Jones

BigY3: N97202, BigY2: N97202
MDKA Birth: Wales

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > S5488 > Z16294 > BY11121 > ZZ21 > BY3827 > BY18887 > BY35673

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
N97202		BigY2
N97202
58975846-T-C 56829699-T-C A*
18342823-A-G 16230943-A-G P6_Prx A*A*
10627516-T-G A*
11663246-G-A FT450777 DYZ17 +**
7635600-A-G 7767559-A-G FT174141 YY+**
21817472-A-T 19655586-A-T BY162988 YY++
23959025-A-T 21812878-A-T BY163379 Y++
16009423-C-A 13897543-C-A FT175734 Y+
56840695-G-A *
13696416-A-T 11540740-A-T DYZ17 **
7340243-C-A 7472202-C-A L535 M5401 **
23284159-C-A 21122273-C-A CTS11799 **
16842077-C-T 14730197-C-T PF1703 M5479 CTS6355 **
19218248-T-A 17106368-T-A PF2165 CTS10031 **
27967338-A-G 25821191-A-G P1_Y2 **
13465606-G-C 11309930-G-C BY85726 **
14213757-G-A 12093051-G-A M10638 13×AGAA**
8855352-G-A 8987311-G-A **
13839806-G-A 11719100-G-A Y132195 DYZ17 **
16309412-A-G 14197532-A-G L19CTS5480 PF2360 **
16344572-C-T 14232692-C-T Z28241 10×CTT**
28674695-C-T 26528548-C-T Y32986 **
19007643-C-T 16895763-C-T **
8391564-T-TA 8523523-T-TA A13218 10×A**
10926657-C-T **
13855894-C-A 11735188-C-A FT328787 DYZ17 **
21134769-A-T 18972883-A-T **
10800795-TGCACCGTTCC-T **
10800832-C-T **
10748211-A-G **
10748212-T-A **
10748231-C-CA **
10748276-C-T **
10984453-C-A **
10748284-T-C **
21702045-CA-C 19540159-CA-C 10×A**
7186804-A-AT 7318763-A-AT 9×T**
8843626-C-A 8975585-C-A **
10898397-C-A **
10987202-C-A **
10918212-G-T **
23476053-C-A 21314167-C-A **
11643727-T-A DYZ17 **
10926652-C-A **
10984473-A-T **
10984527-C-T **
10984531-T-G **
10748177-T-G **
10748216-G-C **
10880338-A-T **
8846629-CTAAT-C 8978588-CTAAT-C 4×TAAT**
7543922-C-A 7675881-C-A **
11008943-A-C **
11008950-A-C **
6580087-C-A 6712046-C-A **
10980631-G-A **
13453257-T-G 11297581-T-G **
7163230-C-A 7295189-C-A **
7656859-C-A 7788818-C-A **
21714666-G-T 19552780-G-T **
10992320-C-A **
56843776-G-A **
16562887-C-A 14451007-C-A **
10892542-T-TCATTCCATTC **
10958398-C-A **
15690101-C-A 13578221-C-A **
10823578-C-A **
8702851-C-A 8834810-C-A **
28791315-G-A 26645168-G-A **
4769354-C-A 4901313-C-A **
2914993-C-A 3046952-C-A **
13696425-C-A 11540749-C-A DYZ17 **
10689088-CATCCA-C **
15685149-AAACAAC-A 13573269-AAACAAC-A 13×AAC**
8070043-C-A 8202002-C-A **
13482953-C-A 11327277-C-A **
3367150-C-A 3499109-C-A **
10898385-C-T **
23953098-C-A 21806951-C-A **
10898350-T-G **
10898370-T-C **
28531475-C-CA 26385328-C-CA 8×A**
18082853-G-T 15970973-G-T **
20715260-A-C 18553374-A-C P4_Prx **
13643495-C-A 11487819-C-A **
15264727-AT-A 13152817-AT-A **
6787074-C-A 6919033-C-A **
14102087-C-A 11981381-C-A **
10789480-A-G **
10803427-TTTCCA-T **
10880285-T-G **
21096201-C-T 18934315-C-T **
21433190-C-A 19271304-C-A **
13474687-G-A 11319011-G-A **
17210881-A-T 15099001-A-T **
6992593-C-A 7124552-C-A **
3804596-C-A 3936555-C-A **
11644762-G-A FGC77991 DYZ17 **
18037839-C-A 15925959-C-A **
18443437-A-T 16331557-A-T P6_Dst **
22730614-A-G 20568728-A-G **
56842939-G-T **
10926655-T-A **
13522963-T-G 11367287-T-G **
18247338-C-A 16135458-C-A **
15777090-C-A 13665210-C-A **
22264301-T-A 20102415-T-A DYZ19 **
6771485-C-A 6903444-C-A **
24523652-C-A 22377505-C-A **
11008953-C-T **
15440623-C-A 13328743-C-A **
7996865-C-A 8128824-C-A **
17210892-A-T 15099012-A-T **
24420788-C-A 22274641-C-A **
13226909-C-A 11071233-C-A **
6918334-C-A 7050293-C-A **
20052714-G-T 17940834-G-T P5_Prx **
18685414-C-A 16573534-C-A **
23833054-C-A 21671168-C-A **
13453225-A-G 11297549-A-G **
10657224-C-A **
3366715-C-A 3498674-C-A **
6475373-C-A 6607332-C-A **
4889718-C-A 5021677-C-A **
11014530-T-C **
2744720-C-A 2876679-C-A **
7534644-A-ACAC 7666603-A-ACAC **
9476028-G-T 9638419-G-T **
10851877-G-T **
56834627-CCATTT-C **
56843779-T-G **
14213753-A-G 12093047-A-G **
3726248-C-A 3858207-C-A **
3818360-T-G 3950319-T-G **
4243311-C-A 4375270-C-A **
4302023-A-T 4433982-A-T **
4633624-C-A 4765583-C-A **
5586600-G-A 5718559-G-A **
5859086-C-A 5991045-C-A **
6427646-T-C 6559605-T-C **
6933342-G-T 7065301-G-T **
7541585-A-T 7673544-A-T **
7873735-T-G 8005694-T-G **
8276182-T-G 8408141-T-G **
8466172-T-C 8598131-T-C **
8658664-T-C 8790623-T-C **
8671184-C-A 8803143-C-A **
8750549-CT-C 8882508-CT-C **
9124345-T-C FT137866 **
9544390-A-C 9706781-A-C IR3_Prx **
9631691-GTGTGT-G 9794082-GTGTGT-G IR3_Prx **
9774873-C-A 9937264-C-A **
9784677-C-T 9947068-C-T **
9877849-G-T 10040240-G-T **
10692292-C-A **
10692375-T-C **
10744847-C-T **
10757383-T-C **
10776545-TCCATTCCATA-T **
10801643-A-G **
10844894-A-T **
10864263-C-A **
10883177-C-A **
10895306-G-A **
10919254-G-T **
10959031-C-A **
10982276-C-CT **
10996198-A-C **
13453205-AC-A 11297529-AC-A **
13453235-ATT-A 11297559-ATT-A **
13461835-C-A 11306159-C-A **
13465609-A-C 11309933-A-C **
13465614-A-G 11309938-A-G BY210297 **
13504847-G-T 11349171-G-T **
11643732-T-TAAACGCGAGTCCAGG DYZ17 **
14066881-C-A 11946175-C-A **
14067760-C-A 11947054-C-A **
14255244-C-T 12134538-C-T **
14263292-A-G 12142586-A-G **
14324919-TTGAG-T 12204213-TTGAG-T **
14367673-A-C 12246969-A-C **
14367838-G-A 12247134-G-A **
14500328-T-C 12388533-T-C **
14573050-A-G 12461250-A-G **
14747418-C-A 12635487-C-A **
14775922-C-A 12663991-C-A **
14831806-G-T 12719873-G-T **
14880375-A-T 12768445-A-T **
15070478-G-T 12958569-G-T **
15093665-T-G 12981753-T-G **
15749432-C-A 13637552-C-A **
15963846-G-T 13851966-G-T **
15971178-C-A 13859298-C-A **
16028694-G-T 13916814-G-T **
16270329-G-A 14158449-G-A **
16282256-G-A 14170376-G-A **
16431013-G-T 14319133-G-T **
16539855-C-T 14427975-C-T **
16651887-C-A 14540007-C-A **
16913291-G-T 14801411-G-T **
16913295-G-T 14801415-G-T **
16943442-A-G 14831562-A-G **
16961457-C-A 14849577-C-A **
17319934-A-C 15208054-A-C **
17382292-A-C 15270412-A-C **
17386680-G-A 15274800-G-A **
17513246-T-G 15401366-T-G **
17560650-C-A 15448770-C-A **
17658053-G-A 15546173-G-A **
17793283-C-A 15681403-C-A **
17863399-T-TTG 15751519-T-TTG 4×TTTTG**
17863414-G-GTT 15751534-G-GTT **
17863419-G-GTT 15751539-G-GTT **
18144141-A-T 16032261-A-T **
18442873-T-C 16330993-T-C P6_Dst **
18853142-C-A 16741262-C-A **
19035801-T-A 16923921-T-A **
19054342-CTTTTTT-C 16942462-CTTTTTT-C 16×T**
19324068-C-A 17212188-C-A **
19346402-T-G 17234522-T-G **
19423858-A-C 17311978-A-C **
19754914-C-A 17643034-C-A P5_Prx **
19965517-A-C 17853637-A-C P5_Prx **
20620930-A-C 18459044-A-C P4_Prx **
20989105-A-G 18827219-A-G P4_Dst **
21096206-G-A 18934320-G-A **
21113044-T-C 18951158-T-C **
21115559-C-A 18953673-C-A **
21125754-A-G 18963868-A-G **
21383281-G-T 19221395-G-T **
21434992-A-G 19273106-A-G **
21450893-G-T 19289007-G-T FGC9543 **
21605024-G-C 19443138-G-C **
21703835-C-A 19541949-C-A **
21714637-T-AC 19552751-T-AC **
21714639-CT-C 19552753-CT-C **
21905370-AC-A 19743484-AC-A **
22207266-C-A 20045380-C-A FT348633 **
22337747-A-T 20175861-A-T DYZ19 **
22521222-C-A 20359336-C-A **
22675593-C-A 20513707-C-A **
22730512-C-A 20568626-C-A **
22802352-C-A 20640466-C-A **
22876489-G-A 20714603-G-A FTB19586 **
23037185-G-T 20875299-G-T **
23306457-C-A 21144571-C-A **
23770659-C-A 21608773-C-A **
24205594-C-A 22059447-C-A P3_b1 **
24951045-C-A 22804898-C-A g1 **
25651747-T-A 23505600-T-A P1_b3 **
26346061-A-G 24199914-A-G P1_Y1 **
26415734-AT-A 24269587-AT-A P1_Y1 **
27733760-A-T 25587613-A-T P1_Y2 **
28583732-T-A 26437585-T-A **
28699943-A-C 26553796-A-C **
56763510-T-G **
56828226-TTCGAA-T **
56841206-T-C **
56843780-T-G **
56858647-A-T **
4277201-C-CTT 4409160-C-CTT 20×T**
3791932-T-C 3923891-T-C **
8725421-T-A 8857380-T-A **
13287013-CA-C 11131337-CA-C **
13612803-G-C 11457127-G-C **
18017152-TAC-T 15905272-TAC-T **
23019226-T-C 20857340-T-C **
24270903-T-G 22124756-T-G P3_b1 **
27971391-C-T 25825244-C-T P1_Y2 **
7759944-A-G 7891903-A-G FGC57 L1067 SK2079 Z8148 ***
13488044-C-A 11332368-C-A ***
14073053-G-A 11952347-G-A PF3699 CTS1800 ***
4375415-TAC-T 4507374-TAC-T ***
7028085-G-A 7160044-G-A CTS808 ***
21188925-A-C 19027039-A-C PF2174 ***
17300520-T-A 15188640-T-A BY48821 FGC80681 12×A***
58979766-ACCCCACTCAT-A 56833619-ACCCCACTCAT-A ***
13856327-G-GA 11735621-G-GA DYZ17 ***
21153106-C-A 18991220-C-A ***
9907326-T-C 10069717-T-C ***
14940073-CAA-C,CA 12828147-CAA-C,CA 15×A***
12869906-T-TTTCCTTCC 14×TTCC***
10764571-A-AT ***
10758037-T-G ***
10764572-T-TTCAC ***
17441221-C-A 15329341-C-A ***
21079167-C-A 18917281-C-A ***
16528364-C-A 14416484-C-A ***
15422098-CAAA-C,CA 13310218-CAAA-C,CA 20×A***
18685992-GAAA-G 16574112-GAAA-G 13×A***
10999858-C-CCAGAA ***
13447092-C-T 11291416-C-T ***
13447102-C-CTTCT 11291426-C-CTTCT ***
56828953-TC-CTATTAG,T 4×CATTC***
56828209-C-T ***
23061807-G-T 20899921-G-T ***
19023837-C-A 16911957-C-A Y42817 ***
10764546-TTTTC-T,TT ***
10911718-G-A ***
3602926-C-A 3734885-C-A ***
2783734-CAA-C,CA 2915693-CAA-C,CA 15×A***
9422241-C-A 9584632-C-A ***
15604354-CAA-C,CA 13492474-CAA-C,CA 20×A***
3284730-T-C 3416689-T-C ***
7142551-A-G 7274510-A-G ***
7167287-G-T 7299246-G-T ***
7720370-C-A 7852329-C-A ***
8742665-C-A 8874624-C-A ***
8779469-A-G 8911428-A-G ***
8832844-A-G 8964803-A-G ***
10764540-ATG-A,TTT ***
10764560-C-A,G ***
10809554-TATTCCATTCCATTCCATTCCATTCC-T ***
10845712-A-G,T ***
10911572-G-A ***
10985086-TTCCAC-T ***
10999868-C-CCTTTT ***
13447102-C-A,CA 11291426-C-A,CA ***
13935488-C-A 11814782-C-A ***
15254985-A-G 13143071-A-G ***
16612786-C-A 14500906-C-A ***
17193003-T-C 15081123-T-C ***
19053011-C-CTT 16941131-C-CTT 12×T***
19124987-C-A 17013107-C-A ***
21095238-C-A 18933352-C-A ***
21891236-A-G 19729350-A-G ***
22106659-T-C 19944773-T-C ***
22844903-T-C 20683017-T-C ***
23042885-C-A 20880999-C-A ***
23256226-GA-G 21094340-GA-G ***
27647565-G-A 25501418-G-A P1_Y2 ***
56828221-T-G ***
56828234-C-A ***
56828258-C-G ***
56828262-TCCATG-T ***
56844310-C-T ***
13585512-T-G 11429836-T-G ***
4076256-CA-C,CAA 4208215-CA-C,CAA 21×A***
16040967-AT-A,ATT 13929087-AT-A,ATT 14×T***
22241303-G-A 20079417-G-A DYZ19 ***
4056508-TA-T 4188467-TA-T 10×A***
28534940-C-CTTT 26388793-C-CTTT 18×T***
4764812-T-C 4896771-T-C ***
5207359-T-C 5339318-T-C ***
5700976-A-G 5832935-A-G ***
9055199-G-C ***
18390083-CAAA-C,CAA 16278203-CAAA-C,CAA P6_Gap 19×A***
22166535-CTTTT-C,CTTT 20004649-CTTTT-C,CTTT 29×T***
28671838-T-C 26525691-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.