Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Y107974 > BY39347 > BY61695

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
841801
13451887-C-T 11296211-C-T A*
13452591-C-T 11296915-C-T A*
13687765-T-A 11532089-T-A A*
24291307-G-A 22145160-G-A P3_t1 A*
26200020-C-T 24053873-C-T P1_Y1 A*
28817381-A-T 26671234-A-T A*
22272571-C-A 20110685-C-A Z7877 DYZ19 +
18100652-C-A 15988772-C-A BY165245 YY+
6787908-GA-G 6919867-GA-G +
8806347-C-T 8938306-C-T BY164757 YY+
9061660-C-T 9224051-C-T BY164775 Y+
13868021-G-A 11747315-G-A BY164846 +
14127480-C-A 12006774-C-A BY164870 YY+
15723496-G-A 13611616-G-A BY164994 YY+
16595942-G-C 14484062-G-C BY165070 YY+
17694577-G-A 15582697-G-A BY165196 YY+
18219918-A-G 16108038-A-G BY165257 Y+
18236879-T-TA 16124999-T-TA +
18868376-A-C 16756496-A-C BY165300 YY+
18946471-C-A 16834591-C-A BY165307 YY+
19522335-G-A 17410455-G-A BY165377 YY+
21144181-G-T 18982295-G-T BY165393 YY+
21563625-C-T 19401739-C-T BY165429 YY+
22461120-T-C 20299234-T-C BY220651 DYZ19 +
22753513-C-T 20591627-C-T BY165529 YY+
23141237-C-T 20979351-C-T BY143307 YY+
23608879-G-C 21446993-G-C BY165604 YY+
23795354-T-C 21633468-T-C BY165614 Y+
23820116-A-T 21658230-A-T BY165616 Y+
24343340-C-T 22197193-C-T BY226061 P3_t1 +
28732276-A-G 26586129-A-G BY165651 Y+
13463896-T-A,C 11308220-T-A,C *
22317060-T-A 20155174-T-A DYZ19 *
19794336-A-G 17682456-A-G P5_Prx *
22269329-G-A 20107443-G-A DYZ19 *
22314557-C-G 20152671-C-G DYZ19 *
22317424-T-G 20155538-T-G DYZ19 *
23713748-ATG-A 21551862-ATG-A 19×TG**
28612323-G-A 26466176-G-A **
15842559-T-TTC 13730679-T-TTC **
7301691-A-C 7433650-A-C CTS1266 Z2707 **
13961890-G-A 11841184-G-A PF3696 CTS1555 **
15070635-G-A 12958726-G-A **
28689055-G-T 26542908-G-T CTS12746 M815 **
6037598-G-T 6169557-G-T Z2338Y3549 FGC8754 **
18060306-A-ATGTG 15948426-A-ATGTG **
7501422-G-T 7633381-G-T IR1_L **
6755392-C-A 6887351-C-A YP5000 **
22881263-C-G 20719377-C-G **
21100833-G-T 18938947-G-T **
2817709-CAAAAA-C 2949668-CAAAAA-C 30×A**
17527440-A-G 15415560-A-G ZS7919 **
10768635-T-C FT430371 **
10768654-AATCCATTCTT-A **
22011308-T-C 19849422-T-C **
15363952-T-C 13252072-T-C **
10826506-G-T **
22881291-A-G 20719405-A-G **
10928808-C-T **
10928811-C-A **
7301586-G-A 7433545-G-A **
10768643-A-C **
18756798-G-GTT 16644918-G-GTT 19×T**
14429288-C-A 12308563-C-A **
10677762-C-A **
11015811-C-G **
11015812-C-T **
11015831-T-C **
11015834-G-T **
11015835-C-A **
11015846-T-A **
10768969-A-C **
11013908-T-C **
15047887-T-C 12935978-T-C **
10839665-G-T **
10808685-C-T **
28724312-G-A 26578165-G-A **
10019597-CT-C 10181988-CT-C 9×T**
13485592-A-T 11329916-A-T **
21187851-T-G 19025965-T-G **
20101697-T-A 17989817-T-A P5_Dst **
10955285-C-T **
11034115-C-T **
20840208-C-A 18678322-C-A P4_Gap **
10677823-T-G **
10677823-TTTCA-T **
10677832-G-A **
10921127-A-T **
14735020-C-CA 12623088-C-CA **
13466352-A-C 11310676-A-C **
10795920-GTGTTC-A **
10688210-C-T **
10688229-C-G **
10688265-C-A **
10688277-T-A **
10688291-C-A FT429076 **
10688297-A-C **
9056459-C-A **
56861714-C-G **
10763175-T-A **
10972534-T-A **
14735066-A-C 12623134-A-C **
14735086-T-A 12623154-T-A **
10973912-C-T **
14931975-C-A 12820040-C-A **
10841991-T-C **
16305781-C-A 14193901-C-A **
4930656-C-A 5062615-C-A **
10789825-T-C **
10825300-C-T FT432879 **
10928861-T-C **
7167119-T-G 7299078-T-G **
28521607-C-A 26375460-C-A **
10973612-C-T **
2855572-C-T 2987531-C-T BY192956 **
28724314-C-T 26578167-C-T **
14734996-A-G 12623064-A-G **
27856405-G-T 25710258-G-T P1_Y2 **
21189667-TCAA-T 19027781-TCAA-T **
19048041-G-GTA 16936161-G-GTA **
28660474-C-A 26514327-C-A **
13839785-G-A 11719079-G-A **
15957736-C-A 13845856-C-A **
6971731-CA-C 7103690-CA-C **
11013941-T-C **
10972431-T-A **
15404229-C-T 13292349-C-T **
14735097-T-C 12623165-T-C **
9700735-C-A 9863126-C-A IR3_Prx **
10688249-C-A FT429075 **
10688251-A-C **
10669539-C-T **
10955295-C-A **
10955301-C-T **
10955302-A-G **
28800893-C-A 26654746-C-A FT462166 **
11034066-T-G **
11034102-C-T **
16305785-C-T 14193905-C-T **
6012956-C-A 6144915-C-A **
15496914-C-A 13385034-C-A **
10992620-T-C FT439514 **
11005465-T-A **
14023072-C-A 11902366-C-A **
22028317-C-A 19866431-C-A **
16079338-C-A 13967458-C-A **
11037125-C-A **
15578884-C-A 13467004-C-A **
6767836-T-A 6899795-T-A **
22353449-C-A 20191563-C-A DYZ19 **
21695067-C-A 19533181-C-A **
8850135-C-A 8982094-C-A **
10950932-A-T **
15352853-C-A 13240972-C-A **
7613915-A-G 7745874-A-G **
7649328-T-C 7781287-T-C **
7649329-G-A 7781288-G-A **
16608050-AT-A 14496170-AT-A 9×T**
10677792-C-G **
13644809-C-A 11489133-C-A **
9056282-C-A **
10677856-G-T **
24468856-A-AT 22322709-A-AT 9×T**
7613924-A-G 7745883-A-G **
23065102-C-A 20903216-C-A **
11003789-T-G **
11669049-C-A FT451086 **
10829280-T-C **
21486881-C-A 19324995-C-A **
8690250-C-A 8822209-C-A **
10663814-T-C **
24406567-A-G 22260420-A-G **
18522404-G-T 16410524-G-T P6_Dst **
10688275-C-T **
9764313-A-C 9926704-A-C **
10688604-C-A **
2854906-T-C 2986865-T-C **
2854909-A-G 2986868-A-G **
20868952-TAA-T 18707066-TAA-T P4_Dst 12×A**
18071843-C-A 15959963-C-A **
28724270-G-A 26578123-G-A **
28724277-C-A 26578130-C-A **
28724322-G-A 26578175-G-A **
11030249-T-A **
13722736-T-C 11567060-T-C **
15252691-C-A 13140777-C-A **
22236918-G-A 20075032-G-A DYZ19 **
13899486-C-A 11778780-C-A **
13722655-G-A 11566979-G-A **
8427543-C-A 8559502-C-A **
15130615-C-A 13018702-C-A **
2884907-C-A 3016866-C-A **
26053583-T-G 23907436-T-G P1_Y1 **
14735031-A-G 12623099-A-G **
11650147-C-A **
24278462-AC-A 22132315-AC-A P3_b1 **
28622664-C-A 26476517-C-A **
28622667-G-C 26476520-G-C **
14515637-G-T 12403838-G-T **
11013920-C-T FT439923 **
10861705-G-T **
10932641-G-T FT69824FT219324 **
17673289-C-A 15561409-C-A **
21443854-C-A 19281968-C-A **
8776593-G-T 8908552-G-T **
21105577-C-G 18943691-C-G **
21105580-T-C 18943694-T-C **
28622810-C-A 26476663-C-A **
7780741-T-A 7912700-T-A 11×A**
10953591-C-A **
16989314-C-A 14877434-C-A **
28655584-G-A 26509437-G-A FT381603 **
21146450-A-T 18984564-A-T **
15104800-A-C 12992888-A-C **
7613907-T-G 7745866-T-G **
10944777-C-A **
28461947-T-A 26315800-T-A **
28461966-G-A 26315819-G-A **
15916374-C-A 13804494-C-A **
8092686-G-T 8224645-G-T **
19078469-C-A 16966589-C-A **
7108800-C-A 7240759-C-A **
14888249-ATT-A 12776315-ATT-A **
8479463-G-A 8611422-G-A FT179392 **
17591866-C-A 15479986-C-A **
25512919-G-T 23366772-G-T P1_gr1 **
16305807-C-T 14193927-C-T **
14735035-A-G 12623103-A-G **
14765782-G-C 12653851-G-C **
15047897-C-G 12935988-C-G **
7649316-T-C 7781275-T-C **
22881222-A-G 20719336-A-G **
8911623-C-T 9043582-C-T **
10763170-C-G **
2722052-G-C 2854011-G-C **
2790464-T-TG 2922423-T-TG **
2854900-A-G 2986859-A-G **
2855590-A-T 2987549-A-T **
2894607-CT-C 3026566-CT-C **
3851894-C-A 3983853-C-A **
4114221-C-A 4246180-C-A **
4326071-G-A 4458030-G-A **
4900845-A-G 5032804-A-G **
5214581-C-A 5346540-C-A **
5292876-C-A 5424835-C-A **
5612915-C-G 5744874-C-G **
6505264-T-C 6637223-T-C **
6800586-C-A 6932545-C-A **
7098586-C-A 7230545-C-A **
7228163-C-A 7360122-C-A **
7258511-T-G 7390470-T-G **
7509940-C-A 7641899-C-A **
7541016-T-G 7672975-T-G **
7613905-C-T 7745864-C-T **
7613922-A-G 7745881-A-G **
7613926-T-C 7745885-T-C **
7649305-C-T 7781264-C-T **
7649315-A-C 7781274-A-C **
7649317-G-A 7781276-G-A **
7649334-A-ATT 7781293-A-ATT **
7709255-C-A 7841214-C-A **
7709285-C-A 7841244-C-A **
7717747-T-G 7849706-T-G **
7761171-C-A 7893130-C-A **
7781074-C-A 7913033-C-A **
7896640-C-A 8028599-C-A **
8008806-C-A 8140765-C-A **
8216283-G-A 8348242-G-A **
8321417-A-AT 8453376-A-AT **
8350664-T-C 8482623-T-C **
8717863-C-T 8849822-C-T FT370020 **
9109929-C-A **
9058700-T-C 9221091-T-C **
9186079-C-A 9348470-C-A **
9806914-T-C 9969305-T-C **
9958972-C-T 10121363-C-T **
10017826-C-A 10180217-C-A **
10683484-C-T **
10688601-C-A **
10688608-T-A **
10745081-C-A **
10768700-T-TTGAGC **
10789864-T-G **
10799240-C-T FGC77412 **
10801303-A-G **
10869871-C-T **
10934382-G-A **
10934386-C-A **
10934396-A-C **
10934407-G-A FT271036 **
10934408-C-T **
10934414-T-C **
10934421-C-A **
10934422-T-A **
10997710-GTTCCATTCCATTCCA-G **
11010237-T-C **
11032239-A-G **
11033087-T-C **
11037177-C-A **
13482067-A-C 11326391-A-C **
13486914-A-T 11331238-A-T **
13587921-C-A 11432245-C-A **
13596969-C-A 11441293-C-A **
13720534-TAATGG-T 11564858-TAATGG-T **
13800992-A-G 11680286-A-G 4×GGAAT**
13911159-C-A 11790453-C-A **
14068402-C-A 11947696-C-A **
14219677-A-T 12098971-A-T **
14593018-C-A 12481218-C-A **
14722515-A-G 12610583-A-G **
14735000-C-A 12623068-C-A **
14735032-G-A 12623100-G-A **
14735038-G-A 12623106-G-A **
14735041-G-GC 12623109-G-GC **
14735043-GT-G 12623111-GT-G **
14735067-A-G 12623135-A-G **
14735088-C-T 12623156-C-T **
14735101-G-A 12623169-G-A **
14765783-G-A 12653852-G-A **
14765789-T-C 12653858-T-C **
14765792-A-G 12653861-A-G **
14765804-T-C 12653873-T-C **
14765807-T-G 12653876-T-G **
14846954-A-G 12735020-A-G **
14871373-C-A 12759443-C-A **
14888247-G-C 12776313-G-C **
14888258-G-A 12776324-G-A **
14942898-A-G 12830972-A-G **
15047896-C-T 12935987-C-T **
15047902-A-C 12935993-A-C **
15047903-C-CCA 12935994-C-CCA **
15047908-CCT-C 12935999-CCT-C **
15104806-G-A 12992894-G-A **
15104811-G-T 12992899-G-T **
15104823-A-T 12992911-A-T **
15115714-C-A 13003801-C-A **
15119523-T-A 13007610-T-A **
15119524-A-T 13007611-A-T **
15161347-C-A 13049433-C-A **
15211045-A-G 13099131-A-G **
15338646-C-A 13226764-C-A **
15363916-C-CA 13252036-C-CA **
15363955-G-C 13252075-G-C **
15364523-C-A 13252643-C-A **
15366427-T-C 13254547-T-C **
15394924-C-A 13283044-C-A **
15404227-G-A 13292347-G-A **
15404243-T-C 13292363-T-C **
15618513-T-G 13506633-T-G **
15745940-A-C 13634060-A-C **
15831380-G-A 13719500-G-A **
15964843-G-A 13852963-G-A **
16231274-C-A 14119394-C-A **
16305767-T-C 14193887-T-C **
16305769-C-CAA 14193889-C-CAA **
16305840-G-T 14193960-G-T **
16305842-G-A 14193962-G-A **
16749970-G-A 14638090-G-A **
16821438-C-CA 14709558-C-CA **
16838909-G-A 14727029-G-A FT180820 **
17054892-T-A 14943012-T-A **
17157618-A-T 15045738-A-T **
17327461-C-A 15215581-C-A **
17346333-A-G 15234453-A-G **
17349376-CTCAAAAAAAAAAAAAAAAAAAAAAAAAA-C 15237496-CTCAAAAAAAAAAAAAAAAAAAAAAAAAA-C **
17355533-T-G 15243653-T-G **
17374348-C-A 15262468-C-A **
17788618-C-A 15676738-C-A **
17789595-G-A 15677715-G-A **
17860731-A-T 15748851-A-T **
18022497-C-A 15910617-C-A **
18572656-C-A 16460776-C-A **
18764424-T-A 16652544-T-A **
18816993-C-A 16705113-C-A **
18841135-A-G 16729255-A-G **
19001220-G-A 16889340-G-A **
19198112-G-A 17086232-G-A **
19393293-A-T 17281413-A-T **
19394237-C-A 17282357-C-A **
19482118-C-A 17370238-C-A **
19537955-A-T 17426075-A-T **
20239305-G-T 18077419-G-T P5_Dst **
21092343-C-A 18930457-C-A **
21326569-C-A 19164683-C-A **
21574986-G-T 19413100-G-T **
21624950-C-A 19463064-C-A **
21662167-A-C 19500281-A-C **
21702043-T-C 19540157-T-C **
21702046-A-T 19540160-A-T **
21702045-CAAAA-C 19540159-CAAAA-C 10×A**
21911243-G-A 19749357-G-A FT182281 **
21991580-C-A 19829694-C-A **
22011324-T-A 19849438-T-A **
22032710-T-C 19870824-T-C **
22092857-G-A 19930971-G-A **
22173942-C-T 20012056-C-T FT202458 **
22749454-G-T 20587568-G-T **
22755597-T-TA 20593711-T-TA **
22791216-T-G 20629330-T-G **
22835273-ACCACAAAAAAAG-A 20673387-ACCACAAAAAAAG-A **
22881217-T-C 20719331-T-C **
22881239-ATTT-A 20719353-ATTT-A 9×T**
22881261-G-T 20719375-G-T **
22881266-A-G 20719380-A-G **
22881289-A-G 20719403-A-G **
23059092-C-A 20897206-C-A **
23311181-T-G 21149295-T-G **
23435190-T-A 21273304-T-A **
23511677-C-A 21349791-C-A **
23803318-A-G 21641432-A-G **
24667965-T-A 22521818-T-A P3_b2 **
24878822-TCTC-T 22732675-TCTC-T g1 **
25512897-G-T 23366750-G-T P1_gr1 **
26084868-T-C 23938721-T-C P1_Y1 **
27264837-TAA-T 25118690-TAA-T P1_g3 12×A**
28460825-C-A 26314678-C-A FTA37195 **
28461958-C-CAG 26315811-C-CAG **
28601123-A-C 26454976-A-C **
28635393-A-T 26489246-A-T **
28724328-C-T 26578181-C-T **
28724338-G-T 26578191-G-T **
28724397-C-A 26578250-C-A **
28768574-T-A 26622427-T-A **
56848666-G-T **
7196046-CTTTTT-C 7328005-CTTTTT-C 16×T***
14096618-TAAAAA-T 11975912-TAAAAA-T 17×A***
11022936-C-G ***
3621482-G-T 3753441-G-T ***
10810567-G-A,T ***
15263518-C-A 13151608-C-A ***
56827588-T-C ***
15622778-C-CA 13510898-C-CA 9×A***
10757359-C-T ***
10769444-G-GCATGT ***
13446531-ATTCCATTCCATTCCATTC-A,ATTCCATTAAAATCCATTCCATTAAAATC 11290855-ATTCCATTCCATTCCATTC-A,ATTCCATTAAAATCCATTCCATTAAAATC ***
56832182-G-GCATTC 4×CATTC***
8849601-C-A 8981560-C-A ***
8890986-TAAA-T 9022945-TAAA-T 14×A***
15163300-AT-A,ATT 13051386-AT-A,ATT 15×T***
10804000-C-A ***
17764027-C-A 15652147-C-A ***
10895803-TTCCGTTCCTC-T,TTCCATTCTAT ***
7338442-GTA-G 7470401-GTA-G ***
17817844-C-A 15705964-C-A ***
15412475-T-A 13300595-T-A ***
19103880-GTT-G 16992000-GTT-G 13×T***
6739948-T-C 6871907-T-C ***
10937432-A-C,T ***
7518493-CAAA-C,CAA 7650452-CAAA-C,CAA 19×A***
10757357-C-A ***
10693779-C-A ***
14151448-C-A 12030742-C-A ***
8717102-C-A 8849061-C-A ***
14842382-C-A 12730449-C-A ***
21929600-GTATA-G,GTA 19767714-GTATA-G,GTA 12×TA***
23499575-C-CAA 21337689-C-CAA 12×A***
6780870-CAAAAA-C 6912829-CAAAAA-C 26×A***
8713855-C-A 8845814-C-A ***
8571150-CA-C,CAA 8703109-CA-C,CAA 14×A***
15617066-CA-C,CAA 13505186-CA-C,CAA 11×A***
2721876-AT-A,ATT 2853835-AT-A,ATT 14×T***
6398304-C-A 6530263-C-A ***
6739956-T-C 6871915-T-C ***
6739957-G-A 6871916-G-A ***
7008927-C-A 7140886-C-A ***
7292448-C-A 7424407-C-A ***
7974234-G-A 8106193-G-A ***
7976275-TA-T 8108234-TA-T ***
8093208-T-C 8225167-T-C ***
9029736-CTT-C,CTTT 9192127-CTT-C,CTTT 16×T***
9446811-C-A 9609202-C-A ***
9643020-C-A 9805411-C-A IR3_Prx ***
10654793-T-A ***
10784375-C-A ***
10807238-C-A ***
10989491-C-CC,T ***
13819448-C-G 11698742-C-G ***
14459470-C-A 12338743-C-A ***
15040921-G-A 12929011-G-A ***
15055591-AC-A 12943683-AC-A ***
15604354-CAAAAAA-C,CAAAAA 13492474-CAAAAAA-C,CAAAAA 20×A***
16290898-C-A 14179018-C-A ***
16510855-C-A 14398975-C-A ***
17020330-A-G 14908450-A-G ***
17078863-T-C 14966983-T-C ***
17133028-C-A 15021148-C-A ***
17353133-A-T 15241253-A-T ***
17866671-A-G 15754791-A-G ***
17951299-ATTTTTT-A,AT 15839419-ATTTTTT-A,AT 25×T***
19094959-C-A 16983079-C-A ***
19107062-C-A 16995182-C-A ***
21306075-A-C 19144189-A-C ***
21939262-C-A 19777376-C-A ***
22044767-T-C 19882881-T-C ***
22207685-A-G 20045799-A-G ***
22971565-T-C 20809679-T-C ***
24494605-A-G 22348458-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.