29788 | Y | Y | + | ||
18997844-C-T | 16885964-C-T | FGC29784 | FGC29789 | Y | Y | + | ||
24403714-A-G | 22257567-A-G | FGC29783 | FGC29790 | + | ||||
14720664-TA-T | 12608732-TA-T | FGC29784 | FGC29792 | + | ||||
27265007-T-C | 25118860-T-C | FGC29791 | P1_g3 | * | ||||
13659320-T-C | 11503644-T-C | ** | ||||||
13420035-C-A | 11264359-C-A | ** | ||||||
22491404-C-A | 20329518-C-A | DYZ19 | ** | |||||
13487638-T-G | 11331962-T-G | ** | ||||||
13407167-C-G | 11251491-C-G | ** | ||||||
22459177-T-A | 20297291-T-A | BY38867 | DYZ19 | ** | ||||
13616457-G-T | 11460781-G-T | ** | ||||||
13387250-A-G | 11231574-A-G | ** | ||||||
6918475-G-A | 7050434-G-A | ** | ||||||
10013443-C-T | 10175834-C-T | FGC79027 | ** | |||||
13203957-T-C | 11048281-T-C | ** | ||||||
13529382-G-A | 11373706-G-A | ** | ||||||
22332761-A-C | 20170875-A-C | DYZ19 | ** | |||||
22332762-G-T | 20170876-G-T | DYZ19 | ** | |||||
22332781-G-C | 20170895-G-C | DYZ19 | ** | |||||
22332810-T-G | 20170924-T-G | DYZ19 | ** | |||||
13561233-A-AT | 11405557-A-AT | ** | ||||||
7270276-C-CTTTTT | 7402235-C-CTTTTT | 25×T | ** | |||||
13222013-GGGAAAGAA-G | 11066337-GGGAAAGAA-G | ** | ||||||
20326007-C-CTTTTTTTTTTT | 18164121-C-CTTTTTTTTTTT | P5_Dst | 29×T | ** | ||||
26463097-C-CTTTTTT | 24316950-C-CTTTTTT | P1_Y1 | 36×T | ** | ||||
22295848-C-G | 20133962-C-G | DYZ19 | *** | |||||
14991027-C-G | 12879112-C-G | CTS3525 | *** | |||||
28818242-A-G | 26672095-A-G | *** | ||||||
28818250-C-T | 26672103-C-T | *** | ||||||
13467063-G-T | 11311387-G-T | *** | ||||||
13129673-T-C | 10619159-T-C | *** | ||||||
13129675-A-T | 10619161-A-T | *** | ||||||
13129710-T-C | 10619196-T-C | *** | ||||||
22358856-G-A | 20196970-G-A | DYZ19 | *** | |||||
13203965-GA-G | 11048289-GA-G | *** | ||||||
13203955-CATCATT-GACAATA | 11048279-CATCATT-GACAATA | *** | ||||||
58981976-TTTCCAC-T | 56835829-TTTCCAC-T | *** | ||||||
22352949-C-A | 20191063-C-A | DYZ19 | *** | |||||
16340147-G-AA | 14228267-G-AA | 22×A | *** | |||||
22309415-A-C | 20147529-A-C | DYZ19 | *** | |||||
15171226-CTTTTTTT-C | 13059312-CTTTTTTT-C | 19×T | *** | |||||
13476008-G-A | 11320332-G-A | *** | ||||||
10029616-G-T | 10192007-G-T | *** | ||||||
22309239-C-T | 20147353-C-T | DYZ19 | *** | |||||
22365692-A-C | 20203806-A-C | DYZ19 | *** | |||||
22366768-C-T | 20204882-C-T | DYZ19 | *** | |||||
22366791-C-T | 20204905-C-T | DYZ19 | *** | |||||
22367193-C-T | 20205307-C-T | DYZ19 | *** | |||||
22367204-A-G | 20205318-A-G | DYZ19 | *** | |||||
22367227-T-G | 20205341-T-G | DYZ19 | *** | |||||
22367253-C-G | 20205367-C-G | DYZ19 | *** | |||||
58874495-C-A | 56716376-G-T | *** | ||||||
22480958-G-C | 20319072-G-C | DYZ19 | *** | |||||
22342970-T-G | 20181084-T-G | DYZ19 | *** | |||||
26370576-C-G | 24224429-C-G | P1_Y1 | *** | |||||
26370578-T-G | 24224431-T-G | P1_Y1 | *** | |||||
26370572-G-GAA | 24224425-G-GAA | P1_Y1 | *** | |||||
22342343-G-C | 20180457-G-C | DYZ19 | *** | |||||
22309320-T-A | 20147434-T-A | DYZ19 | *** | |||||
22365861-A-G | 20203975-A-G | DYZ19 | *** | |||||
17239290-T-TTATA | 15127410-T-TTATA | 17×TA | *** | |||||
9980884-GA-G | 10143275-GA-G | *** | ||||||
13203970-CCACCCCGCCTC-TAAT | 11048294-CCACCCCGCCTC-TAAT | *** | ||||||
58821131-GATTCTCT-CATTTTC | 56769733-AGAGAATC-GAAAATG | *** | ||||||
13616570-A-C | 11460894-A-C | *** | ||||||
58877158-G-T | 56713713-C-A | *** | ||||||
9952770-TG-CA | 10115161-TG-CA | *** | ||||||
13470168-AG-CC | 11314492-AG-CC | *** | ||||||
10090635-G-C | 10253026-G-C | *** | ||||||
22364523-T-A | 20202637-T-A | DYZ19 | *** | |||||
22366002-ACCAGAGG-TCCAGAGT | 20204116-ACCAGAGG-TCCAGAGT | DYZ19 | *** | |||||
22342748-A-C | 20180862-A-C | DYZ19 | *** | |||||
23901429-N-C | 21739543-N-C | *** | ||||||
22420848-A-G | 20258962-A-G | DYZ19 | *** | |||||
22420891-G-C | 20259005-G-C | DYZ19 | *** | |||||
22495918-G-A | 20334032-G-A | DYZ19 | *** | |||||
22502940-A-T | 20341054-A-T | DYZ19 | *** | |||||
22367107-C-A | 20205221-C-A | DYZ19 | *** | |||||
9952737-TT-GC | 10115128-TT-GC | *** | ||||||
13435360-ATA-GTC | 11279684-ATA-GTC | *** | ||||||
22367118-GA-AG | 20205232-GA-AG | DYZ19 | *** | |||||
22236364-T-C | 20074478-T-C | DYZ19 | *** | |||||
22366765-T-C | 20204879-T-C | DYZ19 | *** | |||||
22365977-GGTGG-TGTTA | 20204091-GGTGG-TGTTA | DYZ19 | *** | |||||
58903222-G-C | 56687649-C-G | *** | ||||||
13470158-AGG-GCC | 11314482-AGG-GCC | *** | ||||||
22309354-TAGAA-CAGAG | 20147468-TAGAA-CAGAG | DYZ19 | *** | |||||
24408991-ACCC-A | 22262844-ACCC-A | 14×C | *** | |||||
28819269-GGTA-TGGG | 26673122-GGTA-TGGG | *** | ||||||
22352931-A-T | 20191045-A-T | DYZ19 | *** | |||||
8972442-C-A | 9134833-C-A | *** | ||||||
22367126-G-C | 20205240-G-C | DYZ19 | *** | |||||
26508346-C-T | 24362199-C-T | P1_Y1 | *** | |||||
7481350-G-GT | 7613309-G-GT | IR1_L | 12×T | *** | ||||
22337705-A-C | 20175819-A-C | DYZ19 | *** | |||||
58844956-G-C | 56745915-C-G | *** | ||||||
21853677-C-CAAAAAA | 19691791-C-CAAAAAA | 43×A | *** | |||||
22245736-AG-A | 20083850-AG-A | DYZ19 | *** | |||||
22223603-A-C | 20061717-A-C | DYZ19 | *** | |||||
58844950-G-C | 56745921-C-G | *** | ||||||
58844970-T-C | 56745901-A-G | *** | ||||||
9939366-C-A | 10101757-C-A | *** | ||||||
7026596-C-G | 7158555-C-G | *** | ||||||
58908603-C-T | 56682268-G-A | *** | ||||||
13487111-C-GCCT | 11331435-C-GCCT | *** | ||||||
58877059-AGCGGA-C | 56713807-TCCGCT-G | *** | ||||||
58847217-G-T | 56743654-C-A | *** | ||||||
22421614-T-C | 20259728-T-C | DYZ19 | *** | |||||
22421634-A-T | 20259748-A-T | DYZ19 | *** | |||||
28405637-T-A | 26259490-T-A | P1_gr2 | *** | |||||
58830812-G-T | 56760059-C-A | *** | ||||||
58830841-G-T | 56760030-C-A | *** | ||||||
58874466-G-T | 56716405-C-A | *** | ||||||
58903546-T-C | 56687325-A-G | *** | ||||||
58904194-C-T | 56686677-G-A | *** | ||||||
58904203-G-A | 56686668-C-T | *** | ||||||
22292745-GT-CA | 20130859-GT-CA | DYZ19 | *** | |||||
10084308-TA-T | 10246699-TA-T | *** | ||||||
13864542-TATGTCATT-AATG | 11743836-TATGTCATT-AATG | *** | ||||||
22235087-A-AC | 20073201-A-AC | DYZ19 | *** | |||||
28784306-GGAAAA-G | 26638159-GGAAAA-G | *** | ||||||
58908589-TCAC-CCAT | 56682279-GTGA-ATGG | *** | ||||||
9956232-A-G | 10118623-A-G | *** | ||||||
9956228-G-A | 10118619-G-A | FT262758 | *** | |||||
9956214-T-C | 10118605-T-C | *** | ||||||
7573168-G-A | 7705127-G-A | *** | ||||||
7201588-T-C | 7333547-T-C | *** | ||||||
13472933-A-T | 11317257-A-T | *** | ||||||
13467068-T-A | 11311392-T-A | *** | ||||||
13472906-A-C | 11317230-A-C | F18178 | *** | |||||
13467057-T-G | 11311381-T-G | *** | ||||||
10104557-N-G | 10266948-N-G | *** | ||||||
13512468-T-A | 11356792-T-A | *** | ||||||
58912183-G-C | 56678688-C-G | *** | ||||||
10104560-N-C | 10266951-N-C | *** | ||||||
10104562-N-G | 10266953-N-G | *** | ||||||
10104559-N-T | 10266950-N-T | *** | ||||||
13932167-A-T | 11811461-A-T | FT311449 | 11×AT | *** | ||||
22267284-C-G | 20105398-C-G | DYZ19 | *** | |||||
13932166-T-A | 11811460-T-A | *** | ||||||
9781439-T-A | 9943830-T-A | *** | ||||||
22343623-C-A | 20181737-C-A | DYZ19 | *** | |||||
22343455-G-C | 20181569-G-C | DYZ19 | *** | |||||
3512063-G-C | 3644022-G-C | *** | ||||||
13467726-A-G | 11312050-A-G | *** | ||||||
22223563-C-A | 20061677-C-A | DYZ19 | *** | |||||
3930597-A-G | 4062556-A-G | *** | ||||||
4044971-A-T | 4176930-A-T | FGC81652 | *** | |||||
4909906-A-G | 5041865-A-G | *** | ||||||
4910905-G-T | 5042864-G-T | *** | ||||||
6300157-G-T | 6432116-G-T | IR3_Dst | *** | |||||
6300158-C-T | 6432117-C-T | IR3_Dst | *** | |||||
6300159-A-G | 6432118-A-G | IR3_Dst | *** | |||||
9559492-T-G | 9721883-T-G | IR3_Prx | 17×TG | *** | ||||
9559510-G-A | 9721901-G-A | IR3_Prx | *** | |||||
9559520-G-A | 9721911-G-A | IR3_Prx | *** | |||||
9570176-G-A | 9732567-G-A | IR3_Prx | *** | |||||
9625114-T-A | 9787505-T-A | IR3_Prx | *** | |||||
9687636-C-T | 9850027-C-T | IR3_Prx | *** | |||||
9891067-T-C | 10053458-T-C | *** | ||||||
10084383-A-T | 10246774-A-T | *** | ||||||
10090758-G-T | 10253149-G-T | *** | ||||||
10092414-T-A | 10254805-T-A | *** | ||||||
10104558-N-A | 10266949-N-A | *** | ||||||
13407200-G-A | 11251524-G-A | *** | ||||||
13419968-T-A | 11264292-T-A | *** | ||||||
13463597-G-A | 11307921-G-A | *** | ||||||
13472916-T-A | 11317240-T-A | *** | ||||||
13485345-G-C | 11329669-G-C | *** | ||||||
13487885-C-T | 11332209-C-T | *** | ||||||
13701985-A-C | 11546309-A-C | *** | ||||||
13728333-A-T | 11572657-A-T | *** | ||||||
15296073-T-C | 13184172-T-C | *** | ||||||
16140962-C-T | 14029082-C-T | P8_Dst | *** | |||||
16996806-T-C | 14884926-T-C | *** | ||||||
18330808-G-A | 16218928-G-A | P6_Prx | *** | |||||
18363390-T-C | 16251510-T-C | P6_Prx | *** | |||||
18363398-T-C | 16251518-T-C | P6_Prx | *** | |||||
18363399-C-T | 16251519-C-T | P6_Prx | *** | |||||
18463312-C-T | 16351432-C-T | P6_Dst | *** | |||||
19600272-C-T | 17488392-C-T | P5_Prx | *** | |||||
19646378-C-G | 17534498-C-G | P5_Prx | *** | |||||
19662172-T-A | 17550292-T-A | P5_Prx | *** | |||||
19662177-A-G | 17550297-A-G | P5_Prx | *** | |||||
19663063-T-G | 17551183-T-G | P5_Prx | *** | |||||
19769640-A-C | 17657760-A-C | P5_Prx | *** | |||||
19769643-C-T | 17657763-C-T | P5_Prx | *** | |||||
19769645-A-C | 17657765-A-C | P5_Prx | *** | |||||
19774427-A-T | 17662547-A-T | P5_Prx | *** | |||||
19803210-A-T | 17691330-A-T | P5_Prx | *** | |||||
19803235-C-T | 17691355-C-T | P5_Prx | *** | |||||
19803237-A-G | 17691357-A-G | P5_Prx | *** | |||||
20009310-T-A | 17897430-T-A | P5_Prx | *** | |||||
20104706-A-G | 17992826-A-G | P5_Dst | *** | |||||
20125108-T-C | 18013228-T-C | P5_Dst | *** | |||||
20133236-A-G | 18021356-A-G | P5_Dst | *** | |||||
20133238-A-C | 18021358-A-C | P5_Dst | *** | |||||
20255677-C-A | 18093791-C-A | P5_Dst | *** | |||||
20420253-C-G | 18258367-C-G | P5_Dst | *** | |||||
20420257-A-G | 18258371-A-G | P5_Dst | *** | |||||
20420270-A-T | 18258384-A-T | P5_Dst | *** | |||||
20580377-A-T | 18418491-A-T | P5_Dst | *** | |||||
20580382-C-G | 18418496-C-G | P5_Dst | *** | |||||
20609877-T-C | 18447991-T-C | P5_Dst | *** | |||||
20688364-A-T | 18526478-A-T | P4_Prx | *** | |||||
20693261-C-T | 18531375-C-T | P4_Prx | *** | |||||
21004289-G-A | 18842403-G-A | P4_Dst | *** | |||||
21208751-C-A | 19046865-C-A | *** | ||||||
21829989-G-A | 19668103-G-A | *** | ||||||
22223545-C-A | 20061659-C-A | DYZ19 | *** | |||||
22224146-A-T | 20062260-A-T | DYZ19 | *** | |||||
22231955-G-C | 20070069-G-C | DYZ19 | *** | |||||
22231959-A-G | 20070073-A-G | DYZ19 | *** | |||||
22231961-A-G | 20070075-A-G | DYZ19 | *** | |||||
22231973-A-T | 20070087-A-T | DYZ19 | *** | |||||
22234726-T-C | 20072840-T-C | DYZ19 | *** | |||||
22245071-G-A | 20083185-G-A | DYZ19 | *** | |||||
22267273-A-G | 20105387-A-G | DYZ19 | *** | |||||
22268266-C-G | 20106380-C-G | DYZ19 | *** | |||||
22309681-A-G | 20147795-A-G | DYZ19 | *** | |||||
22309762-T-C | 20147876-T-C | DYZ19 | *** | |||||
22309791-T-C | 20147905-T-C | DYZ19 | *** | |||||
22324815-G-A | 20162929-G-A | DYZ19 | *** | |||||
22332536-T-G | 20170650-T-G | DYZ19 | *** | |||||
22332799-A-C | 20170913-A-C | DYZ19 | *** | |||||
22332815-T-C | 20170929-T-C | DYZ19 | *** | |||||
22332819-G-A | 20170933-G-A | DYZ19 | *** | |||||
22332822-T-A | 20170936-T-A | DYZ19 | *** | |||||
22332823-T-G | 20170937-T-G | DYZ19 | *** | |||||
22332826-T-A | 20170940-T-A | DYZ19 | *** | |||||
22332827-T-G | 20170941-T-G | DYZ19 | *** | |||||
22332835-A-C | 20170949-A-C | DYZ19 | *** | |||||
22332836-T-A | 20170950-T-A | DYZ19 | *** | |||||
22332849-T-A | 20170963-T-A | DYZ19 | *** | |||||
22337554-G-A | 20175668-G-A | DYZ19 | *** | |||||
22342783-A-C | 20180897-A-C | DYZ19 | *** | |||||
22342847-C-T | 20180961-C-T | DYZ19 | *** | |||||
22343312-A-T | 20181426-A-T | DYZ19 | *** | |||||
22343313-G-A | 20181427-G-A | DYZ19 | *** | |||||
22343314-T-C | 20181428-T-C | DYZ19 | *** | |||||
22343603-T-G | 20181717-T-G | FGC80736 | DYZ19 | *** | ||||
22344488-A-T | 20182602-A-T | DYZ19 | *** | |||||
22364450-A-T | 20202564-A-T | DYZ19 | *** | |||||
22366488-T-A | 20204602-T-A | DYZ19 | *** | |||||
22367074-T-G | 20205188-T-G | DYZ19 | *** | |||||
22367929-C-G | 20206043-C-G | DYZ19 | *** | |||||
22367956-G-T | 20206070-G-T | DYZ19 | *** | |||||
22421604-T-A | 20259718-T-A | DYZ19 | *** | |||||
22456919-C-T | 20295033-C-T | DYZ19 | *** | |||||
22456947-C-G | 20295061-C-G | DYZ19 | *** | |||||
22495902-A-G | 20334016-A-G | DYZ19 | *** | |||||
22499018-C-G | 20337132-C-G | DYZ19 | *** | |||||
22503789-T-C | 20341903-T-C | DYZ19 | *** | |||||
22504362-G-T | 20342476-G-T | DYZ19 | *** | |||||
22637374-C-A | 20475488-C-A | *** | ||||||
24539522-C-T | 22393375-C-T | P3_t2 | *** | |||||
25207822-C-A | 23061675-C-A | P2_r1 | 51×A | *** | ||||
25207932-G-T | 23061785-G-T | P2_r1 | *** | |||||
25519801-T-C | 23373654-T-C | P1_gr1 | *** | |||||
25519816-T-C | 23373669-T-C | P1_gr1 | *** | |||||
25519825-C-A | 23373678-C-A | P1_gr1 | *** | |||||
25553079-G-T | 23406932-G-T | P1_gr1 | *** | |||||
25870933-G-A | 23724786-G-A | P1_Y1 | *** | |||||
25870936-G-C | 23724789-G-C | P1_Y1 | *** | |||||
25923656-T-G | 23777509-T-G | P1_Y1 | *** | |||||
25958124-A-T | 23811977-A-T | P1_Y1 | *** | |||||
25958128-A-G | 23811981-A-G | P1_Y1 | *** | |||||
26067818-C-T | 23921671-C-T | P1_Y1 | *** | |||||
26070002-G-C | 23923855-G-C | P1_Y1 | *** | |||||
26143716-T-C | 23997569-T-C | P1_Y1 | *** | |||||
26216109-T-G | 24069962-T-G | P1_Y1 | *** | |||||
26216113-T-G | 24069966-T-G | P1_Y1 | *** | |||||
26257713-G-A | 24111566-G-A | P1_Y1 | *** | |||||
26257716-A-C | 24111569-A-C | P1_Y1 | *** | |||||
26370558-T-C | 24224411-T-C | P1_Y1 | *** | |||||
26370559-G-A | 24224412-G-A | P1_Y1 | *** | |||||
26370560-T-C | 24224413-T-C | P1_Y1 | *** | |||||
27134162-A-G | 24988015-A-G | P1_g3 | *** | |||||
27265659-A-T | 25119512-A-T | P1_g3 | *** | |||||
27407169-T-G | 25261022-T-G | P1_g3 | *** | |||||
27407202-A-T | 25261055-A-T | P1_g3 | *** | |||||
27407207-T-G | 25261060-T-G | P1_g3 | *** | |||||
27407235-A-G | 25261088-A-G | P1_g3 | *** | |||||
27487300-G-T | 25341153-G-T | P1_Y2 | *** | |||||
27487308-A-G | 25341161-A-G | P1_Y2 | *** | |||||
27487313-G-T | 25341166-G-T | P1_Y2 | *** | |||||
27851044-G-A | 25704897-G-A | P1_Y2 | *** | |||||
27851093-G-A | 25704946-G-A | P1_Y2 | *** | |||||
27870440-T-C | 25724293-T-C | P1_Y2 | *** | |||||
27870447-T-G | 25724300-T-G | P1_Y2 | *** | |||||
27870448-C-T | 25724301-C-T | P1_Y2 | *** | |||||
27870482-T-G | 25724335-T-G | P1_Y2 | *** | |||||
27922957-A-T | 25776810-A-T | P1_Y2 | *** | |||||
27923099-T-C | 25776952-T-C | P1_Y2 | *** | |||||
27923100-G-A | 25776953-G-A | P1_Y2 | *** | |||||
27923101-A-G | 25776954-A-G | P1_Y2 | *** | |||||
27923102-C-T | 25776955-C-T | P1_Y2 | *** | |||||
28039170-C-A | 25893023-C-A | P1_Y2 | *** | |||||
28107457-T-C | 25961310-T-C | P1_Y2 | *** | |||||
28107484-G-A | 25961337-G-A | P1_Y2 | *** | |||||
28107486-T-C | 25961339-T-C | P1_Y2 | *** | |||||
28108404-G-A | 25962257-G-A | P1_Y2 | *** | |||||
28491120-A-C | 26344973-A-C | *** | ||||||
28802768-C-G | 26656621-C-G | *** | ||||||
28818189-G-C | 26672042-G-C | *** | ||||||
58823275-C-T | 56767596-G-A | *** | ||||||
58824546-G-T | 56766325-C-A | *** | ||||||
58824561-T-G | 56766310-A-C | *** | ||||||
58828968-T-C | 56761903-A-G | *** | ||||||
58828971-C-T | 56761900-G-A | *** | ||||||
58830836-T-A | 56760035-A-T | *** | ||||||
58832664-G-A | 56758207-C-T | *** | ||||||
58832674-C-A | 56758197-G-T | *** | ||||||
58840087-T-A | 56750784-A-T | *** | ||||||
58840097-G-A | 56750774-C-T | *** | ||||||
58840100-T-C | 56750771-A-G | *** | ||||||
58840105-A-C | 56750766-T-G | *** | ||||||
58840131-A-C | 56750740-T-G | *** | ||||||
58840155-T-C | 56750716-A-G | *** | ||||||
58840161-A-C | 56750710-T-G | *** | ||||||
58840170-T-C | 56750701-A-G | *** | ||||||
58840212-T-A | 56750659-A-T | *** | ||||||
58844904-G-T | 56745967-C-A | *** | ||||||
58845214-A-C | 56745657-T-G | *** | ||||||
58847200-G-C | 56743671-C-G | *** | ||||||
58847269-G-C | 56743602-C-G | *** | ||||||
58848437-C-T | 56742434-G-A | *** | ||||||
58848444-A-C | 56742427-T-G | *** | ||||||
58848445-T-C | 56742426-A-G | *** | ||||||
58848462-C-T | 56742409-G-A | *** | ||||||
58855652-G-C | 56735219-C-G | *** | ||||||
58861657-T-A | 56729214-A-T | *** | ||||||
58864018-A-T | 56726853-T-A | *** | ||||||
58876126-T-A | 56714745-A-T | *** | ||||||
58876136-G-A | 56714735-C-T | *** | ||||||
58876160-G-C | 56714711-C-G | *** | ||||||
58877159-A-C | 56713712-T-G | *** | ||||||
58879788-C-T | 56711083-G-A | *** | ||||||
58880932-T-C | 56709939-A-G | *** | ||||||
58880934-G-A | 56709937-C-T | *** | ||||||
58882188-T-C | 56708683-A-G | *** | ||||||
58886141-C-T | 56704730-G-A | *** | ||||||
58886147-C-T | 56704724-G-A | *** | ||||||
58890017-C-A | 56700854-G-T | *** | ||||||
58891824-A-C | 56699047-T-G | *** | ||||||
58904182-A-C | 56686689-T-G | *** | ||||||
58904192-G-C | 56686679-C-G | *** | ||||||
58908501-C-A | 56682370-G-T | *** | ||||||
58908512-A-T | 56682359-T-A | *** | ||||||
13140153-CTCCAT-C | 10629639-CTCCAT-C | 12×TCCAT | *** | |||||
22244926-GA-G | 20083040-GA-G | DYZ19 | *** | |||||
13287973-ATA-CTC | 11132297-ATA-CTC | *** | ||||||
2793170-ATT-A | 2925129-ATT-A | *** | ||||||
2810366-A-ATTTTTTT | 2942325-A-ATTTTTTT | 23×T | *** | |||||
3205858-C-CAAAAAA | 3337817-C-CAAAAAA | 15×A | *** | |||||
3878644-C-CAAA | 4010603-C-CAAA | 15×A | *** | |||||
3878659-A-AAAG | 4010618-A-AAAG | *** | ||||||
3930579-ATATA-GTGTG | 4062538-ATATA-GTGTG | *** | ||||||
6089764-G-GTTTTTTTTTTT | 6221723-G-GTTTTTTTTTTT | 31×T | *** | |||||
7201570-TCCCTTCCA-CCCCCTCCC | 7333529-TCCCTTCCA-CCCCCTCCC | *** | ||||||
8160178-C-CAAAAAAAAAAAAA | 8292137-C-CAAAAAAAAAAAAA | 20×A | *** | |||||
8184338-AATGTTATAAACACTCTG-A | 8316297-AATGTTATAAACACTCTG-A | *** | ||||||
10084390-G-GA | 10246781-G-GA | *** | ||||||
10084395-A-AT | 10246786-A-AT | *** | ||||||
13405153-TT-A | 11249477-TT-A | *** | ||||||
13448633-GCATTCCATTCCATTCC-G | 11292957-GCATTCCATTCCATTCC-G | 13×CATTC | *** | |||||
13454832-TATTCC-T | 11299156-TATTCC-T | *** | ||||||
13456019-GATTCCATTCCATTCCATTCC-G | 11300343-GATTCCATTCCATTCCATTCC-G | 11×ATTCC | *** | |||||
13467771-CA-C | 11312095-CA-C | *** | ||||||
13472916-TAG-AAC | 11317240-TAG-AAC | *** | ||||||
13472930-CTGA-TTGT | 11317254-CTGA-TTGT | *** | ||||||
13484458-TAAT-CAAA | 11328782-TAAT-CAAA | *** | ||||||
13487635-TGCT-CGCG | 11331959-TGCT-CGCG | *** | ||||||
13488959-GCCCA-TCACC | 11333283-GCCCA-TCACC | *** | ||||||
13531753-C-CACGAAA | 11376077-C-CACGAAA | 23×A | *** | |||||
13535664-TAT-CAC | 11379988-TAT-CAC | *** | ||||||
13545271-CAAAGAAT-AAAA | 11389595-CAAAGAAT-AAAA | *** | ||||||
13864559-T-TGGAAC | 11743853-T-TGGAAC | *** | ||||||
13932166-TA-AT | 11811460-TA-AT | *** | ||||||
16031378-A-ATC | 13919498-A-ATC | *** | ||||||
16140961-CC-TT | 14029081-CC-TT | P8_Dst | *** | |||||
19569882-CA-T | 17458002-CA-T | P5_Prx | *** | |||||
19600260-CTA-TTG | 17488380-CTA-TTG | P5_Prx | *** | |||||
19600283-T-TA | 17488403-T-TA | P5_Prx | *** | |||||
19774419-TTC-CTG | 17662539-TTC-CTG | P5_Prx | *** | |||||
20009300-CTC-AAT | 17897420-CTC-AAT | P5_Prx | *** | |||||
20342601-TG-AT | 18180715-TG-AT | P5_Dst | *** | |||||
20347260-AGT-TGC | 18185374-AGT-TGC | P5_Dst | *** | |||||
20347283-GGAGT-TGAGC | 18185397-GGAGT-TGAGC | P5_Dst | *** | |||||
20420253-CAGAA-GAGAG | 18258367-CAGAA-GAGAG | P5_Dst | *** | |||||
20569614-C-CAAAAAAAAAA | 18407728-C-CAAAAAAAAAA | P5_Dst | 33×A | *** | ||||
20688300-AAGCAA-CAGGAT | 18526414-AAGCAA-CAGGAT | P4_Prx | *** | |||||
20688332-CATTTAATCAGC-TATACAAGTAGA | 18526446-CATTTAATCAGC-TATACAAGTAGA | P4_Prx | *** | |||||
20688349-AAC-A | 18526463-AAC-A | P4_Prx | *** | |||||
20688355-CAT-AATG | 18526469-CAT-AATG | P4_Prx | *** | |||||
20688369-GGCGTCACTTG-AACATCATTAA | 18526483-GGCGTCACTTG-AACATCATTAA | P4_Prx | *** | |||||
21148589-C-CAAAAA | 18986703-C-CAAAAA | 30×A | *** | |||||
21411718-CA-C | 19249832-CA-C | 31×A | *** | |||||
22231933-GT-CC | 20070047-GT-CC | DYZ19 | *** | |||||
22231970-CCTA-GCTT | 20070084-CCTA-GCTT | DYZ19 | *** | |||||
22235008-TG-CA | 20073122-TG-CA | DYZ19 | *** | |||||
22267248-CA-TG | 20105362-CA-TG | DYZ19 | *** | |||||
22309955-TT-AG | 20148069-TT-AG | DYZ19 | *** | |||||
22330200-T-TC | 20168314-T-TC | DYZ19 | *** | |||||
22332761-AG-CT | 20170875-AG-CT | DYZ19 | *** | |||||
22332799-A-TC | 20170913-A-TC | DYZ19 | *** | |||||
22332803-AC-A | 20170917-AC-A | DYZ19 | *** | |||||
22332810-TTACGTCCAGAGTTTGTTCCTTT-GTGCGGACCCAAAGAGTGAGC | 20170924-TTACGTCCAGAGTTTGTTCCTTT-GTGCGGACCCAAAGAGTGAGC | DYZ19 | *** | |||||
22332835-ATGTGTCCAGAG-CAGCAAGAT | 20170949-ATGTGTCCAGAG-CAGCAAGAT | DYZ19 | *** | |||||
22352926-C-CAAGA | 20191040-C-CAAGA | DYZ19 | *** | |||||
22421061-CA-C | 20259175-CA-C | DYZ19 | *** | |||||
22421424-TAGGTGCC-AAGCTGCA | 20259538-TAGGTGCC-AAGCTGCA | DYZ19 | *** | |||||
22421679-CCAGT-GCAGA | 20259793-CCAGT-GCAGA | DYZ19 | *** | |||||
22450600-GG-AA | 20288714-GG-AA | DYZ19 | *** | |||||
22480975-TCAGT-ACACA | 20319089-TCAGT-ACACA | DYZ19 | *** | |||||
22495725-AGTTGTG-A | 20333839-AGTTGTG-A | DYZ19 | *** | |||||
22495925-AGTGAGTGT-GGTGTGTGA | 20334039-AGTGAGTGT-GGTGTGTGA | DYZ19 | *** | |||||
22499006-TTTCG-GTTCA | 20337120-TTTCG-GTTCA | DYZ19 | *** | |||||
24264513-CTTTTTT-C | 22118366-CTTTTTT-C | P3_b1 | 18×T | *** | ||||
24566495-G-GA | 22420348-G-GA | P3_t2 | *** | |||||
24686428-C-CTTTTTTTG | 22540281-C-CTTTTTTTG | P3_b2 | 23×T | *** | ||||
26060168-C-CAAAAAAAAA | 23914021-C-CAAAAAAAAA | P1_Y1 | 39×A | *** | ||||
26207943-CG-AC | 24061796-CG-AC | P1_Y1 | *** | |||||
26207960-ACCCATCT-A | 24061813-ACCCATCT-A | P1_Y1 | *** | |||||
27134156-AAG-A | 24988009-AAG-A | P1_g3 | *** | |||||
27407148-GAACG-AAACT | 25261001-GAACG-AAACT | P1_g3 | *** | |||||
27520670-TGGATCC-GTGTGCT | 25374523-TGGATCC-GTGTGCT | P1_Y2 | *** | |||||
27520710-ATGTTCAAGG-A | 25374563-ATGTTCAAGG-A | P1_Y2 | *** | |||||
27862547-A-AGAGC | 25716400-A-AGAGC | P1_Y2 | *** | |||||
27938167-TTTTA-CTAG | 25792020-TTTTA-CTAG | P1_Y2 | *** | |||||
28107511-CT-C | 25961364-CT-C | P1_Y2 | *** | |||||
58830823-ACATTC-CGATTT | 56760043-GAATGT-AAATCG | *** | ||||||
58843676-GTTT-ATTC | 56747192-AAAC-GAAT | *** | ||||||
58843778-ACGATTCC-TGGAGTCA | 56747086-GGAATCGT-TGACTCCA | *** | ||||||
58844971-GATG-CATT | 56745897-CATC-AATG | *** | ||||||
58870549-TTG-T | 56720318-GAC-G | *** | ||||||
58877133-GT-TC | 56713737-AC-GA | *** | ||||||
59007959-C-CAAAAAAAA | 56861812-C-CAAAAAAAA | 26×A | *** | |||||
59013640-TTTTTTTT-AAATATATATATA | 56867493-TTTTTTTT-AAATATATATATA | *** | ||||||
14919271-C-CTTT | 12807338-C-CTTTTT | 45×T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.