Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > 7331194-A-AT > BY39804

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
855374
26218294-A-G 24072147-A-G P1_Y1 A*
22274349-C-T 20112463-C-T DYZ19 A*
22313759-C-T 20151873-C-T DYZ19 A*
23174389-A-G 21012503-A-G YA*
26108074-C-T 23961927-C-T P1_Y1 A*
15658259-T-TAC 13546379-T-TAC 11×ACA*
19760974-A-G 17649094-A-G P5_Prx A*
19826609-A-G 17714729-A-G P5_Prx A*
19914936-A-G 17803056-A-G P5_Prx A*
9458775-A-G 9621166-A-G BY164420 YY+
16473499-A-G 14361619-A-G BY163704 YY+
21366452-A-C 19204566-A-C BY163958 YY+
21741125-C-T 19579239-C-T BY163988 YY+
16961576-A-G 14849696-A-G BY163740 YY+
17362396-GCATA-G 15250516-GCATA-G +
21963335-T-A 19801449-T-A BY164005 YY+
6946671-G-A 7078630-G-A BY164223 YY+
23089089-T-C 20927203-T-C BY164067 YY+
22474323-A-T 20312437-A-T BY155316 DYZ19 +
22116369-G-A 19954483-G-A BY164014 YY+
16213691-G-T 14101811-G-T BY163692 YY+
22270348-G-C 20108462-G-C BY42334 DYZ19 +
19558615-T-G 17446735-T-G BY163928 Y+
14711241-AT-A 12599308-AT-A +
6136839-C-A 6268798-C-A BY164189 +
8467002-G-C 8598961-G-C YY+
15752772-A-T 13640892-A-T BY163664 YY+
2846074-A-G 2978033-A-G BY164168 YY+
7907777-T-C 8039736-T-C BY42333 YY+
22275346-G-A 20113460-G-A DYZ19 *
19358849-TTCTA-T 17246969-TTCTA-T 10×TCTA*
19791558-G-A 17679678-G-A P5_Prx *
15658259-T-C 13546379-T-C BY25489 YY11×AC*
22225693-C-G 20063807-C-G DYZ19 *
10631254-C-T **
10631280-C-CTGTCAGATTG **
10669451-T-TC **
10631247-TGCC-T **
10631295-C-A **
10631239-C-T **
10631291-A-T **
16050909-C-CCTTT 13939029-C-CCTTT 11×CTTT**
10671031-C-T **
10949098-C-T **
13487582-C-G 11331906-C-G **
13485871-G-A 11330195-G-A **
13394819-AGAGGTGTGAAGTGGGAAATCGGGGGGG-A 11239143-AGAGGTGTGAAGTGGGAAATCGGGGGGG-A **
13233078-C-A 11077402-C-A **
13215610-C-A 11059934-C-A **
10983335-C-A **
10958289-C-A **
10926658-C-CA **
10682487-C-T **
10926641-A-ACTGTT **
10849507-C-A **
10816509-T-A **
10808606-C-G **
10785283-C-CCCTGCACTCGCGTTG **
10748091-C-A **
9979013-A-C 10141404-A-C **
10687106-G-T **
7619119-C-A 7751078-C-A **
9963453-T-C 10125844-T-C **
6247977-C-G 6379936-C-G IR3_Dst **
13227783-C-A 11072107-C-A **
11007944-C-A **
10631271-A-T **
10808593-C-G **
4957929-G-T 5089888-G-T **
25990699-C-T 23844552-C-T P1_Y1 **
3148663-C-A 3280622-C-A **
4329090-G-T 4461049-G-T **
4353742-C-T 4485701-C-T **
4464836-G-C 4596795-G-C **
13194867-T-C 11039191-T-C **
5851161-G-A 5983120-G-A **
6147578-A-G 6279537-A-G IR3_Dst **
6247952-GC-G 6379911-GC-G IR3_Dst **
6247980-A-T 6379939-A-T IR3_Dst **
9899481-C-A 10061872-C-A **
7172339-C-T 7304298-C-T **
9178490-C-A 9340881-C-A **
8661250-G-A 8793209-G-A **
7894524-C-A 8026483-C-A **
7758151-G-A 7890110-G-A **
7753303-C-A 7885262-C-A **
13704352-T-G 11548676-T-G **
7083762-CTAATTTTTGTATTTTTAGTAGA-C 7215721-CTAATTTTTGTATTTTTAGTAGA-C **
6247981-CAGG-C 6379940-CAGG-C IR3_Dst **
7013641-C-A 7145600-C-A **
6814585-C-A 6946544-C-A **
6637117-C-A 6769076-C-A **
6509758-C-G 6641717-C-G **
6436604-G-T 6568563-G-T **
6247988-A-G 6379947-A-G IR3_Dst **
13489334-A-C 11333658-A-C **
15975660-T-C 13863780-T-C **
13704371-A-T 11548695-A-T **
23802082-C-CAA 21640196-C-CAA 24×A**
20497499-C-A 18335613-C-A P5_Dst **
20707570-T-C 18545684-T-C P4_Prx **
21265185-ATACAGCATTTCATAGGAAC-A 19103299-ATACAGCATTTCATAGGAAC-A **
21748775-C-A 19586889-C-A **
22289995-T-C 20128109-T-C DYZ19 **
23104399-T-A 20942513-T-A **
23275926-C-A 21114040-C-A **
23290371-C-A 21128485-C-A **
23311322-G-T 21149436-G-T **
23442422-T-G 21280536-T-G **
23442449-C-T 21280563-C-T **
23442461-A-G 21280575-A-G **
23442472-G-A 21280586-G-A **
23442479-C-A 21280593-C-A **
23831341-C-A 21669455-C-A **
20213012-TTC-T 18051126-TTC-T P5_Dst **
27719051-T-TGCTTGCTTGCTG 25572904-T-TGCTTGCTTGCTG P1_Y2 **
28800754-G-A 26654607-G-A **
28779100-C-A 26632953-C-A **
28733555-C-A 26587408-C-A **
28726634-A-G 26580487-A-G **
28496848-C-A 26350701-C-A **
27982170-ATTATTAT-A 25836023-ATTATTAT-A P1_Y2 **
27447486-GTGT-G 25301339-GTGT-G P1_Y2 **
24003191-C-A 21857044-C-A **
27022178-ACCTT-A 24876031-ACCTT-A P1_r4 **
26440535-T-A 24294388-T-A P1_Y1 **
26262429-G-T 24116282-G-T P1_Y1 **
25534196-G-T 23388049-G-T P1_gr1 **
25200855-GAA-G 23054708-GAA-G g1 **
24416907-A-G 22270760-A-G **
20231522-A-AGAG 18069636-A-AGAG P5_Dst **
19537739-T-C 17425859-T-C **
13706820-A-C 11551144-A-C **
15173546-G-A 13061632-G-A **
16455280-C-A 14343400-C-A **
16412441-C-A 14300561-C-A **
15997274-G-A 13885394-G-A **
7018050-TTAG-T 7150009-TTAG-T **
15786016-G-T 13674136-G-T **
15620388-C-A 13508508-C-A **
15127057-G-T 13015144-G-T **
16961288-G-A 14849408-G-A BY47785 **
14858615-G-A 12746681-G-A **
14578505-C-A 12466705-C-A **
14281189-C-A 12160483-C-A **
14090344-C-A 11969638-C-A **
14073291-C-A 11952585-C-A **
13936942-C-A 11816236-C-A **
16708170-G-T 14596290-G-T **
17061107-A-G 14949227-A-G **
19416857-T-C 17304977-T-C **
18439232-C-A 16327352-C-A P6_Dst **
19256371-C-A 17144491-C-A **
18910896-CTGA-C 16799016-CTGA-C **
18904829-C-G 16792949-C-G **
18900647-G-A 16788767-G-A **
18857067-C-A 16745187-C-A **
18825485-C-G 16713605-C-G **
18191999-G-T 16080119-G-T **
17284617-G-T 15172737-G-T **
18165591-C-T 16053711-C-T **
17813496-G-C 15701616-G-C **
17669216-G-A 15557336-G-A BY116504 **
17633311-G-A 15521431-G-A **
17575253-T-C 15463373-T-C **
17342854-C-A 15230974-C-A **
5742896-G-T 5874855-G-T **
5159299-A-AT 5291258-A-AT **
16034226-C-A 13922346-C-A **
11001436-A-G **
17584292-C-A 15472412-C-A **
15860334-C-A 13748454-C-A **
10995615-C-A **
15818424-C-A 13706544-C-A **
14184422-CAAAAA-C 12063716-CAAAAA-C 26×A**
11001456-C-A **
56840040-A-G **
14039425-C-A 11918719-C-A **
11666432-C-A **
14967247-C-A 12855322-C-A **
56840029-T-A **
56840022-A-G **
10976934-G-T **
10821969-T-G **
3550598-A-AAC 3682557-A-AAC **
10956593-C-T **
21446217-CTTTTT-C 19284331-CTTTTT-C 23×T**
10958319-C-T **
10785225-C-T **
22426975-G-C 20265089-G-C DYZ19 **
10890208-A-T **
10890203-T-C **
10744257-C-CTTTTG **
11030193-C-G **
11030192-C-A **
6978262-C-T 7110221-C-T **
4769564-C-A 4901523-C-A **
20840816-C-A 18678930-C-A P4_Gap **
10776011-A-T **
9956364-T-TAA 10118755-T-TAA 16×A**
19597208-A-AT 17485328-A-AT P5_Prx **
10834078-G-A **
10669410-ATTTCATTCAT-C **
11020103-C-A **
20497381-T-TC 18335495-T-TC P5_Dst **
10834057-A-T **
10673887-C-CTG **
10753933-G-T **
19506079-ATG-A 17394199-ATG-A **
13838156-AGAATGGAATGGAATG-A 11717450-AGAATGGAATGGAATG-A 11×GAATG**
13489368-C-A 11333692-C-A **
58874785-T-A 56716086-A-T **
18612759-G-A 16500879-G-A BZ1908 15×TA**
58979810-C-G 56833663-C-G **
58986165-C-G 56840018-C-G **
28700822-TTA-T 26554675-TTA-T **
13707015-C-T 11551339-C-T BY47106 **
22164510-C-A 20002624-C-A **
8321465-GTTTA-G 8453424-GTTTA-G 5×TTTA**
18439255-G-GT 16327375-G-GT P6_Dst 25×T**
4240397-C-A 4372356-C-A **
2753908-T-G 2885867-T-G CTS136 Z2679 **
13474736-G-T 11319060-G-T **
13706086-ATGGCG-A 11550410-ATGGCG-A **
26902327-G-A 24756180-G-A P1_r3 **
10682509-T-C **
10661876-C-A **
11650456-C-T **
27497066-C-A 25350919-C-A P1_Y2 **
10744270-TC-T **
10744261-C-G **
10744244-T-A **
10744239-T-A **
21556942-TG-T 19395056-TG-T **
13489371-C-A 11333695-C-A **
14236026-CAAAAA-C 12115320-CAAAAA-C 16×A**
27497052-C-A 25350905-C-A P1_Y2 **
11643664-G-C **
11001485-A-T **
11001482-G-C **
11001478-C-T **
11001448-A-G **
11001427-C-CATTCA **
16344635-G-T 14232755-G-T **
10673815-C-T **
22426981-A-G 20265095-A-G DYZ19 **
10834064-C-CT **
27621-G-A **
8163075-C-A 8295034-C-A **
14474574-C-A 12353843-C-A **
9732792-G-T 9895183-G-T IR3_Prx **
10671003-T-G **
10976942-C-T **
16868512-C-A 14756632-C-A **
14347831-C-A 12227126-C-A **
11643676-A-AACTTC **
19668720-G-A 17556840-G-A P5_Prx **
24446726-G-T 22300579-G-T **
4769233-C-A 4901192-C-A **
8865888-G-T 8997847-G-T **
10926602-T-A **
22522476-C-A 20360590-C-A **
6847866-C-A 6979825-C-A **
6324842-C-T 6456801-C-T IR3_Dst **
7643074-C-A 7775033-C-A **
10682496-C-A **
10682587-C-G **
10958301-C-T **
21976225-C-A 19814339-C-A **
13489325-T-C 11333649-T-C **
15320497-A-C 13208603-A-C **
18071905-C-A 15960025-C-A **
10872280-C-T **
5409910-C-A 5541869-C-A **
10872317-A-T **
17604931-G-GTTT 15493051-G-GTTT 24×T**
5204513-C-T 5336472-C-T **
17013211-C-A 14901331-C-A **
7158971-C-A 7290930-C-A **
56843758-G-C **
14985315-C-A 12873383-C-A **
13489355-G-A 11333679-G-A **
13453259-C-A 11297583-C-A **
13880258-C-A 11759552-C-A **
16005177-C-A 13893297-C-A **
10671010-C-G **
10962848-C-A **
7334057-C-A 7466016-C-A **
3111889-C-A 3243848-C-A **
13305733-C-T 11150057-C-T **
2909627-C-A 3041586-C-A **
10773540-C-A **
17136019-G-A 15024139-G-A **
22729543-C-A 20567657-C-A **
21185025-C-A 19023139-C-A **
6816574-T-C 6948533-T-C **
10834052-C-T **
10926581-A-G **
5335971-C-A 5467930-C-A **
23081091-C-A 20919205-C-A ***
7657652-TAC-T 7789611-TAC-T ***
10959300-A-T ***
6774321-G-A 6906280-G-A ***
22542632-CATGAACTCATCAGTTCTT-C 20380746-CATGAACTCATCAGTTCTT-C ***
6870731-C-A 7002690-C-A ***
22134021-A-T 19972135-A-T ***
58979806-A-T 56833659-A-T ***
10987812-T-A ***
24468852-C-A 22322705-C-A ***
19464162-C-T 17352282-C-T ***
21754403-T-C ***
18738765-A-T 16626885-A-T ***
23532837-G-A 21370951-G-A FGC22245 ***
23793552-C-A 21631666-C-A ***
14886399-C-A 12774465-C-A 21×A***
5644920-A-G 5776879-A-G ***
6231178-GA-G,GAA 6363137-GA-G,GAA IR3_Dst 12×A***
28536093-T-C 26389946-T-C ***
14772676-ATTTT-A 12660745-ATTTT-A 21×T***
13811134-G-C 11690428-G-C ***
15993921-C-A 13882041-C-A ***
23277617-C-A 21115731-C-A ***
7163234-A-G 7295193-A-G PF4507 CTS1033 ***
2752725-CAAA-C,CAAAA 2884684-CAAA-C,CAAAA 18×A***
13489142-C-A,G 11333466-C-A,G ***
21980972-C-A 19819086-C-A ***
15909656-G-T 13797776-G-T ***
17045853-C-A 14933973-C-A ***
16760919-C-A 14649039-C-A ***
21603444-GAA-G 19441558-GAA-G 13×A***
56834469-A-T ***
10987784-C-T ***
24422453-C-A 22276306-C-A ***
16046139-C-A 13934259-C-A ***
10786465-C-G ***
5824636-C-A 5956595-C-A ***
10828177-C-CGGGTG ***
10805697-T-C ***
10828202-C-G ***
14784701-CT-C,CTTT 12672771-CT-C,CTTT 22×T***
14557936-G-A 12446137-G-A ***
14248973-C-A 12128267-C-A ***
15279206-GT-G,GTT 13167305-GT-G,GTT 13×T***
11643754-GAA-G ***
11643705-A-G ***
10828198-A-G ***
17362464-C-A 15250584-C-A ***
7096596-C-A 7228555-C-A ***
23079265-C-A 20917379-C-A ***
21698827-C-A 19536941-C-A ***
21333950-C-A 19172064-C-A ***
21214013-C-A 19052127-C-A ***
20832260-A-G 18670374-A-G BY212749 P4_Gap ***
14151860-C-A 12031154-C-A ***
13464397-G-T 11308721-G-T ***
10785259-G-GGAAGA ***
8084317-C-A 8216276-C-A ***
19290746-C-A 17178866-C-A ***
17503856-C-CAG 15391976-C-CAG ***
19071554-C-A 16959674-C-A ***
9813303-C-A 9975694-C-A ***
13688170-T-A 11532494-T-A ***
13453370-A-T 11297694-A-T ***
18039391-TTTTTTGC-T 15927511-TTTTTTGC-T ***
11643696-A-T ***
17654781-C-T 15542901-C-T ***
17533824-GAAAA-G 15421944-GAAAA-G 21×A***
17275003-TAGAT-T,TAGAC 15163123-TAGAT-T,TAGAC ***
8158767-C-A 8290726-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 855374907658974566257389297
Used in age calculations907658974566257389297
Counts of SNPs1715
Variant counts last updated 2019-08-26 23:03:49.



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