Grant
BigY2: 447737MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 447737 |
---|---|---|---|---|---|---|---|---|
26073931-A-G | 23927784-A-G | P1_Y1 | A* | |||||
28816698-G-A | 26670551-G-A | A* | ||||||
6860902-C-T | 6992861-C-T | Y | Y | + | ||||
6950468-C-T | 7082427-C-T | Y | Y | + | ||||
17527119-T-C | 15415239-T-C | Y | Y | + | ||||
22536403-AAAGC-A | 20374517-AAAGC-A | + | ||||||
16450159-C-A | 14338279-C-A | F339 M2324 | ** | |||||
27424163-C-T | 25278016-C-T | P1_g3 | 17×T | ** | ||||
7416440-G-GGA | 7548399-G-GGA | 8×GA | ** | |||||
13457598-A-T | 11301922-A-T | Z7739 | ** | |||||
18950820-C-A | 16838940-C-A | CTS9533 PF4582 | ** | |||||
21839938-TC-T | 19678052-TC-T | ** | ||||||
8076330-C-A | 8208289-C-A | FGC33377 | ** | |||||
13887619-G-A | 11766913-G-A | Y2329 FGC7628 | ** | |||||
13961257-T-C | 11840551-T-C | CTS1553 M2166 | ** | |||||
14780978-G-A | 12669048-G-A | FT76336 | ** | |||||
8171876-C-A | 8303835-C-A | ** | ||||||
58976377-T-C | 56830230-T-C | ** | ||||||
21939515-C-A | 19777629-C-A | ** | ||||||
24235425-C-CA | 22089278-C-CA | P3_b1 | ** | |||||
10964286-G-T | ** | |||||||
6402508-G-A | 6534467-G-A | ** | ||||||
16342484-G-T | 14230604-G-T | ** | ||||||
18328816-A-C | 16216936-A-C | P6_Prx | ** | |||||
13521833-C-A | 11366157-C-A | ** | ||||||
10893835-A-C | ** | |||||||
26228728-G-T | 24082581-G-T | P1_Y1 | ** | |||||
6682141-C-A | 6814100-C-A | ** | ||||||
7704673-C-A | 7836632-C-A | ** | ||||||
8408449-C-A | 8540408-C-A | ** | ||||||
10791028-C-A | ** | |||||||
15259220-C-A | 13147304-C-A | ** | ||||||
14717666-G-T | 12605734-G-T | ** | ||||||
9514036-C-A | 9676427-C-A | ** | ||||||
16017779-C-A | 13905899-C-A | ** | ||||||
6948191-A-T | 7080150-A-T | ** | ||||||
10842265-CTTCCA-C | ** | |||||||
17313693-C-A | 15201813-C-A | ** | ||||||
2880813-C-A | 3012772-C-A | ** | ||||||
16490021-C-A | 14378141-C-A | ** | ||||||
3334675-T-C | 3466634-T-C | ** | ||||||
24328718-C-A | 22182571-C-A | P3_t1 | ** | |||||
16077542-GC-A | 13965662-GC-A | ** | ||||||
28776857-C-A | 26630710-C-A | ** | ||||||
18565045-G-A | 16453165-G-A | ** | ||||||
14159860-G-T | 12039154-G-T | ** | ||||||
10691391-C-G | ** | |||||||
17276883-C-A | 15165003-C-A | ** | ||||||
6000758-G-T | 6132717-G-T | ** | ||||||
14943047-C-A | 12831121-C-A | ** | ||||||
15427387-C-A | 13315507-C-A | ** | ||||||
13803505-C-A | 11682799-C-A | ** | ||||||
8382248-C-A | 8514207-C-A | ** | ||||||
13523619-C-A | 11367943-C-A | ** | ||||||
14893972-C-CTT | 12782038-C-CTT | 11×T | ** | |||||
7242668-C-A | 7374627-C-A | ** | ||||||
14088720-C-A | 11968014-C-A | ** | ||||||
13231234-C-A | 11075558-C-A | ** | ||||||
10848048-A-C | ** | |||||||
10848062-C-TGATTAGGTGG | ** | |||||||
14932120-C-A | 12820185-C-A | ** | ||||||
10671584-C-A | ** | |||||||
14992245-CT-C | 12880330-CT-C | 8×T | ** | |||||
19312176-C-A | 17200296-C-A | ** | ||||||
17713920-C-T | 15602040-C-T | ** | ||||||
6241152-CA-C | 6373111-CA-C | IR3_Dst | ** | |||||
13472201-ACCAG-A | 11316525-ACCAG-A | ** | ||||||
16321765-G-A | 14209885-G-A | ** | ||||||
13476211-C-G | 11320535-C-G | ** | ||||||
13476231-T-C | 11320555-T-C | ** | ||||||
10980383-C-A | ** | |||||||
24013847-CTATATATATATATATATATATA-C | 21867700-CTATATATATATATATATATATA-C | 21×TA | ** | |||||
27733736-A-G | 25587589-A-G | P1_Y2 | 4×AAAG | ** | ||||
21691856-C-A | 19529970-C-A | ** | ||||||
9735636-C-TT | 9898027-C-TT | IR3_Prx | ** | |||||
15730440-C-A | 13618560-C-A | ** | ||||||
19720734-AG-A | 17608854-AG-A | P5_Prx | ** | |||||
10978679-G-T | ** | |||||||
4957101-C-A | 5089060-C-A | ** | ||||||
14065303-C-A | 11944597-C-A | ** | ||||||
9993545-C-A | 10155936-C-A | FT373887 | ** | |||||
11006545-T-C | ** | |||||||
11006554-C-A | ** | |||||||
11006555-T-A | ** | |||||||
4453940-C-A | 4585899-C-A | ** | ||||||
14052766-T-G | 11932060-T-G | ** | ||||||
14531405-C-A | 12419606-C-A | ** | ||||||
22851291-C-A | 20689405-C-A | ** | ||||||
10976756-T-C | ** | |||||||
11668519-C-G | ** | |||||||
5446345-C-A | 5578304-C-A | ** | ||||||
28478229-C-A | 26332082-C-A | ** | ||||||
23807961-A-G | 21646075-A-G | ** | ||||||
10691373-A-T | ** | |||||||
11020812-C-G | ** | |||||||
14502355-C-A | 12390560-C-A | ** | ||||||
26100576-G-A | 23954429-G-A | P1_Y1 | ** | |||||
15197286-C-A | 13085372-C-A | ** | ||||||
13453224-C-A | 11297548-C-A | ** | ||||||
21911988-G-A | 19750102-G-A | ** | ||||||
24575546-G-T | 22429399-G-T | P3_t2 | ** | |||||
9857331-C-A | 10019722-C-A | ** | ||||||
11006495-A-G | ** | |||||||
15727095-C-A | 13615215-C-A | ** | ||||||
5926987-G-T | 6058946-G-T | ** | ||||||
13245289-C-A | 11089613-C-A | ** | ||||||
18576966-C-A | 16465086-C-A | ** | ||||||
13919691-G-A | 11798985-G-A | ** | ||||||
13298245-C-A | 11142569-C-A | ** | ||||||
18071466-C-A | 15959586-C-A | ** | ||||||
16593744-C-A | 14481864-C-A | ** | ||||||
20669273-TTG-T | 18507387-TTG-T | P4_Prx | ** | |||||
21211665-C-A | 19049779-C-A | ** | ||||||
14373476-A-C | 12252772-A-C | ** | ||||||
9319215-T-A | 9481606-T-A | ** | ||||||
9577079-A-G | 9739470-A-G | IR3_Prx | ** | |||||
14543972-G-A | 12432173-G-A | ** | ||||||
17046340-C-A | 14934460-C-A | ** | ||||||
9057328-G-T | ** | |||||||
16177387-C-A | 14065507-C-A | ** | ||||||
9927582-C-A | 10089973-C-A | ** | ||||||
15533773-C-A | 13421893-C-A | ** | ||||||
23433641-C-A | 21271755-C-A | ** | ||||||
23128102-C-G | 20966216-C-G | ** | ||||||
24433351-C-A | 22287204-C-A | ** | ||||||
18873393-CT-C | 16761513-CT-C | ** | ||||||
8718255-A-C | 8850214-A-C | ** | ||||||
17737998-C-A | 15626118-C-A | ** | ||||||
4374864-C-A | 4506823-C-A | ** | ||||||
13871500-C-A | 11750794-C-A | ** | ||||||
22521247-C-A | 20359361-C-A | ** | ||||||
20641663-T-A | 18479777-T-A | P4_Prx | ** | |||||
13421161-C-A | 11265485-C-A | ** | ||||||
19069440-C-A | 16957560-C-A | ** | ||||||
3727814-C-A | 3859773-C-A | ** | ||||||
21603872-C-A | 19441986-C-A | ** | ||||||
56849385-G-T | ** | |||||||
16790943-C-A | 14679063-C-A | ** | ||||||
23412519-C-A | 21250633-C-A | ** | ||||||
4983804-T-G | 5115763-T-G | ** | ||||||
17863331-C-A | 15751451-C-A | ** | ||||||
27967298-C-A | 25821151-C-A | P1_Y2 | ** | |||||
7733575-C-A | 7865534-C-A | ** | ||||||
7825689-C-A | 7957648-C-A | ** | ||||||
3389089-C-A | 3521048-C-A | ** | ||||||
15739989-C-A | 13628109-C-A | ** | ||||||
2821278-G-A | 2953237-G-A | ** | ||||||
2845796-T-G | 2977755-T-G | ** | ||||||
2881375-ATGTGGATTT-A | 3013334-ATGTGGATTT-A | ** | ||||||
2901470-C-A | 3033429-C-A | ** | ||||||
2906057-C-A | 3038016-C-A | ** | ||||||
2979449-TTTAAAACA-T | 3111408-TTTAAAACA-T | ** | ||||||
2981319-C-A | 3113278-C-A | ** | ||||||
3032386-A-T | 3164345-A-T | ** | ||||||
3173529-C-A | 3305488-C-A | ** | ||||||
3184746-G-T | 3316705-G-T | ** | ||||||
3347435-C-A | 3479394-C-A | ** | ||||||
3361627-C-A | 3493586-C-A | ** | ||||||
3367000-C-A | 3498959-C-A | ** | ||||||
3388630-C-A | 3520589-C-A | ** | ||||||
3403447-T-C | 3535406-T-C | ** | ||||||
3469993-G-T | 3601952-G-T | ** | ||||||
3588791-C-A | 3720750-C-A | ** | ||||||
3589364-G-T | 3721323-G-T | ** | ||||||
3609633-C-A | 3741592-C-A | ** | ||||||
3627919-G-T | 3759878-G-T | ** | ||||||
3680836-C-A | 3812795-C-A | ** | ||||||
3813980-GGGAAT-G | 3945939-GGGAAT-G | ** | ||||||
3849581-C-A | 3981540-C-A | ** | ||||||
3951313-C-A | 4083272-C-A | ** | ||||||
3952327-C-A | 4084286-C-A | ** | ||||||
4014662-G-A | 4146621-G-A | ** | ||||||
4014723-C-A | 4146682-C-A | ** | ||||||
4108313-A-C | 4240272-A-C | ** | ||||||
4326088-C-A | 4458047-C-A | ** | ||||||
4382542-C-A | 4514501-C-A | ** | ||||||
4470617-C-A | 4602576-C-A | ** | ||||||
4584018-T-C | 4715977-T-C | ** | ||||||
4720739-G-T | 4852698-G-T | ** | ||||||
4872685-C-A | 5004644-C-A | ** | ||||||
4983800-G-C | 5115759-G-C | ** | ||||||
5191233-T-TC | 5323192-T-TC | ** | ||||||
5231813-A-G | 5363772-A-G | ** | ||||||
5393257-G-A | 5525216-G-A | ** | ||||||
5400695-GT-G | 5532654-GT-G | 9×T | ** | |||||
5426988-G-T | 5558947-G-T | ** | ||||||
5693678-C-T | 5825637-C-T | ** | ||||||
5795180-C-A | 5927139-C-A | ** | ||||||
5887247-G-A | 6019206-G-A | ** | ||||||
6041107-T-A | 6173066-T-A | ** | ||||||
6078863-G-T | 6210822-G-T | ** | ||||||
6103601-C-A | 6235560-C-A | ** | ||||||
6360979-G-T | 6492938-G-T | ** | ||||||
6365037-G-T | 6496996-G-T | ** | ||||||
6418229-T-C | 6550188-T-C | ** | ||||||
6540992-T-G | 6672951-T-G | ** | ||||||
6596886-T-C | 6728845-T-C | ** | ||||||
6731473-C-A | 6863432-C-A | ** | ||||||
6774919-A-G | 6906878-A-G | ** | ||||||
6807397-C-A | 6939356-C-A | ** | ||||||
6826049-A-T | 6958008-A-T | ** | ||||||
6844083-C-A | 6976042-C-A | ** | ||||||
6854449-TC-T | 6986408-TC-T | ** | ||||||
6916924-A-ATTT | 7048883-A-ATTT | 11×T | ** | |||||
6949270-C-A | 7081229-C-A | ** | ||||||
6955727-C-A | 7087686-C-A | ** | ||||||
7011338-C-A | 7143297-C-A | ** | ||||||
7101924-C-A | 7233883-C-A | ** | ||||||
7104188-C-G | 7236147-C-G | ** | ||||||
7190007-T-C | 7321966-T-C | ** | ||||||
7200423-A-T | 7332382-A-T | ** | ||||||
7233677-C-A | 7365636-C-A | ** | ||||||
7240418-C-A | 7372377-C-A | ** | ||||||
7281661-C-A | 7413620-C-A | ** | ||||||
7287778-A-C | 7419737-A-C | ** | ||||||
7299527-G-T | 7431486-G-T | ** | ||||||
7397535-C-A | 7529494-C-A | ** | ||||||
7413496-C-A | 7545455-C-A | ** | ||||||
7434160-C-A | 7566119-C-A | ** | ||||||
7541608-T-A | 7673567-T-A | ** | ||||||
7572662-C-A | 7704621-C-A | ** | ||||||
7603276-C-A | 7735235-C-A | ** | ||||||
7663524-C-A | 7795483-C-A | ** | ||||||
7707677-C-A | 7839636-C-A | ** | ||||||
7899324-TA-T | 8031283-TA-T | ** | ||||||
8171685-A-G | 8303644-A-G | ** | ||||||
8191635-A-T | 8323594-A-T | ** | ||||||
8326978-C-A | 8458937-C-A | ** | ||||||
8355575-C-A | 8487534-C-A | ** | ||||||
8396609-C-A | 8528568-C-A | ** | ||||||
8414953-G-T | 8546912-G-T | ** | ||||||
8435133-C-A | 8567092-C-A | ** | ||||||
8514279-T-C | 8646238-T-C | ** | ||||||
8522841-C-A | 8654800-C-A | ** | ||||||
8571145-T-G | 8703104-T-G | ** | ||||||
8581990-C-A | 8713949-C-A | ** | ||||||
8592791-C-A | 8724750-C-A | ** | ||||||
8606877-G-GCA | 8738836-G-GCA | ** | ||||||
8671973-G-T | 8803932-G-T | ** | ||||||
8718246-G-C | 8850205-G-C | ** | ||||||
8720763-G-T | 8852722-G-T | ** | ||||||
8735051-G-A | 8867010-G-A | ** | ||||||
8736149-A-G | 8868108-A-G | ** | ||||||
8766289-G-T | 8898248-G-T | ** | ||||||
8786542-C-A | 8918501-C-A | ** | ||||||
8860817-C-A | 8992776-C-A | ** | ||||||
8890651-G-A | 9022610-G-A | ** | ||||||
8969184-G-T | 9131575-G-T | ** | ||||||
9063193-G-T | 9225584-G-T | ** | ||||||
9088899-C-A | 9251290-C-A | ** | ||||||
9094243-G-C | 9256634-G-C | ** | ||||||
9130372-C-A | 9292763-C-A | ** | ||||||
9384504-G-A | 9546895-G-A | ** | ||||||
9385523-C-G | 9547914-C-G | ** | ||||||
9624821-G-C | 9787212-G-C | IR3_Prx | ** | |||||
9815769-G-C | 9978160-G-C | ** | ||||||
9907590-G-T | 10069981-G-T | ** | ||||||
9923323-G-T | 10085714-G-T | ** | ||||||
9935754-C-A | 10098145-C-A | ** | ||||||
9935756-G-C | 10098147-G-C | ** | ||||||
9983809-T-A | 10146200-T-A | ** | ||||||
10082151-G-T | 10244542-G-T | ** | ||||||
10622883-G-T | FT427897 | ** | ||||||
10664792-T-A | ** | |||||||
10664842-T-A | ** | |||||||
10747049-A-ATTCCG | ** | |||||||
10845786-C-A | ** | |||||||
10851037-C-G | ** | |||||||
10857848-C-A | ** | |||||||
10976720-C-T | ** | |||||||
10976722-A-C | ** | |||||||
10976761-T-C | ** | |||||||
11020810-C-G | ** | |||||||
13195706-C-G | 11040030-C-G | ** | ||||||
13216781-T-G | 11061105-T-G | ** | ||||||
13240495-C-A | 11084819-C-A | ** | ||||||
13324289-C-A | 11168613-C-A | ** | ||||||
13390597-G-C | 11234921-G-C | ** | ||||||
13452704-TCCTCTC-T | 11297028-TCCTCTC-T | ** | ||||||
13465545-A-C | 11309869-A-C | ** | ||||||
13473865-C-A | 11318189-C-A | ** | ||||||
13487483-C-A | 11331807-C-A | ** | ||||||
13521635-T-A | 11365959-T-A | ** | ||||||
13567652-C-A | 11411976-C-A | ** | ||||||
13600688-C-A | 11445012-C-A | ** | ||||||
13653463-A-G | 11497787-A-G | ** | ||||||
11668515-A-C | ** | |||||||
13801506-A-T | 11680800-A-T | ** | ||||||
13803497-C-G | 11682791-C-G | ** | ||||||
13805307-G-A | 11684601-G-A | ** | ||||||
13808438-C-A | 11687732-C-A | ** | ||||||
13874243-T-G | 11753537-T-G | ** | ||||||
13909404-C-T | 11788698-C-T | ** | ||||||
13919715-G-T | 11799009-G-T | ** | ||||||
13921049-C-G | 11800343-C-G | ** | ||||||
13937611-C-A | 11816905-C-A | ** | ||||||
13961266-C-A | 11840560-C-A | ** | ||||||
14002192-C-A | 11881486-C-A | ** | ||||||
14039947-C-A | 11919241-C-A | ** | ||||||
14041042-T-C | 11920336-T-C | ** | ||||||
14044370-C-T | 11923664-C-T | ** | ||||||
14100462-A-G | 11979756-A-G | ** | ||||||
14143053-C-T | 12022347-C-T | ** | ||||||
14215655-A-G | 12094949-A-G | ** | ||||||
14356684-C-A | 12235979-C-A | ** | ||||||
14356890-C-CTT | 12236185-C-CTT | 17×T | ** | |||||
14361489-T-C | 12240784-T-C | FT279339 | ** | |||||
14380686-C-A | 12259982-C-A | ** | ||||||
14394045-T-C | 12273341-T-C | ** | ||||||
14425215-G-A | 12304490-G-A | ** | ||||||
14425218-AG-A | 12304493-AG-A | ** | ||||||
14460011-C-A | 12339284-C-A | ** | ||||||
14506137-C-A | 12394342-C-A | ** | ||||||
14556943-C-A | 12445144-C-A | ** | ||||||
14568328-G-A | 12456528-G-A | ** | ||||||
14578452-G-A | 12466652-G-A | ** | ||||||
14594323-GC-G | 12482523-GC-G | ** | ||||||
14596053-T-A | 12484253-T-A | ** | ||||||
14598604-C-A | 12486804-C-A | ** | ||||||
14667764-G-A | 12555829-G-A | ** | ||||||
14720944-C-A | 12609012-C-A | ** | ||||||
14730131-G-C | 12618199-G-C | ** | ||||||
14730143-G-A | 12618211-G-A | ** | ||||||
14755470-T-C | 12643539-T-C | ** | ||||||
14776868-A-T | 12664937-A-T | ** | ||||||
15178263-G-C | 13066349-G-C | ** | ||||||
15230158-C-T | 13118244-C-T | ** | ||||||
15260707-TTTG-T | 13148791-TTTG-T | ** | ||||||
15426266-C-A | 13314386-C-A | ** | ||||||
15450046-C-T | 13338166-C-T | ** | ||||||
15462799-G-A | 13350919-G-A | ** | ||||||
15508907-C-A | 13397027-C-A | ** | ||||||
15606295-C-A | 13494415-C-A | ** | ||||||
15646280-G-T | 13534400-G-T | ** | ||||||
15646303-G-T | 13534423-G-T | ** | ||||||
15650459-C-A | 13538579-C-A | ** | ||||||
15726398-C-A | 13614518-C-A | ** | ||||||
15786719-C-A | 13674839-C-A | ** | ||||||
15791665-C-A | 13679785-C-A | ** | ||||||
15793408-C-A | 13681528-C-A | ** | ||||||
15942829-T-C | 13830949-T-C | ** | ||||||
15944911-C-G | 13833031-C-G | ** | ||||||
15964769-T-G | 13852889-T-G | ** | ||||||
16027846-C-G | 13915966-C-G | ** | ||||||
16071982-A-G | 13960102-A-G | ** | ||||||
16179212-C-A | 14067332-C-A | ** | ||||||
16240191-T-C | 14128311-T-C | ** | ||||||
16244349-C-CAAA | 14132469-C-CAAA | ** | ||||||
16246394-C-T | 14134514-C-T | FT180619 | ** | |||||
16320183-A-G | 14208303-A-G | ** | ||||||
16424174-C-A | 14312294-C-A | ** | ||||||
16519599-C-A | 14407719-C-A | ** | ||||||
16724919-G-T | 14613039-G-T | ** | ||||||
16734360-C-A | 14622480-C-A | ** | ||||||
16929476-A-T | 14817596-A-T | ** | ||||||
16961490-C-T | 14849610-C-T | ** | ||||||
17061384-C-A | 14949504-C-A | ** | ||||||
17066124-C-A | 14954244-C-A | ** | ||||||
17085627-G-T | 14973747-G-T | ** | ||||||
17085822-C-T | 14973942-C-T | ** | ||||||
17103272-T-C | 14991392-T-C | ** | ||||||
17121509-C-A | 15009629-C-A | ** | ||||||
17142202-C-A | 15030322-C-A | FT105425 | ** | |||||
17153232-C-A | 15041352-C-A | ** | ||||||
17205975-C-T | 15094095-C-T | ** | ||||||
17243050-C-A | 15131170-C-A | FT385203 | ** | |||||
17296043-C-A | 15184163-C-A | ** | ||||||
17315121-T-G | 15203241-T-G | ** | ||||||
17317282-C-A | 15205402-C-A | ** | ||||||
17366825-GC-G | 15254945-GC-G | ** | ||||||
17412173-C-A | 15300293-C-A | ** | ||||||
17444872-C-A | 15332992-C-A | ** | ||||||
17480642-C-A | 15368762-C-A | ** | ||||||
17624314-T-G | 15512434-T-G | ** | ||||||
17632588-T-TA | 15520708-T-TA | ** | ||||||
17682444-A-G | 15570564-A-G | ** | ||||||
17848671-T-A | 15736791-T-A | ** | ||||||
17861428-T-C | 15749548-T-C | ** | ||||||
17874154-TAACAA-T | 15762274-TAACAA-T | ** | ||||||
17924786-C-A | 15812906-C-A | ** | ||||||
17929890-C-A | 15818010-C-A | ** | ||||||
17969147-G-A | 15857267-G-A | ** | ||||||
17970116-C-A | 15858236-C-A | ** | ||||||
18078207-C-A | 15966327-C-A | ** | ||||||
18137245-G-T | 16025365-G-T | ** | ||||||
18205045-G-A | 16093165-G-A | ** | ||||||
18384462-C-A | 16272582-C-A | P6_Gap | ** | |||||
18396629-G-T | 16284749-G-T | P6_Gap | ** | |||||
18442577-G-T | 16330697-G-T | P6_Dst | ** | |||||
18558124-T-C | 16446244-T-C | ** | ||||||
18629553-C-A | 16517673-C-A | FT50975 | ** | |||||
18640691-C-A | 16528811-C-A | ** | ||||||
18732751-C-A | 16620871-C-A | ** | ||||||
18783873-C-A | 16671993-C-A | ** | ||||||
18824441-C-A | 16712561-C-A | ** | ||||||
18871824-G-T | 16759944-G-T | ** | ||||||
18982475-C-A | 16870595-C-A | ** | ||||||
19051889-A-G | 16940009-A-G | ** | ||||||
19058130-C-A | 16946250-C-A | ** | ||||||
19078971-AC-A | 16967091-AC-A | ** | ||||||
19104684-A-G | 16992804-A-G | ** | ||||||
19189989-C-A | 17078109-C-A | ** | ||||||
19296753-T-A | 17184873-T-A | ** | ||||||
19409168-C-A | 17297288-C-A | ** | ||||||
19438322-G-T | 17326442-G-T | ** | ||||||
19485208-C-A | 17373328-C-A | ** | ||||||
19497988-A-G | 17386108-A-G | ** | ||||||
19575795-A-T | 17463915-A-T | P5_Prx | ** | |||||
20379895-C-T | 18218009-C-T | P5_Dst | ** | |||||
20409687-G-T | 18247801-G-T | P5_Dst | ** | |||||
20871683-T-C | 18709797-T-C | P4_Dst | ** | |||||
21076030-GA-G | 18914144-GA-G | ** | ||||||
21134215-G-T | 18972329-G-T | ** | ||||||
21136583-C-G | 18974697-C-G | ** | ||||||
21143947-A-T | 18982061-A-T | ** | ||||||
21184456-C-A | 19022570-C-A | ** | ||||||
21202959-C-A | 19041073-C-A | ** | ||||||
21209956-GT-G | 19048070-GT-G | ** | ||||||
21262928-G-C | 19101042-G-C | ** | ||||||
21306071-A-T | 19144185-A-T | ** | ||||||
21340473-C-A | 19178587-C-A | ** | ||||||
21387290-CATGAAGACTTTGACCATGCCT-C | 19225404-CATGAAGACTTTGACCATGCCT-C | ** | ||||||
21422302-C-A | 19260416-C-A | ** | ||||||
21584214-G-A | 19422328-G-A | ** | ||||||
21624462-T-C | 19462576-T-C | ** | ||||||
21666788-G-T | 19504902-G-T | ** | ||||||
21768750-C-A | 19606864-C-A | ** | ||||||
21771730-G-A | 19609844-G-A | ** | ||||||
21789182-T-A | 19627296-T-A | ** | ||||||
21846452-CTTTTTTTTTTTTTT-C | 19684566-CTTTTTTTTTTTTTT-C | 26×T | ** | |||||
21904536-C-A | 19742650-C-A | ** | ||||||
21911957-C-T | 19750071-C-T | ** | ||||||
22028812-G-A | 19866926-G-A | ** | ||||||
22075758-C-A | 19913872-C-A | ** | ||||||
22099846-A-AT | 19937960-A-AT | ** | ||||||
22147437-C-A | 19985551-C-A | ** | ||||||
22191600-T-C | 20029714-T-C | ** | ||||||
22283796-T-C | 20121910-T-C | DYZ19 | ** | |||||
22506924-A-G | 20345038-A-G | DYZ19 | ** | |||||
22535908-A-G | 20374022-A-G | ** | ||||||
22650886-G-A | 20489000-G-A | ** | ||||||
22658867-C-A | 20496981-C-A | ** | ||||||
22814975-A-T | 20653089-A-T | ** | ||||||
22849554-C-A | 20687668-C-A | ** | ||||||
22893066-C-A | 20731180-C-A | ** | ||||||
22909343-C-A | 20747457-C-A | ** | ||||||
22963891-C-A | 20802005-C-A | ** | ||||||
22997908-G-T | 20836022-G-T | ** | ||||||
23097107-G-T | 20935221-G-T | ** | ||||||
23204242-T-C | 21042356-T-C | ** | ||||||
23293521-C-A | 21131635-C-A | ** | ||||||
23380313-A-G | 21218427-A-G | ** | ||||||
23475378-C-T | 21313492-C-T | ** | ||||||
23596877-C-A | 21434991-C-A | ** | ||||||
23627403-G-T | 21465517-G-T | ** | ||||||
23766738-T-A | 21604852-T-A | ** | ||||||
23766790-G-T | 21604904-G-T | ** | ||||||
23770126-G-T | 21608240-G-T | ** | ||||||
23813873-G-A | 21651987-G-A | ** | ||||||
23869770-C-A | 21707884-C-A | ** | ||||||
24205970-A-G | 22059823-A-G | P3_b1 | ** | |||||
24469760-T-C | 22323613-T-C | ** | ||||||
25881622-C-A | 23735475-C-A | P1_Y1 | ** | |||||
25974410-C-T | 23828263-C-T | P1_Y1 | ** | |||||
26099890-A-T | 23953743-A-T | P1_Y1 | ** | |||||
26152096-T-C | 24005949-T-C | P1_Y1 | ** | |||||
26152097-C-CTT | 24005950-C-CTT | P1_Y1 | 17×CCTT | ** | ||||
26248261-A-T | 24102114-A-T | P1_Y1 | ** | |||||
27356464-G-A | 25210317-G-A | P1_g3 | ** | |||||
27737603-A-ATC | 25591456-A-ATC | P1_Y2 | ** | |||||
27997988-G-T | 25851841-G-T | P1_Y2 | ** | |||||
28485704-T-A | 26339557-T-A | ** | ||||||
28485762-A-C | 26339615-A-C | ** | ||||||
28492045-C-A | 26345898-C-A | ** | ||||||
28501454-TGTAGTTTAC-T | 26355307-TGTAGTTTAC-T | ** | ||||||
28533923-C-A | 26387776-C-A | ** | ||||||
28566832-C-A | 26420685-C-A | ** | ||||||
28610088-A-T | 26463941-A-T | ** | ||||||
28661379-C-A | 26515232-C-A | ** | ||||||
28700005-C-A | 26553858-C-A | ** | ||||||
28707396-C-A | 26561249-C-A | ** | ||||||
28805774-A-T | 26659627-A-T | ** | ||||||
56828320-A-C | ** | |||||||
56858043-C-A | ** | |||||||
56859768-A-G | ** | |||||||
13454268-A-G | 11298592-A-G | *** | ||||||
13455712-T-G | 11300036-T-G | FGC22229 | *** | |||||
14406344-T-C | 12285641-T-C | PF4697 CTS2649 | *** | |||||
17949629-C-A | 15837749-C-A | *** | ||||||
22511672-T-C | 20349786-T-C | DYZ19 | *** | |||||
23234708-CTTCTTTCT-C,CTTCT | 21072822-CTTCTTTCT-C,CTTCT | 17×TTCT | *** | |||||
10748058-T-C | *** | |||||||
15221460-C-A | 13109546-C-A | *** | ||||||
14656152-AAC-A,AAA | 12544217-AAC-A,AAA | *** | ||||||
21142834-CAAAA-C | 18980948-CAAAA-C | 16×A | *** | |||||
6402496-A-C | 6534455-A-C | FT245251 | *** | |||||
19302709-G-A | 17190829-G-A | *** | ||||||
8085760-A-C | 8217719-A-C | *** | ||||||
13453183-C-G | 11297507-C-G | *** | ||||||
15725755-C-A | 13613875-C-A | *** | ||||||
23554935-C-A | 21393049-C-A | *** | ||||||
13488649-GT-A,G | 11332973-GT-A,G | *** | ||||||
13909732-C-A | 11789026-C-A | *** | ||||||
16554862-C-A | 14442982-C-A | *** | ||||||
11666025-G-A | BY23397 | FT191143 | *** | |||||
17348297-CAAA-C | 15236417-CAAA-C | 17×A | *** | |||||
8108356-CAA-C,CA | 8240315-CAA-C,CA | 15×A | *** | |||||
23281389-C-A | 21119503-C-A | *** | ||||||
14596965-C-A | 12485165-C-A | *** | ||||||
14108504-C-A | 11987798-C-A | *** | ||||||
8670755-C-A | 8802714-C-A | *** | ||||||
13470477-G-C | 11314801-G-C | *** | ||||||
14696497-C-A | 12584563-C-A | *** | ||||||
14424239-C-A | 12303514-C-A | *** | ||||||
15180263-G-T | 13068349-G-T | *** | ||||||
18714008-C-A | 16602128-C-A | *** | ||||||
13459337-A-C | 11303661-A-C | *** | ||||||
2797343-C-A | 2929302-C-A | *** | ||||||
2872431-C-A | 3004390-C-A | *** | ||||||
3275234-A-G | 3407193-A-G | *** | ||||||
4113193-T-C | 4245152-T-C | *** | ||||||
4788529-A-G | 4920488-A-G | *** | ||||||
5409856-C-A | 5541815-C-A | *** | ||||||
6791601-C-T | 6923560-C-T | *** | ||||||
6814822-C-A | 6946781-C-A | *** | ||||||
6957509-C-A | 7089468-C-A | *** | ||||||
7266335-C-A | 7398294-C-A | *** | ||||||
7354810-G-A | 7486769-G-A | *** | ||||||
7468120-G-T | 7600079-G-T | IR1_L | *** | |||||
7637976-A-T | 7769935-A-T | *** | ||||||
7736167-G-GA | 7868126-G-GA | 9×A | *** | |||||
8048575-AGAGAGAGG-A | 8180534-AGAGAGAGG-A | *** | ||||||
8190024-C-A | 8321983-C-A | *** | ||||||
8470294-T-A | 8602253-T-A | *** | ||||||
8471860-C-A | 8603819-C-A | *** | ||||||
8508494-C-A | 8640453-C-A | *** | ||||||
8533702-C-A | 8665661-C-A | *** | ||||||
8537553-C-T | 8669512-C-T | *** | ||||||
8605302-C-A | 8737261-C-A | *** | ||||||
8643936-G-T | 8775895-G-T | *** | ||||||
8649408-G-T | 8781367-G-T | BY74929 | *** | |||||
8665574-AT-A | 8797533-AT-A | *** | ||||||
8790088-C-A | 8922047-C-A | *** | ||||||
8843730-T-C | 8975689-T-C | *** | ||||||
8845967-C-A | 8977926-C-A | *** | ||||||
9014190-T-A | 9176581-T-A | *** | ||||||
9457066-C-A | 9619457-C-A | *** | ||||||
9735389-T-C | 9897780-T-C | IR3_Prx | *** | |||||
9857358-A-C | 10019749-A-C | *** | ||||||
9872042-C-A | 10034433-C-A | *** | ||||||
9874385-C-A | 10036776-C-A | *** | ||||||
10060177-C-A | 10222568-C-A | *** | ||||||
10927594-C-A | *** | |||||||
11000037-T-C | *** | |||||||
13208288-C-A | 11052612-C-A | *** | ||||||
13451972-C-A | 11296296-C-A | *** | ||||||
13452093-C-A | 11296417-C-A | *** | ||||||
13458736-C-A | 11303060-C-A | *** | ||||||
13468362-C-T | 11312686-C-T | *** | ||||||
13470474-G-C | 11314798-G-C | *** | ||||||
13475858-CCA-C | 11320182-CCA-C | *** | ||||||
13488626-TT-C,CT | 11332950-TT-C,CT | *** | ||||||
13575730-C-A | 11420054-C-A | *** | ||||||
13596655-C-A | 11440979-C-A | *** | ||||||
11668528-GT-G | *** | |||||||
11668532-A-ATG | *** | |||||||
13817403-G-A | 11696697-G-A | FT373058 | *** | |||||
13817406-T-C | 11696700-T-C | FT29517 | *** | |||||
13845720-C-A | 11725014-C-A | *** | ||||||
14008978-C-A | 11888272-C-A | *** | ||||||
14036353-C-A | 11915647-C-A | *** | ||||||
14069838-T-A | 11949132-T-A | *** | ||||||
14106366-ACAAAGTCTT-A | 11985660-ACAAAGTCTT-A | *** | ||||||
14141891-C-A | 12021185-C-A | *** | ||||||
14175253-C-A | 12054547-C-A | *** | ||||||
14210256-G-A | 12089550-G-A | *** | ||||||
14230839-C-A | 12110133-C-A | *** | ||||||
14432495-A-T | 12311768-A-T | *** | ||||||
14439721-C-A | 12318994-C-A | *** | ||||||
14538292-C-A | 12426493-C-A | *** | ||||||
14611411-C-G | 12499617-C-G | *** | ||||||
14939686-T-G | 12827760-T-G | *** | ||||||
14946492-C-A | 12834566-C-A | *** | ||||||
14992004-C-A | 12880089-C-A | *** | ||||||
15080472-C-A | 12968562-C-A | *** | ||||||
15177079-T-C | 13065165-T-C | *** | ||||||
15388504-A-G | 13276624-A-G | *** | ||||||
15552414-C-A | 13440534-C-A | *** | ||||||
15587822-C-A | 13475942-C-A | *** | ||||||
15634773-A-G | 13522893-A-G | *** | ||||||
15650081-C-A | 13538201-C-A | *** | ||||||
15651574-A-G | 13539694-A-G | *** | ||||||
15739239-C-A | 13627359-C-A | *** | ||||||
15917719-C-A | 13805839-C-A | *** | ||||||
15935628-G-T | 13823748-G-T | *** | ||||||
15968078-C-A | 13856198-C-A | *** | ||||||
16132705-C-A | 14020825-C-A | *** | ||||||
16270253-C-A | 14158373-C-A | *** | ||||||
16359780-C-A | 14247900-C-A | *** | ||||||
16641395-C-A | 14529515-C-A | *** | ||||||
16694870-C-A | 14582990-C-A | FGC40989 | *** | |||||
16869713-C-A | 14757833-C-A | *** | ||||||
17093889-C-T | 14982009-C-T | *** | ||||||
17101344-C-A | 14989464-C-A | *** | ||||||
17103216-G-T | 14991336-G-T | *** | ||||||
17126347-A-G | 15014467-A-G | *** | ||||||
17157357-CATAGG-C | 15045477-CATAGG-C | *** | ||||||
17199080-C-A | 15087200-C-A | *** | ||||||
17416958-G-T | 15305078-G-T | *** | ||||||
17517046-C-A | 15405166-C-A | *** | ||||||
17632700-G-A | 15520820-G-A | FT343625 | *** | |||||
17633294-C-A | 15521414-C-A | *** | ||||||
17662076-A-T | 15550196-A-T | *** | ||||||
17736389-C-A | 15624509-C-A | *** | ||||||
17927334-C-A | 15815454-C-A | *** | ||||||
18024366-C-A | 15912486-C-A | *** | ||||||
18100651-C-A | 15988771-C-A | *** | ||||||
18406454-C-A | 16294574-C-A | P6_Gap | *** | |||||
18592043-C-A | 16480163-C-A | *** | ||||||
18670787-C-A | 16558907-C-A | *** | ||||||
18886780-C-A | 16774900-C-A | *** | ||||||
18910900-A-G | 16799020-A-G | *** | ||||||
18960102-C-T | 16848222-C-T | *** | ||||||
18960112-C-A | 16848232-C-A | *** | ||||||
19410352-C-A | 17298472-C-A | *** | ||||||
20554543-T-C | 18392657-T-C | P5_Dst | *** | |||||
21102211-C-A | 18940325-C-A | *** | ||||||
21132233-C-A | 18970347-C-A | *** | ||||||
21211060-G-T | 19049174-G-T | *** | ||||||
21615795-A-G | 19453909-A-G | *** | ||||||
21762015-C-T | 19600129-C-T | *** | ||||||
22002468-C-A | 19840582-C-A | *** | ||||||
22097518-AACACAC-A | 19935632-AACACAC-A | 9×AC | *** | |||||
22137233-G-A | 19975347-G-A | *** | ||||||
22712846-C-A | 20550960-C-A | *** | ||||||
22842904-CTTCA-C | 20681018-CTTCA-C | *** | ||||||
23188825-A-G | 21026939-A-G | *** | ||||||
23241915-C-A | 21080029-C-A | *** | ||||||
23309197-C-A | 21147311-C-A | *** | ||||||
23389531-CTTTTTTT-C | 21227645-CTTTTTTT-C | 18×T | *** | |||||
23427056-C-A | 21265170-C-A | *** | ||||||
23567999-G-T | 21406113-G-T | *** | ||||||
23975648-C-A | 21829501-C-A | *** | ||||||
23992126-G-T | 21845979-G-T | *** | ||||||
24450038-C-A | 22303891-C-A | *** | ||||||
24536494-C-T | 22390347-C-T | P3_t2 | *** | |||||
24636162-C-A | 22490015-C-A | P3_t2 | *** | |||||
28469183-C-A | 26323036-C-A | *** | ||||||
56827415-TCCATCCC-T | *** | |||||||
56834576-TCCACTCCATTC-T,TCCACCCTATTCCAATC | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.