Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > CTS4188 > S14445 > BY3252 > BY27681

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
319528
18328465-A-T 16216585-A-T P6_Prx A*
16899896-A-T 14788016-A-T BY159705 YY+
22466718-C-T 20304832-C-T BY221764 DYZ19 +
18061584-CA-C 15949704-CA-C 9×A+
22507996-C-T 20346110-C-T BY41188 FGC82729 DYZ19 +
8695783-A-G 8827742-A-G BY160305 YY+
21779250-G-A 19617364-G-A YY+
14417792-C-G 12297089-C-G BY160043 YY+
8297637-C-G 8429596-C-G BY160401 YY+
8530852-T-G 8662811-T-G BY160337 YY+
22512144-C-T 20350258-C-T BY225817 DYZ19 +
17427792-A-G 15315912-A-G BY159604 YY+
8128631-T-C 8260590-T-C BY160431 YY+
22592787-A-G 20430901-A-G BY158962 Y+
14276046-A-T 12155340-A-T BY160073 YY+
18550377-T-C 16438497-T-C BY159414 Y+
22300290-G-A 20138404-G-A DYZ19 *
22254455-G-C 20092569-G-C DYZ19 *
22319531-A-C 20157645-A-C DYZ19 *
9733638-G-T 9896029-G-T IR3_Prx **
7849959-T-G 7981918-T-G **
10012709-C-A 10175100-C-A **
21708279-C-A 19546393-C-A **
9928163-A-G 10090554-A-G **
7849962-CT-C 7981921-CT-C **
9847319-C-A 10009710-C-A **
9811077-C-T 9973468-C-T **
8016938-C-CTTTT 8148897-C-CTTTT 25×T**
8170866-C-A 8302825-C-A **
8728258-A-C 8860217-A-C **
9576506-CAAAAAAATCGG-C 9738897-CAAAAAAATCGG-C IR3_Prx **
8647961-G-T 8779920-G-T **
8661356-C-A 8793315-C-A **
9465308-C-A 9627699-C-A **
9221750-C-A 9384141-C-A **
21853639-C-T 19691753-C-T **
21836165-C-A 19674279-C-A **
9055399-C-A 9217790-C-A **
10645874-C-A **
8762005-G-A 8893964-G-A **
6861587-C-A 6993546-C-A **
10653110-T-TGCCTC **
10776029-C-CACTG **
10952465-C-T **
10941575-T-A **
10940234-C-A **
10925486-T-TTCTAG **
10924720-T-TCCGA **
10889754-C-A **
10874936-A-G **
10860048-C-A **
10859868-A-T **
10859856-A-C **
10829958-T-A **
10809173-C-T **
10776026-A-AT **
10653143-C-AGGTTA **
10767677-A-G **
10767665-C-T **
10752829-T-C **
10751928-C-A **
10750741-A-T **
10750638-C-A **
10745763-C-A **
10693839-C-A **
10689169-A-G **
7784908-C-A 7916867-C-A **
10689147-C-CAATATCATTCCATTA **
10683216-T-A **
10666736-C-A **
7821489-T-C 7953448-T-C **
7359167-C-A 7491126-C-A **
7717820-C-T 7849779-C-T **
3218493-T-G 3350452-T-G **
5426492-T-C 5558451-T-C **
5317461-C-A 5449420-C-A **
5249669-G-A 5381628-G-A **
4874956-G-T 5006915-G-T **
4241521-C-A 4373480-C-A **
22319066-AT-A 20157180-AT-A DYZ19 **
4012757-C-A 4144716-C-A **
3932762-G-T 4064721-G-T **
3691293-G-T 3823252-G-T **
3597525-TTATAA-T 3729484-TTATAA-T **
3518666-C-T 3650625-C-T **
3410123-C-A 3542082-C-A **
3069145-C-A 3201104-C-A **
5577261-C-A 5709220-C-A **
2912715-G-T 3044674-G-T **
2811047-A-G 2943006-A-G **
2806744-A-G 2938703-A-G **
2806743-C-T 2938702-C-T **
2806741-T-C 2938700-T-C **
2800843-G-T 2932802-G-T **
2762163-C-A 2894122-C-A **
2673912-T-C 2805871-T-C **
2660494-C-A 2792453-C-A **
2651317-A-G 2783276-A-G **
10859849-G-T **
19463917-C-A 17352037-C-A **
5428611-C-A 5560570-C-A **
5587143-G-T 5719102-G-T **
7642956-C-A 7774915-C-A **
7160442-T-G 7292401-T-G **
7471250-G-T 7603209-G-T IR1_L **
7433525-C-A 7565484-C-A **
7387362-C-G 7519321-C-G **
7378422-T-A 7510381-T-A **
10959581-T-C **
7358109-C-G 7490068-C-G **
7309134-T-C 7441093-T-C **
7256103-A-AG 7388062-A-AG **
21950453-C-A 19788567-C-A **
21990467-C-A 19828581-C-A **
22202919-A-G 20041033-A-G **
7185667-C-A 7317626-C-A **
7151063-C-A 7283022-C-A **
5612950-A-C 5744909-A-C **
7100956-T-G 7232915-T-G **
7087851-T-A 7219810-T-A **
7048722-A-C 7180681-A-C **
16371765-CAGT-C 14259885-CAGT-C **
6780840-C-A 6912799-C-A **
6591405-G-A 6723364-G-A **
6475230-C-A 6607189-C-A **
6455981-C-T 6587940-C-T **
6395125-A-G 6527084-A-G **
5995210-T-G 6127169-T-G **
5969694-C-A 6101653-C-A **
5845321-A-G 5977280-A-G **
10959576-T-A **
11015642-C-A **
10959596-T-C **
16085567-G-T 13973687-G-T **
16933314-C-A 14821434-C-A **
16913422-CAAAAAAAA-C 14801542-CAAAAAAAA-C 21×A**
20974879-CAACAACAA-C 18812993-CAACAACAA-C P4_Dst **
16696196-C-A 14584316-C-A **
16684618-C-T 14572738-C-T **
16491386-A-G 14379506-A-G **
16469509-C-T 14357629-C-T **
16462529-G-T 14350649-G-T **
16460105-A-G 14348225-A-G **
16421536-T-C 14309656-T-C **
16094280-C-A 13982400-C-A **
16085753-C-A 13973873-C-A **
16037119-T-C 13925239-T-C **
17115278-C-A 15003398-C-A **
15947993-A-G 13836113-A-G **
15775740-G-T 13663860-G-T **
21216921-G-A 19055035-G-A **
15721226-C-A 13609346-C-A **
21382436-C-G 19220550-C-G **
15324241-C-A 13212359-C-A **
21387276-T-G 19225390-T-G **
15251914-C-T 13140000-C-T **
15251900-G-A 13139986-G-A **
15251899-T-C 13139985-T-C **
15237949-C-A 13126035-C-A **
15210703-C-A 13098789-C-A **
15127808-C-A 13015895-C-A **
20775010-A-G 18613124-A-G P4_Prx **
20603915-AAT-A 18442029-AAT-A P5_Dst **
15113653-T-C 13001740-T-C **
18663325-C-A 16551445-C-A **
19304667-C-A 17192787-C-A **
19241401-T-A 17129521-T-A **
19179030-C-A 17067150-C-A **
19081615-C-T 16969735-C-T **
19041026-G-T 16929146-G-T **
18991263-C-A 16879383-C-A **
18986348-C-A 16874468-C-A **
18983903-C-A 16872023-C-A **
19463931-C-A 17352051-C-A **
18924790-T-C 16812910-T-C **
18758008-C-A 16646128-C-A **
18754736-T-G 16642856-T-G **
18586750-C-A 16474870-C-A **
19564106-A-C 17452226-A-C **
18443612-C-A 16331732-C-A P6_Dst **
19472606-C-T 17360726-C-T **
19524409-C-A 17412529-C-A **
18126460-G-T 16014580-G-T **
18115893-G-A 16004013-G-A **
17946915-G-GT 15835035-G-GT **
19564092-T-G 17452212-T-G **
17794282-T-TTCTG 15682402-T-TTCTG **
17504711-G-T 15392831-G-T **
17464984-C-A 15353104-C-A **
17300742-C-A 15188862-C-A **
17294617-C-A 15182737-C-A **
17211446-G-A 15099566-G-A **
21455343-G-T 19293457-G-T **
15059935-C-G 12948027-C-G **
10963256-T-C **
11645133-G-T **
14216366-C-A 12095660-C-A **
14146128-C-A 12025422-C-A **
14030750-T-C 11910044-T-C **
21565192-A-G 19403306-A-G **
13959310-A-G 11838604-A-G **
13902791-C-T 11782085-C-T **
13859020-G-T 11738314-G-T **
13818060-A-C 11697354-A-C **
13811180-A-C 11690474-A-C **
13800806-A-G 11680100-A-G **
11672253-G-T **
11646393-C-T **
13379160-C-A 11223484-C-A **
21544921-C-A 19383035-C-A **
13294003-C-A 11138327-C-A **
13258467-G-C 11102791-G-C **
13258456-G-A 11102780-G-A **
13258445-A-T 11102769-A-T **
13258438-G-A 11102762-G-A **
13258433-GT-G 11102757-GT-G **
13258431-C-T 11102755-C-T **
11037777-C-A **
11031623-T-C **
11031601-C-A **
11031599-T-A **
15059879-T-A 12947971-T-A **
10964818-A-ATTCCACTC **
14230295-A-G 12109589-A-G **
14296388-C-A 12175682-C-A **
15059929-G-A 12948021-G-A **
14849185-C-A 12737251-C-A **
15059928-A-C 12948020-A-C **
15059922-C-A 12948014-C-A **
15059906-C-G 12947998-C-G **
15059875-G-A 12947967-G-A **
15059851-C-T 12947943-C-T **
15059849-A-C 12947941-A-C FT45140 **
15059843-T-C 12947935-T-C **
15059830-T-G 12947922-T-G **
15059820-A-G 12947912-A-G **
15059819-C-A 12947911-C-A **
15059813-G-A 12947905-G-A **
15034961-G-T 12923049-G-T **
21492864-C-A 19330978-C-A **
14816858-C-A 12704929-C-A **
14347821-G-T 12227116-G-T **
14743694-C-A 12631763-C-A **
14622089-T-A 12510287-T-A **
14617910-C-A 12506108-C-A **
14591859-C-A 12480059-C-A **
14560007-C-T 12448208-C-T **
14511797-G-T 12400002-G-T **
14505968-G-T 12394173-G-T **
14432434-G-A 12311707-G-A **
14376610-C-T 12255906-C-T **
14373798-C-T 12253094-C-T **
14371330-A-T 12250626-A-T **
14368048-G-T 12247344-G-T **
14358446-C-A 12237741-C-A **
11007445-C-A **
3994644-C-A 4126603-C-A **
15059869-A-T 12947961-A-T **
10929178-G-A **
10653138-C-T **
10929194-C-G **
10929186-C-T **
10929185-T-A **
10929171-C-CCA **
10929168-A-T **
10929118-A-C **
10929094-G-A **
6816766-C-A 6948725-C-A **
10678187-T-TAC **
23841542-C-A 21679656-C-A **
10929181-G-C **
9959845-AAAT-A 10122236-AAAT-A 6×AAT**
14582227-C-A 12470427-C-A **
10770686-A-ATT **
23860797-T-A 21698911-T-A **
10773356-T-G **
13453392-T-C 11297716-T-C **
7311613-C-T 7443572-C-T **
10870399-T-TTCCAA **
24359632-C-A 22213485-C-A **
10770692-C-A **
11034815-A-C **
28802836-G-A 26656689-G-A **
56845143-A-C **
56845142-C-T **
56845138-G-A **
7271317-C-A 7403276-C-A **
23591014-T-A 21429128-T-A **
9942043-A-AT 10104434-A-AT 28×T**
26463152-C-A 24317005-C-A P1_Y1 **
15882070-G-T 13770190-G-T **
10790229-C-A **
6881529-C-A 7013488-C-A **
7256308-C-A 7388267-C-A **
10659556-C-A **
21476920-C-A 19315034-C-A **
5924713-G-GA 6056672-G-GA 10×A**
56845121-T-C **
56845111-A-G **
7898746-C-A 8030705-C-A **
10893347-T-C FGC81056 **
14986597-C-A 12874665-C-A **
22065319-C-A 19903433-C-A **
10870444-T-C **
15251922-T-A 13140008-T-A **
14038268-G-A 11917562-G-A **
4918444-C-A 5050403-C-A **
10870429-T-G **
8379581-G-C 8511540-G-C **
14464276-C-A 12343549-C-A **
28653366-C-CAA 26507219-C-CAA 12×A**
13570887-C-A 11415211-C-A **
7127319-C-A 7259278-C-A **
3991807-C-A 4123766-C-A **
10659551-C-G **
10659531-C-A **
10659526-C-A **
24432037-C-A 22285890-C-A **
2901289-GT-G 3033248-GT-G 9×T**
18052567-C-A 15940687-C-A **
28782782-C-A 26636635-C-A **
10750677-T-C **
10821907-C-T **
4769573-C-A 4901532-C-A **
28105343-C-A 25959196-C-A P1_Y2 **
28484291-C-A 26338144-C-A **
28497429-C-A 26351282-C-A **
28548927-G-T 26402780-G-T **
28551754-G-T 26405607-G-T **
28610175-T-G 26464028-T-G **
28611588-C-A 26465441-C-A **
28793783-G-T 26647636-G-T **
28771767-A-T 26625620-A-T **
13811193-G-T 11690487-G-T **
10678185-T-TCCA **
28802820-GT-G 26656673-GT-G **
6427695-TA-T 6559654-TA-T 10×A**
28802828-G-C 26656681-G-C **
28802836-GTGGAT-G 26656689-GTGGAT-G **
17945431-AT-A 15833551-AT-A 10×T**
13457681-C-T 11302005-C-T **
28760214-C-A 26614067-C-A **
15363842-C-T 13251962-C-T PH1670 **
19375292-A-T 17263412-A-T L575 Z2839 V4059 **
56845164-G-T **
56846959-C-T **
56872917-C-A **
19377412-G-GAGGA 17265532-G-GAGGA 7×AGGA**
10750683-C-T **
10918042-A-G **
56838894-A-C **
10744863-C-A **
5278078-TTG-T 5410037-TTG-T 14×TG**
10929161-C-T **
10929150-T-C **
10929140-C-A **
10929123-G-T **
10929122-T-A **
26328704-G-T 24182557-G-T P1_Y1 **
10788717-G-T **
13258465-T-A 11102789-T-A **
22580065-A-T 20418179-A-T **
10869972-C-CAATCGAGGTG **
21152473-C-A 18990587-C-A **
14324921-G-T 12204215-G-T **
24870819-A-C 22724672-A-C P3_b2 **
10952466-A-T **
14543936-C-A 12432137-C-A **
23591010-C-T 21429124-C-T **
26276057-C-A 24129910-C-A P1_Y1 **
11034847-T-A **
11034830-A-C **
10935579-C-CTCCATTCCAT **
13811171-A-ACCCGTG 11690465-A-ACCCGTG **
13811167-TG-T 11690461-TG-T **
10826205-A-C **
14538061-G-A 12426262-G-A **
10826235-C-A **
10821923-A-T **
10952509-A-G **
16039334-C-A 13927454-C-A **
15059854-C-T 12947946-C-T **
10013891-C-A 10176282-C-A **
10951728-T-C **
19466852-C-A 17354972-C-A **
13939030-C-A 11818324-C-A **
22619306-T-C 20457420-T-C **
23036533-C-T 20874647-C-T **
23445213-C-A 21283327-C-A **
10874515-C-A **
10831598-T-G **
10959590-T-A **
10750716-A-G **
10645850-C-A **
22747069-C-A 20585183-C-A **
10840756-C-A **
10744242-C-A **
22619183-C-A 20457297-C-A **
21737974-G-GAA 19576088-G-GAA 12×A**
10893910-C-A **
22857842-C-A 20695956-C-A **
22827471-T-TA 20665585-T-TA **
6934674-T-G 7066633-T-G **
10793637-C-A **
18605186-C-A 16493306-C-A **
5294390-C-A 5426349-C-A **
21023236-T-TC 18861350-T-TC P4_Dst **
10767663-T-A **
2909276-C-A 3041235-C-A **
22827483-AAT-A 20665597-AAT-A **
13258419-T-G 11102743-T-G **
20104132-G-T 17992252-G-T P5_Dst **
4866647-G-T 4998606-G-T **
21187133-C-A 19025247-C-A **
10924709-A-G **
10828267-C-A **
15480391-C-A 13368511-C-A **
7436313-C-A 7568272-C-A **
15057738-ATTTT-A 12945830-ATTTT-A 18×T**
17054898-C-CAT 14943018-C-CAT **
10686705-C-G **
22827495-AAAG-A 20665609-AAAG-A **
10795244-C-T **
13258443-G-T 11102767-G-T **
7409490-C-A 7541449-C-A **
56845150-C-G **
56845105-T-C **
10924719-A-AC **
56845135-A-G **
14371331-C-A 12250627-C-A **
27540920-AC-A 25394773-AC-A P1_Y2 **
15436097-G-GTT 13324217-G-GTT 13×T**
10767715-C-T **
7670976-C-A 7802935-C-A **
14584502-C-A 12472702-C-A **
10785791-C-A **
17014761-C-A 14902881-C-A **
22577922-G-T 20416036-G-T **
28650041-C-A 26503894-C-A **
19088568-C-A 16976688-C-A **
23373535-C-A 21211649-C-A **
14388607-ATTT-A 12267903-ATTT-A 8×T**
13811162-T-C 11690456-T-C **
11033123-C-A **
16183977-C-A 14072097-C-A **
22727299-C-A 20565413-C-A **
4302178-C-A 4434137-C-A **
10750697-A-G **
10750674-A-G **
10750664-A-C **
23801945-C-A 21640059-C-A **
10924713-C-A **
10924711-G-A **
16196223-C-A 14084343-C-A **
17050133-C-A 14938253-C-A **
10868567-C-A **
21583766-C-A 19421880-C-A **
20446462-G-GT 18284576-G-GT P5_Dst **
22999093-A-G 20837207-A-G **
4969366-C-A 5101325-C-A **
18717722-C-A 16605842-C-A **
10750699-T-A **
14324922-A-T 12204216-A-T **
10767717-G-A **
10870651-C-A **
10925484-C-A **
23045429-C-A 20883543-C-A **
10929174-C-CAAT **
10750706-G-C **
23119136-T-C 20957250-T-C **
23200548-G-A 21038662-G-A **
23232230-C-A 21070344-C-A **
13324787-C-A 11169111-C-A **
15048489-G-GTT 12936580-G-GTT 19×T**
10661580-A-T **
4874308-C-A 5006267-C-A **
19313648-C-A 17201768-C-A **
10750713-G-C **
22903692-G-A 20741806-G-A **
10784014-C-A **
22834617-AATACAG-A 20672731-AATACAG-A **
6787085-C-A 6919044-C-A **
7724536-C-A 7856495-C-A **
13811188-G-C 11690482-G-C **
10686703-T-C **
11010061-C-A **
15059852-A-G 12947944-A-G **
6720532-C-A 6852491-C-A **
22850308-C-A 20688422-C-A **
10750727-T-A **
3272541-G-T 3404500-G-T **
9596493-A-ATT 9758884-A-ATT IR3_Prx 12×TG**
17885842-G-T 15773962-G-T **
23261558-A-C 21099672-A-C **
11031231-C-A **
15411308-CAAA-C 13299428-CAAA-C 30×A**
10750733-C-T **
10788676-C-T **
5275547-G-T 5407506-G-T **
10970664-C-A **
24495113-C-A 22348966-C-A ***
22734868-C-A 20572982-C-A ***
23808356-C-A 21646470-C-A ***
22835236-T-G 20673350-T-G ***
23232309-C-A 21070423-C-A ***
21029910-G-A 18868024-G-A P4_Dst ***
23142743-G-A 20980857-G-A ***
23381839-G-T 21219953-G-T ***
21873363-G-C 19711477-G-C ***
21174420-C-A 19012534-C-A ***
21104741-G-A 18942855-G-A ***
21591161-C-A 19429275-C-A ***
24494065-A-G 22347918-A-G ***
21259335-C-A 19097449-C-A ***
28763706-CTAAAATCTCAA-C 26617559-CTAAAATCTCAA-C ***
21560200-A-G 19398314-A-G ***
22520379-C-A 20358493-C-A ***
23622667-C-A 21460781-C-A ***
9771941-T-A 9934332-T-A A13510 ***
19332632-C-CTT 17220752-C-CTT 13×T***
17564912-GAA-G,GA 15453032-GAA-G,GA 16×A***
10912549-C-A ***
56828724-C-T ***
23622765-C-A 21460879-C-A ***
18831473-C-A 16719593-C-A ***
9996654-C-A 10159045-C-A ***
13212639-C-A 11056963-C-A ***
17152032-C-A 15040152-C-A ***
2784671-C-A 2916630-C-A ***
15588715-CAA-C,CA 13476835-CAA-C,CA 14×A***
19472655-C-A 17360775-C-A ***
23807613-C-A 21645727-C-A ***
28510806-C-A 26364659-C-A ***
7241827-G-T 7373786-G-T ***
10958354-C-A ***
18762341-C-A 16650461-C-A ***
15129750-T-C 13017837-T-C ***
17515584-TA-T,TAA 15403704-TA-T,TAA 17×A***
15876535-TA-T,TAA 13764655-TA-T,TAA 15×A***
23439961-T-A 21278075-T-A ***
15315416-C-A 13203521-C-A ***
13461076-G-T 11305400-G-T ***
6741839-T-TA 6873798-T-TA 11×A***
7421884-TA-T 7553843-TA-T 10×A***
22601716-C-A 20439830-C-A ***
22727125-GA-G 20565239-GA-G 11×A***
13488652-C-T 11332976-C-T ***
21487036-T-TA 19325150-T-TA 8×A***
21995953-C-CT 19834067-C-CT 11×T***
13461089-T-G 11305413-T-G ***
10807250-C-T ***
10677405-C-A ***
10657270-C-T ***
22505754-C-A 20343868-C-A BY160765 DYZ19 ***
13462342-A-T 11306666-A-T ***
13462348-C-G 11306672-C-G ***
10780612-C-T ***
10780661-A-T ***
10946849-C-A ***
21927299-C-A 19765413-C-A ***
7990778-C-A 8122737-C-A ***
10757282-C-A ***
18963708-C-A 16851828-C-A ***
16028871-A-G 13916991-A-G ***
14080456-CT-C 11959750-CT-C ***
14272734-C-T 12152028-C-T ***
14888351-A-G 12776417-A-G ***
15114020-C-A 13002107-C-A ***
15264633-A-C 13152723-A-C ***
15507478-C-A 13395598-C-A ***
15676902-A-G 13565022-A-G ***
15737673-C-A 13625793-C-A ***
16441955-ATCTC-A,ATC 14330075-ATCTC-A,ATC 8×TC***
13722816-T-G 11567140-T-G ***
16476437-C-A 14364557-C-A ***
16777159-C-A 14665279-C-A ***
16991073-G-GTT 14879193-G-GTT 13×T***
17190221-C-A 15078341-C-A ***
17195289-C-A 15083409-C-A ***
17853682-GA-G 15741802-GA-G ***
18169720-C-A 16057840-C-A ***
18173981-C-A 16062101-C-A ***
13991967-C-A 11871261-C-A ***
9937160-G-T 10099551-G-T ***
22146188-G-GTT 19984302-G-GTT 13×T***
2907343-C-A 3039302-C-A ***
13481007-C-A 11325331-C-A ***
10992716-C-A ***
10789371-A-G ***
8290080-G-A 8422039-G-A ***
15792619-C-A 13680739-C-A ***
27860755-G-T 25714608-G-T P1_Y2 ***
2810977-T-C 2942936-T-C ***
2848338-G-A 2980297-G-A ***
4103357-C-A 4235316-C-A ***
9504509-T-C 9666900-T-C ***
4174703-C-A 4306662-C-A ***
4919241-G-T 5051200-G-T ***
7205524-C-A 7337483-C-A ***
7237515-C-A 7369474-C-A ***
7246263-C-T 7378222-C-T ***
7349517-C-A 7481476-C-A ***
8706728-C-A 8838687-C-A ***
9139026-GTATCTTCAGGC-G 9301417-GTATCTTCAGGC-G ***
56884376-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 319528870114171425067087829
Used in age calculations870114171425067087829
Counts of SNPs119
Variant counts last updated 2019-09-10 00:14:31.



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