MacLennan

FGC: TLW6C, FTDNA: 227811
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z46375 > DF106 > DF104 > DF105 > FGC4108/S588 > S7814 > F1265 > FGC29784 > FGC29783

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
TLW6C
14720664-TA-T 12608732-TA-T FGC29784FGC29792 +
3231578-A-G 3363537-A-G FGC29780 +
7888717-G-A 8020676-G-A FGC29784FGC29784 YY+
8525332-C-A 8657291-C-A FGC29784FGC29785 YY+
4883605-T-C 5015564-T-C FGC29782 +
24403714-A-G 22257567-A-G FGC29783FGC29790 +
4788621-C-A 4920580-C-A FGC29781 +
7711197-G-A 7843156-G-A FGC29783FGC29783 Y+
18177659-A-G 16065779-A-G FGC29783FGC29788 YY+
15273298-C-A 13161387-C-A FGC29784FGC29786 YY+
18997844-C-T 16885964-C-T FGC29784FGC29789 YY+
16924423-G-A 14812543-G-A FGC29784FGC29787 YY+
27265007-T-C 25118860-T-C FGC29791 P1_g3 *
7270276-C-CTTTTT 7402235-C-CTTTTT 25×T**
13561233-A-AT 11405557-A-AT **
10013443-C-T 10175834-C-T FGC79027 **
13203957-T-C 11048281-T-C **
15226770-C-T 13114856-C-T A4679FGC7579 YP4440 **
20326007-C-CTTTTTTTTTTT 18164121-C-CTTTTTTTTTTT P5_Dst 29×T**
13487638-T-G 11331962-T-G **
22459177-T-A 20297291-T-A BY38867 DYZ19 **
13487672-A-AAAACGCGCCGCCC 11331996-A-AAAACGCGCCGCCC **
13407167-C-G 11251491-C-G **
21118158-T-TAC 18956272-T-TAC FGC5438 22×AC**
13222013-GGGAAAGAA-G 11066337-GGGAAAGAA-G **
13529382-G-A 11373706-G-A **
13616457-G-T 11460781-G-T **
22332762-G-T 20170876-G-T DYZ19 **
13387250-A-G 11231574-A-G **
13420035-C-A 11264359-C-A **
6918475-G-A 7050434-G-A **
22332761-A-C 20170875-A-C DYZ19 **
26463097-C-CTTTTTT 24316950-C-CTTTTTT P1_Y1 36×T**
22332810-T-G 20170924-T-G DYZ19 **
13436864-A-G 11281188-A-G **
22491404-C-A 20329518-C-A DYZ19 **
13659320-T-C 11503644-T-C **
22332781-G-C 20170895-G-C DYZ19 **
28039170-C-A 25893023-C-A P1_Y2 ***
27923102-C-T 25776955-C-T P1_Y2 ***
58847200-G-C 56743671-C-G ***
28107457-T-C 25961310-T-C P1_Y2 ***
28107484-G-A 25961337-G-A P1_Y2 ***
58846810-C-A 56744061-G-T ***
58847269-G-C 56743602-C-G ***
28107486-T-C 25961339-T-C P1_Y2 ***
28108404-G-A 25962257-G-A P1_Y2 ***
28491120-A-C 26344973-A-C ***
27923101-A-G 25776954-A-G P1_Y2 ***
58846796-A-G 56744075-T-C ***
58845214-A-C 56745657-T-G ***
58848437-C-T 56742434-G-A ***
28818189-G-C 26672042-G-C ***
28802768-C-G 26656621-C-G ***
58832664-G-A 56758207-C-T ***
58840131-A-C 56750740-T-G ***
58840105-A-C 56750766-T-G ***
58840155-T-C 56750716-A-G ***
58840100-T-C 56750771-A-G ***
58840097-G-A 56750774-C-T ***
58840087-T-A 56750784-A-T ***
27923100-G-A 25776953-G-A P1_Y2 ***
58840161-A-C 56750710-T-G ***
58844904-G-T 56745967-C-A ***
58830836-T-A 56760035-A-T ***
58828971-C-T 56761900-G-A ***
58828968-T-C 56761903-A-G ***
58824561-T-G 56766310-A-C ***
58840170-T-C 56750701-A-G ***
58840212-T-A 56750659-A-T ***
58824546-G-T 56766325-C-A ***
58823275-C-T 56767596-G-A ***
58832674-C-A 56758197-G-T ***
27851093-G-A 25704946-G-A P1_Y2 ***
27923099-T-C 25776952-T-C P1_Y2 ***
22499018-C-G 20337132-C-G DYZ19 ***
25870933-G-A 23724786-G-A P1_Y1 ***
25553079-G-T 23406932-G-T P1_gr1 ***
25519825-C-A 23373678-C-A P1_gr1 ***
25519816-T-C 23373669-T-C P1_gr1 ***
25519801-T-C 23373654-T-C P1_gr1 ***
25207932-G-T 23061785-G-T P2_r1 ***
25207822-C-A 23061675-C-A P2_r1 51×A***
24539522-C-T 22393375-C-T P3_t2 ***
22637374-C-A 20475488-C-A ***
22504362-G-T 20342476-G-T DYZ19 ***
22503789-T-C 20341903-T-C DYZ19 ***
22495902-A-G 20334016-A-G DYZ19 ***
25923656-T-G 23777509-T-G P1_Y1 ***
22456947-C-G 20295061-C-G DYZ19 ***
22456919-C-T 20295033-C-T DYZ19 ***
22421604-T-A 20259718-T-A DYZ19 ***
22367956-G-T 20206070-G-T DYZ19 ***
22367929-C-G 20206043-C-G DYZ19 ***
22367074-T-G 20205188-T-G DYZ19 ***
22366488-T-A 20204602-T-A DYZ19 ***
22364450-A-T 20202564-A-T DYZ19 ***
22344488-A-T 20182602-A-T DYZ19 ***
22343603-T-G 20181717-T-G FGC80736 DYZ19 ***
22343314-T-C 20181428-T-C DYZ19 ***
22343313-G-A 20181427-G-A DYZ19 ***
25870936-G-C 23724789-G-C P1_Y1 ***
25958124-A-T 23811977-A-T P1_Y1 ***
27922957-A-T 25776810-A-T P1_Y2 ***
27407202-A-T 25261055-A-T P1_g3 ***
27870482-T-G 25724335-T-G P1_Y2 ***
27870448-C-T 25724301-C-T P1_Y2 ***
27870447-T-G 25724300-T-G P1_Y2 ***
27870440-T-C 25724293-T-C P1_Y2 ***
58848445-T-C 56742426-A-G ***
27851044-G-A 25704897-G-A P1_Y2 ***
27487313-G-T 25341166-G-T P1_Y2 ***
27487308-A-G 25341161-A-G P1_Y2 ***
27487300-G-T 25341153-G-T P1_Y2 ***
27407235-A-G 25261088-A-G P1_g3 ***
27407207-T-G 25261060-T-G P1_g3 ***
27407169-T-G 25261022-T-G P1_g3 ***
25958128-A-G 23811981-A-G P1_Y1 ***
27265659-A-T 25119512-A-T P1_g3 ***
27134162-A-G 24988015-A-G P1_g3 ***
26370560-T-C 24224413-T-C P1_Y1 ***
26370559-G-A 24224412-G-A P1_Y1 ***
26370558-T-C 24224411-T-C P1_Y1 ***
26257716-A-C 24111569-A-C P1_Y1 ***
26257713-G-A 24111566-G-A P1_Y1 ***
26216113-T-G 24069966-T-G P1_Y1 ***
26216109-T-G 24069962-T-G P1_Y1 ***
26143716-T-C 23997569-T-C P1_Y1 ***
26070002-G-C 23923855-G-C P1_Y1 ***
26067818-C-T 23921671-C-T P1_Y1 ***
58848444-A-C 56742427-T-G ***
58880932-T-C 56709939-A-G ***
58848462-C-T 56742409-G-A ***
22231933-GT-CC 20070047-GT-CC DYZ19 ***
22352926-C-CAAGA 20191040-C-CAAGA DYZ19 ***
22332835-ATGTGTCCAGAG-CAGCAAGAT 20170949-ATGTGTCCAGAG-CAGCAAGAT DYZ19 ***
22332810-TTACGTCCAGAGTTTGTTCCTTT-GTGCGGACCCAAAGAGTGAGC 20170924-TTACGTCCAGAGTTTGTTCCTTT-GTGCGGACCCAAAGAGTGAGC DYZ19 ***
22332803-AC-A 20170917-AC-A DYZ19 ***
22332799-A-TC 20170913-A-TC DYZ19 ***
22332761-AG-CT 20170875-AG-CT DYZ19 ***
22330200-T-TC 20168314-T-TC DYZ19 ***
22309955-TT-AG 20148069-TT-AG DYZ19 ***
22267248-CA-TG 20105362-CA-TG DYZ19 ***
22235008-TG-CA 20073122-TG-CA DYZ19 ***
22231970-CCTA-GCTT 20070084-CCTA-GCTT DYZ19 ***
21411718-CA-C 19249832-CA-C 31×A***
22421424-TAGGTGCC-AAGCTGCA 20259538-TAGGTGCC-AAGCTGCA DYZ19 ***
21148589-C-CAAAAA 18986703-C-CAAAAA 30×A***
20688369-GGCGTCACTTG-AACATCATTAA 18526483-GGCGTCACTTG-AACATCATTAA P4_Prx ***
20688355-CAT-AATG 18526469-CAT-AATG P4_Prx ***
20688349-AAC-A 18526463-AAC-A P4_Prx ***
20688332-CATTTAATCAGC-TATACAAGTAGA 18526446-CATTTAATCAGC-TATACAAGTAGA P4_Prx ***
20688300-AAGCAA-CAGGAT 18526414-AAGCAA-CAGGAT P4_Prx ***
20569614-C-CAAAAAAAAAA 18407728-C-CAAAAAAAAAA P5_Dst 33×A***
20420253-CAGAA-GAGAG 18258367-CAGAA-GAGAG P5_Dst ***
20347283-GGAGT-TGAGC 18185397-GGAGT-TGAGC P5_Dst ***
20347260-AGT-TGC 18185374-AGT-TGC P5_Dst ***
20342601-TG-AT 18180715-TG-AT P5_Dst ***
22421061-CA-C 20259175-CA-C DYZ19 ***
22421679-CCAGT-GCAGA 20259793-CCAGT-GCAGA DYZ19 ***
19774419-TTC-CTG 17662539-TTC-CTG P5_Prx ***
27520710-ATGTTCAAGG-A 25374563-ATGTTCAAGG-A P1_Y2 ***
59013640-TTTTTTTT-AAATATATATATA 56867493-TTTTTTTT-AAATATATATATA ***
59007959-C-CAAAAAAAA 56861812-C-CAAAAAAAA 26×A***
58877133-GT-TC 56713737-AC-GA ***
58870549-TTG-T 56720318-GAC-G ***
58844971-GATG-CATT 56745897-CATC-AATG ***
58843778-ACGATTCC-TGGAGTCA 56747086-GGAATCGT-TGACTCCA ***
58843676-GTTT-ATTC 56747192-AAAC-GAAT ***
58830823-ACATTC-CGATTT 56760043-GAATGT-AAATCG ***
28107511-CT-C 25961364-CT-C P1_Y2 ***
27938167-TTTTA-CTAG 25792020-TTTTA-CTAG P1_Y2 ***
27862547-A-AGAGC 25716400-A-AGAGC P1_Y2 ***
27520670-TGGATCC-GTGTGCT 25374523-TGGATCC-GTGTGCT P1_Y2 ***
22450600-GG-AA 20288714-GG-AA DYZ19 ***
27407148-GAACG-AAACT 25261001-GAACG-AAACT P1_g3 ***
27134156-AAG-A 24988009-AAG-A P1_g3 ***
26207960-ACCCATCT-A 24061813-ACCCATCT-A P1_Y1 ***
26207943-CG-AC 24061796-CG-AC P1_Y1 ***
26060168-C-CAAAAAAAAA 23914021-C-CAAAAAAAAA P1_Y1 39×A***
24686428-C-CTTTTTTTG 22540281-C-CTTTTTTTG P3_b2 23×T***
24566495-G-GA 22420348-G-GA P3_t2 ***
24264513-CTTTTTT-C 22118366-CTTTTTT-C P3_b1 18×T***
22499006-TTTCG-GTTCA 20337120-TTTCG-GTTCA DYZ19 ***
22495925-AGTGAGTGT-GGTGTGTGA 20334039-AGTGAGTGT-GGTGTGTGA DYZ19 ***
22495725-AGTTGTG-A 20333839-AGTTGTG-A DYZ19 ***
22480975-TCAGT-ACACA 20319089-TCAGT-ACACA DYZ19 ***
20009300-CTC-AAT 17897420-CTC-AAT P5_Prx ***
19600283-T-TA 17488403-T-TA P5_Prx ***
58855652-G-C 56735219-C-G ***
58891824-A-C 56699047-T-G ***
3205858-C-CAAAAAA 3337817-C-CAAAAAA 15×A***
2810366-A-ATTTTTTT 2942325-A-ATTTTTTT 23×T***
2793170-ATT-A 2925129-ATT-A ***
13287973-ATA-CTC 11132297-ATA-CTC ***
4634602-AAT-A 4766561-AAT-A 9×AT***
22244926-GA-G 20083040-GA-G DYZ19 ***
13140153-CTCCAT-C 10629639-CTCCAT-C 12×TCCAT***
58908512-A-T 56682359-T-A ***
58908501-C-A 56682370-G-T ***
58904192-G-C 56686679-C-G ***
58904182-A-C 56686689-T-G ***
58890017-C-A 56700854-G-T ***
3878644-C-CAAA 4010603-C-CAAA 15×A***
58886147-C-T 56704724-G-A ***
58886141-C-T 56704730-G-A ***
58882188-T-C 56708683-A-G ***
58880934-G-A 56709937-C-T ***
22342847-C-T 20180961-C-T DYZ19 ***
58879788-C-T 56711083-G-A ***
58877159-A-C 56713712-T-G ***
58876160-G-C 56714711-C-G ***
58876136-G-A 56714735-C-T ***
58876126-T-A 56714745-A-T ***
58864018-A-T 56726853-T-A ***
58861657-T-A 56729214-A-T ***
3615472-G-GAA 3747431-G-GAA 14×A***
3878659-A-AAAG 4010618-A-AAAG ***
19600260-CTA-TTG 17488380-CTA-TTG P5_Prx ***
13472930-CTGA-TTGT 11317254-CTGA-TTGT ***
19569882-CA-T 17458002-CA-T P5_Prx ***
16140961-CC-TT 14029081-CC-TT P8_Dst ***
16031378-A-ATC 13919498-A-ATC ***
13932166-TA-AT 11811460-TA-AT ***
13864559-T-TGGAAC 11743853-T-TGGAAC ***
13545271-CAAAGAAT-AAAA 11389595-CAAAGAAT-AAAA ***
13535664-TAT-CAC 11379988-TAT-CAC ***
13531753-C-CACGAAA 11376077-C-CACGAAA 23×A***
13488959-GCCCA-TCACC 11333283-GCCCA-TCACC ***
13487635-TGCT-CGCG 11331959-TGCT-CGCG ***
13484458-TAAT-CAAA 11328782-TAAT-CAAA ***
13472916-TAG-AAC 11317240-TAG-AAC ***
3930579-ATATA-GTGTG 4062538-ATATA-GTGTG ***
13467771-CA-C 11312095-CA-C ***
13456019-GATTCCATTCCATTCCATTCC-G 11300343-GATTCCATTCCATTCCATTCC-G 11×ATTCC***
13454832-TATTCC-T 11299156-TATTCC-T ***
13448633-GCATTCCATTCCATTCC-G 11292957-GCATTCCATTCCATTCC-G 13×CATTC***
13405153-TT-A 11249477-TT-A ***
10084395-A-AT 10246786-A-AT ***
10084390-G-GA 10246781-G-GA ***
8184338-AATGTTATAAACACTCTG-A 8316297-AATGTTATAAACACTCTG-A ***
8160178-C-CAAAAAAAAAAAAA 8292137-C-CAAAAAAAAAAAAA 20×A***
7201570-TCCCTTCCA-CCCCCTCCC 7333529-TCCCTTCCA-CCCCCTCCC ***
6089764-G-GTTTTTTTTTTT 6221723-G-GTTTTTTTTTTT 31×T***
4560291-C-CA 4692250-C-CA 10×A***
22343312-A-T 20181426-A-T DYZ19 ***
22295848-C-G 20133962-C-G DYZ19 ***
22342783-A-C 20180897-A-C DYZ19 ***
22367126-G-C 20205240-G-C DYZ19 ***
58844970-T-C 56745901-A-G ***
58844950-G-C 56745921-C-G ***
13537392-A-T 11381716-A-T FGC7972 ***
22223603-A-C 20061717-A-C DYZ19 ***
22245736-AG-A 20083850-AG-A DYZ19 ***
21853677-C-CAAAAAA 19691791-C-CAAAAAA 43×A***
58844956-G-C 56745915-C-G ***
22337705-A-C 20175819-A-C DYZ19 ***
7481350-G-GT 7613309-G-GT IR1_L 12×T***
26508346-C-T 24362199-C-T P1_Y1 ***
8972442-C-A 9134833-C-A ***
9939366-C-A 10101757-C-A ***
22352931-A-T 20191045-A-T DYZ19 ***
28819269-GGTA-TGGG 26673122-GGTA-TGGG ***
24408991-ACCC-A 22262844-ACCC-A 14×C***
22309354-TAGAA-CAGAG 20147468-TAGAA-CAGAG DYZ19 ***
13470158-AGG-GCC 11314482-AGG-GCC ***
58903222-G-C 56687649-C-G ***
22365977-GGTGG-TGTTA 20204091-GGTGG-TGTTA DYZ19 ***
22366765-T-C 20204879-T-C DYZ19 ***
22236364-T-C 20074478-T-C DYZ19 ***
22367118-GA-AG 20205232-GA-AG DYZ19 ***
13435360-ATA-GTC 11279684-ATA-GTC ***
13710117-T-C 11554441-T-C ***
7026596-C-G 7158555-C-G ***
22367107-C-A 20205221-C-A DYZ19 ***
22292745-GT-CA 20130859-GT-CA DYZ19 ***
13472933-A-T 11317257-A-T ***
7201588-T-C 7333547-T-C ***
7573168-G-A 7705127-G-A ***
9956214-T-C 10118605-T-C ***
9956228-G-A 10118619-G-A ***
9956232-A-G 10118623-A-G ***
58908589-TCAC-CCAT 56682279-GTGA-ATGG ***
28784306-GGAAAA-G 26638159-GGAAAA-G ***
22235087-A-AC 20073201-A-AC DYZ19 ***
13864542-TATGTCATT-AATG 11743836-TATGTCATT-AATG ***
10084308-TA-T 10246699-TA-T ***
58904203-G-A 56686668-C-T ***
58908603-C-T 56682268-G-A ***
58904194-C-T 56686677-G-A ***
58903546-T-C 56687325-A-G ***
58874466-G-T 56716405-C-A ***
58830841-G-T 56760030-C-A ***
58830812-G-T 56760059-C-A ***
28405637-T-A 26259490-T-A P1_gr2 ***
22421634-A-T 20259748-A-T DYZ19 ***
22421614-T-C 20259728-T-C DYZ19 ***
58847217-G-T 56743654-C-A ***
58877059-AGCGGA-C 56713807-TCCGCT-G ***
13487111-C-GCCT 11331435-C-GCCT ***
9952737-TT-GC 10115128-TT-GC ***
22502940-A-T 20341054-A-T DYZ19 ***
13472906-A-C 11317230-A-C F18178 ***
13393318-A-G 11237642-A-G ***
22366791-C-T 20204905-C-T DYZ19 ***
22366768-C-T 20204882-C-T DYZ19 ***
22365692-A-C 20203806-A-C DYZ19 ***
13393324-G-T 11237648-G-T ***
22309239-C-T 20147353-C-T DYZ19 ***
10029616-G-T 10192007-G-T ***
13476008-G-A 11320332-G-A ***
15171226-CTTTTTTT-C 13059312-CTTTTTTT-C 19×T***
13463573-C-CG 11307897-C-CG ***
22309415-A-C 20147529-A-C DYZ19 ***
16340147-G-AA 14228267-G-AA 22×A***
22367204-A-G 20205318-A-G DYZ19 ***
22352949-C-A 20191063-C-A DYZ19 ***
58981976-TTTCCAC-T 56835829-TTTCCAC-T ***
13203955-CATCATT-GACAATA 11048279-CATCATT-GACAATA ***
13203965-GA-G 11048289-GA-G ***
22358856-G-A 20196970-G-A DYZ19 ***
13129710-T-C 10619196-T-C ***
13129675-A-T 10619161-A-T ***
13129673-T-C 10619159-T-C ***
13467063-G-T 11311387-G-T ***
28818250-C-T 26672103-C-T ***
28818242-A-G 26672095-A-G ***
22367193-C-T 20205307-C-T DYZ19 ***
22367227-T-G 20205341-T-G DYZ19 ***
22495918-G-A 20334032-G-A DYZ19 ***
58821131-GATTCTCT-CATTTTC 56769733-AGAGAATC-GAAAATG ***
22420891-G-C 20259005-G-C DYZ19 ***
22420848-A-G 20258962-A-G DYZ19 ***
23901429-N-C 21739543-N-C ***
22342748-A-C 20180862-A-C DYZ19 ***
22366002-ACCAGAGG-TCCAGAGT 20204116-ACCAGAGG-TCCAGAGT DYZ19 ***
22364523-T-A 20202637-T-A DYZ19 ***
10090635-G-C 10253026-G-C ***
13470168-AG-CC 11314492-AG-CC ***
9952770-TG-CA 10115161-TG-CA ***
58877158-G-T 56713713-C-A ***
13616570-A-C 11460894-A-C ***
13203970-CCACCCCGCCTC-TAAT 11048294-CCACCCCGCCTC-TAAT ***
22367253-C-G 20205367-C-G DYZ19 ***
9980884-GA-G 10143275-GA-G ***
17239290-T-TTATA 15127410-T-TTATA 17×TA***
22365861-A-G 20203975-A-G DYZ19 ***
22309320-T-A 20147434-T-A DYZ19 ***
22342343-G-C 20180457-G-C DYZ19 ***
26370572-G-GAA 24224425-G-GAA P1_Y1 ***
26370578-T-G 24224431-T-G P1_Y1 ***
26370576-C-G 24224429-C-G P1_Y1 ***
22342970-T-G 20181084-T-G DYZ19 ***
22480958-G-C 20319072-G-C DYZ19 ***
58874495-C-A 56716376-G-T ***
13467068-T-A 11311392-T-A ***
13467057-T-G 11311381-T-G ***
22337554-G-A 20175668-G-A DYZ19 ***
20133238-A-C 18021358-A-C P5_Dst ***
21004289-G-A 18842403-G-A P4_Dst ***
20693261-C-T 18531375-C-T P4_Prx ***
20688364-A-T 18526478-A-T P4_Prx ***
20609877-T-C 18447991-T-C P5_Dst ***
20580382-C-G 18418496-C-G P5_Dst ***
20580377-A-T 18418491-A-T P5_Dst ***
20420270-A-T 18258384-A-T P5_Dst ***
20420257-A-G 18258371-A-G P5_Dst ***
20420253-C-G 18258367-C-G P5_Dst ***
20255677-C-A 18093791-C-A P5_Dst ***
20133236-A-G 18021356-A-G P5_Dst ***
21829989-G-A 19668103-G-A ***
20125108-T-C 18013228-T-C P5_Dst ***
20104706-A-G 17992826-A-G P5_Dst ***
20009310-T-A 17897430-T-A P5_Prx ***
19803237-A-G 17691357-A-G P5_Prx ***
19803235-C-T 17691355-C-T P5_Prx ***
19803210-A-T 17691330-A-T P5_Prx ***
19774427-A-T 17662547-A-T P5_Prx ***
19769645-A-C 17657765-A-C P5_Prx ***
19769643-C-T 17657763-C-T P5_Prx ***
19769640-A-C 17657760-A-C P5_Prx ***
19663063-T-G 17551183-T-G P5_Prx ***
21208751-C-A 19046865-C-A ***
22223545-C-A 20061659-C-A DYZ19 ***
19662172-T-A 17550292-T-A P5_Prx ***
22332536-T-G 20170650-T-G DYZ19 ***
22332849-T-A 20170963-T-A DYZ19 ***
22332836-T-A 20170950-T-A DYZ19 ***
22332835-A-C 20170949-A-C DYZ19 ***
22332827-T-G 20170941-T-G DYZ19 ***
22332826-T-A 20170940-T-A DYZ19 ***
22332823-T-G 20170937-T-G DYZ19 ***
22332822-T-A 20170936-T-A DYZ19 ***
22332819-G-A 20170933-G-A DYZ19 ***
22332815-T-C 20170929-T-C DYZ19 ***
22332799-A-C 20170913-A-C DYZ19 ***
14991027-C-G 12879112-C-G CTS3525 ***
22324815-G-A 20162929-G-A DYZ19 ***
22224146-A-T 20062260-A-T DYZ19 ***
22309791-T-C 20147905-T-C DYZ19 ***
22309762-T-C 20147876-T-C DYZ19 ***
22309681-A-G 20147795-A-G DYZ19 ***
22268266-C-G 20106380-C-G DYZ19 ***
22267273-A-G 20105387-A-G DYZ19 ***
22245071-G-A 20083185-G-A DYZ19 ***
22234726-T-C 20072840-T-C DYZ19 ***
22231973-A-T 20070087-A-T DYZ19 ***
22231961-A-G 20070075-A-G DYZ19 ***
22231959-A-G 20070073-A-G DYZ19 ***
22231955-G-C 20070069-G-C DYZ19 ***
19662177-A-G 17550297-A-G P5_Prx ***
19646378-C-G 17534498-C-G P5_Prx ***
10104557-N-G 10266948-N-G ***
22343455-G-C 20181569-G-C DYZ19 ***
6300159-A-G 6432118-A-G IR3_Dst ***
6300158-C-T 6432117-C-T IR3_Dst ***
6300157-G-T 6432116-G-T IR3_Dst ***
4910905-G-T 5042864-G-T ***
4909906-A-G 5041865-A-G ***
4044971-A-T 4176930-A-T FGC81652 ***
3930597-A-G 4062556-A-G ***
22223563-C-A 20061677-C-A DYZ19 ***
13467726-A-G 11312050-A-G ***
3512063-G-C 3644022-G-C ***
13487725-G-A 11332049-G-A ***
9559510-G-A 9721901-G-A IR3_Prx ***
22343623-C-A 20181737-C-A DYZ19 ***
9781439-T-A 9943830-T-A ***
13932166-T-A 11811460-T-A ***
22267284-C-G 20105398-C-G DYZ19 ***
13932167-A-T 11811461-A-T 11×AT***
13541022-C-A 11385346-C-A ***
10104559-N-T 10266950-N-T ***
10104562-N-G 10266953-N-G ***
10104560-N-C 10266951-N-C ***
58912183-G-C 56678688-C-G ***
13512468-T-A 11356792-T-A ***
9559492-T-G 9721883-T-G IR3_Prx 17×TG***
9559520-G-A 9721911-G-A IR3_Prx ***
19600272-C-T 17488392-C-T P5_Prx ***
13485345-G-C 11329669-G-C ***
18463312-C-T 16351432-C-T P6_Dst ***
18363399-C-T 16251519-C-T P6_Prx ***
18363398-T-C 16251518-T-C P6_Prx ***
18363390-T-C 16251510-T-C P6_Prx ***
18330808-G-A 16218928-G-A P6_Prx ***
16996806-T-C 14884926-T-C ***
16140962-C-T 14029082-C-T P8_Dst ***
15296073-T-C 13184172-T-C ***
13728333-A-T 11572657-A-T ***
13701985-A-C 11546309-A-C ***
13487885-C-T 11332209-C-T ***
13472916-T-A 11317240-T-A ***
9570176-G-A 9732567-G-A IR3_Prx ***
13463597-G-A 11307921-G-A ***
13419968-T-A 11264292-T-A ***
13407200-G-A 11251524-G-A ***
13346064-T-G 11190388-T-G ***
10104558-N-A 10266949-N-A ***
10092414-T-A 10254805-T-A ***
10090758-G-T 10253149-G-T ***
10084383-A-T 10246774-A-T ***
9891067-T-C 10053458-T-C ***
9687636-C-T 9850027-C-T IR3_Prx ***
9625114-T-A 9787505-T-A IR3_Prx ***
14919271-C-CTTT 12807338-C-CTTTTT 45×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
MacLennan1325141011-13121212131429179-1011112415182915-16-16-17111119-231716181638-38121211915-1681010810101223-231610121217812262013121113111112123415916122426191311121211912121011113012132413101021151913241713152412231810141791211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: TLW6C*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs76
Variant counts last updated 2019-06-17 00:09:25.

* BED data not available. Using default values.

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