Simpson

BigY2: 189101
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > FGC23764

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
189101
26030977-C-CA 23884830-C-CA P1_Y1 9×AA*
6150757-G-T 6282716-G-T IR3_Dst A*
21504024-G-T 19342138-G-T YYA*
19943293-T-C 17831413-T-C P5_Prx A*
17458538-TAAAC-T 15346658-TAAAC-T 4×AAAC+
22646054-A-C 20484168-A-C BY139707 YY+
19536742-T-C 17424862-T-C BY129884 YY+
17138749-C-T 15026869-C-T BY112583 YY+
17559391-T-A 15447511-T-A BY115716 YY+
13456255-T-A,C 11300579-T-A,C *
22441470-C-G 20279584-C-G DYZ19 *
22298526-C-A 20136640-C-A DYZ19 *
13289970-C-A 11134294-C-A **
13271670-G-T 11115994-G-T **
13234438-C-A 11078762-C-A **
13228847-C-A 11073171-C-A **
13217466-C-T 11061790-C-T **
13197760-C-A 11042084-C-A **
13194002-C-A 11038326-C-A **
10997215-A-C **
10996605-C-CACTCTGT **
10914741-T-C **
13298097-T-C 11142421-T-C **
10914732-G-C **
13298105-A-C 11142429-A-C **
10914707-A-C **
13238377-C-G 11082701-C-G **
10864476-C-T **
10868060-C-G **
10763226-C-T **
10669522-TCC-T **
10669528-C-CTG **
10671302-G-A **
10671368-T-A **
10693321-C-A **
10748127-T-C **
10748152-A-T **
10757087-C-T **
10759138-CTGCAT-C **
10759175-C-CCCCTA **
10776252-C-A **
13309227-T-C 11153551-T-C **
10784442-A-T **
10785000-C-A **
10807764-C-A **
10812360-C-A **
10815326-C-A **
10825279-C-A **
10825295-C-CGGGTTA **
10825714-CT-C **
10834368-T-G **
10851106-A-T **
10860336-C-A **
13298219-T-C 11142543-T-C **
13473751-A-G 11318075-A-G **
13394824-T-A 11239148-T-A **
14350154-G-T 12229449-G-T **
14076677-T-A 11955971-T-A **
14141997-A-C 12021291-A-C **
14175062-G-T 12054356-G-T **
14178526-G-T 12057820-G-T **
14213178-T-A 12092472-T-A **
14268371-C-A 12147665-C-A **
14300191-G-T 12179485-G-T **
14314255-T-G 12193549-T-G **
14350142-T-G 12229437-T-G **
14373835-T-C 12253131-T-C **
14054211-G-A 11933505-G-A **
14512494-C-G 12400699-C-G **
14517769-G-T 12405970-G-T **
14541867-C-A 12430068-C-A **
14573083-T-G 12461283-T-G **
14596897-G-T 12485097-G-T **
14622171-C-T 12510369-C-T **
14700733-C-A 12588799-C-A **
14715462-A-T 12603529-A-T **
14716686-C-A 12604754-C-A **
14073465-T-A 11952759-T-A **
14046590-A-C 11925884-A-C **
13394986-C-A 11239310-C-A **
11674375-C-A **
13434210-C-A 11278534-C-A **
13473760-A-T 11318084-A-T **
13473762-C-T 11318086-C-T **
13473773-G-A 11318097-G-A **
13498946-G-T 11343270-G-T **
13514849-T-G 11359173-T-G **
13611855-TA-T 11456179-TA-T **
13617108-A-G 11461432-A-G **
13709498-A-C 11553822-A-C **
11676614-C-G **
14029429-C-G 11908723-C-G **
13811169-G-A 11690463-G-A **
13811170-A-C 11690464-A-C **
13848268-G-C 11727562-G-C **
13865593-T-C 11744887-T-C **
13919227-A-ATC 11798521-A-ATC **
13971499-C-G 11850793-C-G **
13975765-T-G 11855059-T-G **
13975817-C-A 11855111-C-A **
14020287-C-A 11899581-C-A **
14021383-C-T 11900677-C-T **
10669469-C-A **
10075505-C-A 10237896-C-A **
10669450-A-ACTGATTTGCG **
6780705-T-G 6912664-T-G **
5988733-C-A 6120692-C-A **
6085987-C-A 6217946-C-A **
6096322-C-A 6228281-C-A **
6177462-C-G 6309421-C-G IR3_Dst **
6305835-C-A 6437794-C-A IR3_Dst **
6510373-T-G 6642332-T-G **
6593631-A-G 6725590-A-G **
6606441-A-T 6738400-A-T **
6715114-C-A 6847073-C-A **
6791731-T-G 6923690-T-G **
5907840-C-A 6039799-C-A **
6830645-T-G 6962604-T-G **
6831934-T-A 6963893-T-A **
6855526-C-A 6987485-C-A **
6978146-T-C 7110105-T-C **
7078330-G-C 7210289-G-C **
7108428-G-T 7240387-G-T **
7111089-G-T 7243048-G-T **
7111094-G-C 7243053-G-C **
7132047-G-T 7264006-G-T **
5937387-G-C 6069346-G-C **
5795310-T-C 5927269-T-C **
7154933-A-G 7286892-A-G **
5257102-T-C 5389061-T-C **
4957635-G-A 5089594-G-A **
4960583-C-G 5092542-C-G **
4996970-G-T 5128929-G-T **
5039407-A-T 5171366-A-T **
5039434-C-G 5171393-C-G **
5189621-A-T 5321580-A-T **
5189653-T-C 5321612-T-C **
5215743-T-A 5347702-T-A **
5256785-C-A 5388744-C-A **
5419574-G-T 5551533-G-T **
5795274-A-T 5927233-A-T **
5454475-C-T 5586434-C-T **
5454478-A-T 5586437-A-T **
5454548-T-A 5586507-T-A **
5454624-T-A 5586583-T-A **
5576711-A-T 5708670-A-T **
5663235-T-G 5795194-T-G **
5768295-C-A 5900254-C-A **
5795233-T-G 5927192-T-G **
5795254-T-C 5927213-T-C **
7146117-C-A 7278076-C-A **
7154939-A-T 7286898-A-T **
10665395-C-A **
9938448-T-C 10100839-T-C **
8281604-T-G 8413563-T-G **
8735001-A-T 8866960-A-T **
8736601-G-T 8868560-G-T **
9056501-A-G **
9125479-C-A **
9094575-A-C 9256966-A-C **
9461884-A-T 9624275-A-T **
9727610-T-G 9890001-T-G IR3_Prx **
9769179-A-T 9931570-A-T **
9946295-G-A 10108686-G-A **
8214261-G-A 8346220-G-A **
9999346-T-C 10161737-T-C **
9999402-T-A 10161793-T-A **
10006120-G-T 10168511-G-T **
10019847-T-C 10182238-T-C **
10033042-C-T 10195433-C-T **
10075410-G-T 10237801-G-T **
14720449-A-G 12608517-A-G **
10632583-C-A **
10653548-C-A **
8238274-C-A 8370233-C-A **
8166687-G-A 8298646-G-A **
7162509-A-T 7294468-A-T **
7623514-C-A 7755473-C-A **
7222039-A-G 7353998-A-G **
7259115-A-C 7391074-A-C **
7305749-A-G 7437708-A-G **
7353506-G-T 7485465-G-T **
7409791-C-T 7541750-C-T **
7409793-G-GC 7541752-G-GC **
7413024-C-A 7544983-C-A **
7426683-A-G 7558642-A-G **
7534545-A-T 7666504-A-T **
7649227-G-C 7781186-G-C **
8154174-C-A 8286133-C-A **
7681849-C-A 7813808-C-A **
7690053-G-T 7822012-G-T **
7705621-G-T 7837580-G-T **
7713443-C-A 7845402-C-A **
7828990-G-C 7960949-G-C **
7897090-C-A 8029049-C-A **
8051928-C-A 8183887-C-A **
8062558-A-G 8194517-A-G **
8154151-G-A 8286110-G-A **
14720248-T-C 12608316-T-C **
14886376-G-A 12774442-G-A **
14720472-A-G 12608540-A-G **
22210525-T-A 20048639-T-A **
21669090-C-T 19507204-C-T **
21795542-G-T 19633656-G-T **
21885871-G-A 19723985-G-A **
21993756-C-A 19831870-C-A **
22001810-C-A 19839924-C-A **
22073939-C-A 19912053-C-A **
22077020-T-G 19915134-T-G **
22188916-A-C 20027030-A-C **
22210591-T-A 20048705-T-A **
21526919-A-G 19365033-A-G **
22229545-G-A 20067659-G-A DYZ19 **
22240760-C-A 20078874-C-A DYZ19 **
22432218-G-T 20270332-G-T BY218054 DYZ19 **
22563034-GT-G 20401148-GT-G **
22587053-A-C 20425167-A-C **
22774907-C-T 20613021-C-T **
22774929-A-T 20613043-A-T **
22775086-T-C 20613200-T-C **
22864505-G-A 20702619-G-A **
21634136-T-C 19472250-T-C **
21455936-G-A 19294050-G-A **
22997902-C-A 20836016-C-A **
20886780-A-AG 18724894-A-AG P4_Dst **
19678819-C-T 17566939-C-T P5_Prx 15×T**
19812941-G-A 17701061-G-A P5_Prx **
20019153-G-T 17907273-G-T P5_Prx **
20050893-G-A 17939013-G-A P5_Prx **
20197518-A-G 18035632-A-G P5_Dst **
20352263-G-A 18190377-G-A P5_Dst **
20463464-A-ATTCT 18301578-A-ATTCT P5_Dst **
20838930-T-C 18677044-T-C P4_Gap **
20886777-AGT-A 18724891-AGT-A P4_Dst **
20927083-C-T 18765197-C-T P4_Dst **
21283350-G-A 19121464-G-A **
21116897-A-C 18955011-A-C **
21148417-C-A 18986531-C-A **
21206874-T-A 19044988-T-A **
21211220-A-T 19049334-A-T **
21242358-G-T 19080472-G-T **
21246132-T-A 19084246-T-A **
21280738-C-A 19118852-C-A **
21281600-T-G 19119714-T-G **
21281621-G-T 19119735-G-T **
22950330-G-T 20788444-G-T **
23098176-G-A 20936290-G-A **
19622117-C-A 17510237-C-A P5_Prx **
28530712-A-C 26384565-A-C **
27595951-C-A 25449804-C-A P1_Y2 **
27763413-A-AG 25617266-A-AG P1_Y2 **
27929520-T-G 25783373-T-G P1_Y2 **
28033042-G-T 25886895-G-T P1_Y2 **
28253470-T-G 26107323-T-G P1_b4 **
28253484-T-C 26107337-T-C P1_b4 **
28253488-T-A 26107341-T-A P1_b4 **
28460475-A-G 26314328-A-G **
28484823-T-G 26338676-T-G **
28532584-T-C 26386437-T-C **
27467340-A-C 25321193-A-C P1_Y2 **
28614671-G-T 26468524-G-T **
28617713-G-T 26471566-G-T **
28660064-C-A 26513917-C-A **
28667221-A-C 26521074-A-C **
28711534-G-A 26565387-G-A **
28756250-A-G 26610103-A-G **
28772248-T-A 26626101-T-A **
28787964-A-C 26641817-A-C **
56848608-T-A **
27570839-T-G 25424692-T-G P1_Y2 **
26781027-A-G 24634880-A-G P1_g2 **
23449913-T-C 21288027-T-C **
24587878-A-T 22441731-A-T P3_t2 **
23777744-G-C 21615858-G-C **
23808836-G-A 21646950-G-A **
23961285-C-A 21815138-C-A **
24283324-T-G 22137177-T-G P3_t1 **
24378497-T-C 22232350-T-C **
24458734-G-T 22312587-G-T **
24458740-G-T 22312593-G-T **
24553421-T-C 22407274-T-C P3_t2 **
24553424-A-T 22407277-A-T P3_t2 **
24595340-A-G 22449193-A-G P3_t2 **
26379419-A-AG 24233272-A-AG P1_Y1 **
24604697-A-G 22458550-A-G P3_t2 11×T**
24604700-T-TAG 22458553-T-TAG P3_t2 **
24614127-T-A 22467980-T-A P3_t2 **
24634018-G-A 22487871-G-A P3_t2 **
24634161-T-A 22488014-T-A P3_t2 **
24889810-G-C 22743663-G-C g1 **
25030340-C-A 22884193-C-A g1 **
26377859-C-A 24231712-C-A P1_Y1 **
26379412-A-AGAG 24233265-A-AGAG P1_Y1 **
19678817-G-T 17566937-G-T P5_Prx **
19599103-A-AAC 17487223-A-AAC P5_Prx **
14776830-C-G 12664899-C-G **
16395622-A-G 14283742-A-G **
15952057-C-A 13840177-C-A **
16046294-C-A 13934414-C-A **
16049925-C-T 13938045-C-T **
16049928-T-C 13938048-T-C **
16056162-T-G 13944282-T-G **
16246127-C-G 14134247-C-G **
16246165-T-A 14134285-T-A **
16312407-C-G 14200527-C-G **
16405461-G-C 14293581-G-C **
15916656-G-A 13804776-G-A **
16427530-C-A 14315650-C-A **
16474630-G-A 14362750-G-A **
16505049-G-T 14393169-G-T **
16520959-C-T 14409079-C-T **
16602835-G-T 14490955-G-T **
17083163-G-T 14971283-G-T **
17115103-C-A 15003223-C-A **
17146468-C-A 15034588-C-A **
17212453-A-G 15100573-A-G **
15927911-A-G 13816031-A-G **
15753170-C-T 13641290-C-T **
17276220-GT-G 15164340-GT-G **
15341949-T-G 13230068-T-G **
14776831-A-C 12664900-A-C **
14788052-C-A 12676123-C-A **
14793183-C-A 12681254-C-A **
4861194-C-A 4993153-C-A **
14933777-C-A 12821842-C-A **
15084638-G-A 12972728-G-A **
15115261-C-A 13003348-C-A **
15193710-T-A 13081796-T-A **
15247530-A-T 13135616-A-T **
15423945-C-A 13312065-C-A **
15734370-T-G 13622490-T-G **
15423946-A-C 13312066-A-C **
15452201-CAGAAA-C 13340321-CAGAAA-C **
15480328-C-A 13368448-C-A **
15653322-C-A 13541442-C-A **
15679684-A-C 13567804-A-C **
15684179-T-C 13572299-T-C **
15688493-A-T 13576613-A-T **
15688945-A-G 13577065-A-G **
15712283-G-A 13600403-G-A **
17231423-C-G 15119543-C-G **
17310001-G-A 15198121-G-A **
19599081-C-A 17487201-C-A P5_Prx **
18950670-G-T 16838790-G-T **
18274926-G-A 16163046-G-A P6_Prx **
18274938-ATG-A 16163058-ATG-A P6_Prx **
18336110-C-G 16224230-C-G P6_Prx **
18429211-AAAC-T 16317331-AAAC-T P6_Dst **
18736523-G-A 16624643-G-A **
18763654-C-A 16651774-C-A **
18841147-A-G 16729267-A-G **
18863888-C-A 16752008-C-A **
18890518-A-T 16778638-A-T **
18969359-C-A 16857479-C-A **
18206728-C-A 16094848-C-A FGC19103 **
19007803-C-G 16895923-C-G **
19184642-A-G 17072762-A-G **
19200905-C-A 17089025-C-A **
19216622-T-G 17104742-T-G **
19285195-GT-G 17173315-GT-G **
19339458-T-A 17227578-T-A **
19415630-C-A 17303750-C-A **
19429519-C-A 17317639-C-A **
19532877-C-G 17420997-C-G **
18218807-G-A 16106927-G-A **
18197833-C-A 16085953-C-A **
17310013-G-A 15198133-G-A **
17779512-T-G 15667632-T-G **
17347527-C-A 15235647-C-A **
17387389-A-C 15275509-A-C **
17425045-T-C 15313165-T-C **
17480051-T-G 15368171-T-G **
17549675-T-G 15437795-T-G **
17560663-A-G 15448783-A-G **
17575516-T-C 15463636-T-C **
17703321-G-A 15591441-G-A FGC23767 **
17749309-A-C 15637429-A-C **
17779513-A-C 15667633-A-C **
18185528-T-A 16073648-T-A **
17840796-C-A 15728916-C-A **
17862689-G-A 15750809-G-A **
17884704-G-C 15772824-G-C **
17923617-GGAAA-G 15811737-GGAAA-G **
17951614-G-A 15839734-G-A BY170676 **
18008654-T-C 15896774-T-C P7_Dst **
18071525-A-G 15959645-A-G **
18085720-G-T 15973840-G-T FGC23768 **
18174599-A-C 16062719-A-C **
4889386-TG-T 5021345-TG-T **
5455348-C-CT 5587307-C-CT **
4836640-A-C 4968599-A-C **
11013212-C-G **
6756887-T-A 6888846-T-A **
18071902-C-A 15960022-C-A **
18990264-C-A 16878384-C-A **
25521008-A-C 23374861-A-C P1_gr1 **
25524746-C-T 23378599-C-T P1_gr1 **
7201596-C-A 7333555-C-A **
7270317-T-C 7402276-T-C **
19246178-C-A 17134298-C-A **
13217461-A-G 11061785-A-G **
25246439-T-C 23100292-T-C P2_r1 **
13394819-A-G 11239143-A-G **
16362349-C-A 14250469-C-A **
10935501-C-A **
18346540-C-T 16234660-C-T P6_Prx **
20050964-T-TG 17939084-T-TG P5_Prx **
13573396-C-A 11417720-C-A **
10796103-A-T **
10796108-A-G **
19187414-GCA-G 17075534-GCA-G **
5782016-C-A 5913975-C-A **
20632504-A-AG 18470618-A-AG P4_Prx **
11018272-C-A **
10669504-C-T **
11003744-A-C **
13604774-C-A 11449098-C-A **
5560073-C-A 5692032-C-A **
9540246-CTTTT-C 9702637-CTTTT-C IR3_Prx 18×T**
21774599-A-C **
21774681-T-G **
21617746-T-A 19455860-T-A **
22079709-C-A 19917823-C-A **
7044388-C-A 7176347-C-A **
13510617-C-A 11354941-C-A **
15452565-T-A 13340685-T-A **
19517280-C-A 17405400-C-A **
16291846-C-A 14179966-C-A **
3728054-C-A 3860013-C-A **
19290345-C-A 17178465-C-A **
6756907-TCAA-T 6888866-TCAA-T **
15974412-C-A 13862532-C-A **
8172722-C-T 8304681-C-T **
21945403-C-A 19783517-C-A **
28033130-A-AC 25886983-A-AC P1_Y2 **
10869809-C-A **
28788040-A-ATGGAG 26641893-A-ATGGAG **
15803641-T-G 13691761-T-G **
10693343-T-C **
20019187-T-TA 17907307-T-TA P5_Prx **
10770505-T-TTTTATTCCGC **
10770525-T-G **
10770537-C-G **
14698458-CAAAAA-C 12586524-CAAAAA-C 19×A**
17337680-C-A 15225800-C-A **
18615959-TG-T 16504079-TG-T **
14352016-C-A 12231311-C-A **
15238887-C-A 13126973-C-A **
10925405-G-T **
10925431-T-C **
10925432-T-A **
10925441-G-C **
10925442-T-C **
10925453-C-CTATTT **
10925470-A-G **
10925484-C-CATTAA **
10925499-C-A **
5215844-A-G 5347803-A-G **
21713438-TAAAAA-T 19551552-TAAAAA-T 16×A**
13922534-C-A 11801828-C-A **
28581846-C-A 26435699-C-A **
10925453-C-A **
7704809-C-A 7836768-C-A **
14911819-C-A 12799886-C-A **
14235986-C-A 12115280-C-A **
23209742-C-A 21047856-C-A **
16612724-C-A 14500844-C-A **
13254498-C-A 11098822-C-A **
9423032-C-T 9585423-C-T **
10895872-A-T **
4836637-A-G 4968596-A-G **
23898947-T-TC 21737061-T-TC **
14910783-G-T 12798850-G-T **
16233511-C-A 14121631-C-A **
10754964-T-G **
13919235-A-T 11798529-A-T **
21346277-C-A 19184391-C-A **
19745038-G-T 17633158-G-T P5_Prx **
13217484-A-G 11061808-A-G **
16750116-C-A 14638236-C-A **
13217488-A-G 11061812-A-G **
10914744-C-G **
20927101-T-TC 18765215-T-TC P4_Dst **
15556737-C-A 13444857-C-A **
19678833-T-A 17566953-T-A P5_Prx **
14021446-C-A 11900740-C-A **
13487742-CT-G 11332066-CT-G **
7414275-C-A 7546234-C-A **
2785953-T-A 2917912-T-A **
5293918-AT-A 5425877-AT-A 10×T**
10980169-G-C **
28787995-A-G 26641848-A-G **
3732021-C-A 3863980-C-A **
5937242-C-CTATA 6069201-C-CTATA 18×TA**
18244625-C-A 16132745-C-A **
4420418-CTT-C 4552377-CTT-C 13×T**
56846263-C-A **
56846268-G-A **
13457687-A-T 11302011-A-T **
19535527-C-T 17423647-C-T **
10673439-C-A **
18346541-C-G 16234661-C-G P6_Prx **
4409081-AT-A 4541040-AT-A 12×T**
9540269-C-T 9702660-C-T IR3_Prx **
58981368-C-CTCCAT 56835221-C-CTCCAT **
10982608-T-G **
58827354-C-G 56763517-G-C **
8094452-G-GTA 8226411-G-GTA **
13514851-G-A 11359175-G-A **
13473794-C-G 11318118-C-G **
13514836-A-C 11359160-A-C **
13611854-G-T 11456178-G-T **
7123690-C-A 7255649-C-A **
17481192-C-A 15369312-C-A **
4271315-C-A 4403274-C-A **
13473740-G-A 11318064-G-A **
28253491-C-A 26107344-C-A P1_b4 32×A**
16308153-ATG-A 14196273-ATG-A **
9900370-TA-T 10062761-TA-T 8×A**
24910853-C-CATATAT 22764706-C-CATATAT g1 26×AT**
3093642-C-A 3225601-C-A **
14627027-C-A 12515095-C-A **
17802156-T-A 15690276-T-A **
6756895-T-G 6888854-T-G **
22244019-T-C 20082133-T-C DYZ19 **
58983611-C-A 56837464-C-A **
10982600-C-T **
14379355-A-G 12258651-A-G **
11013244-A-T **
6920786-C-A 7052745-C-A **
2649789-C-G 2781748-C-G **
13811099-G-A 11690393-G-A **
3439960-C-A 3571919-C-A **
8776621-C-A 8908580-C-A **
15574750-C-A 13462870-C-A **
23420616-C-A 21258730-C-A **
10925439-G-C **
22176798-C-A 20014912-C-A **
10658442-C-A **
14077860-C-A 11957154-C-A **
7761209-C-A 7893168-C-A **
13833212-C-A 11712506-C-A **
6827884-C-A 6959843-C-A **
10671489-C-A **
4088323-C-A 4220282-C-A **
28788055-A-G 26641908-A-G **
21515857-CGT-C 19353971-CGT-C **
22520781-T-C 20358895-T-C **
11013228-C-T **
7422258-C-A 7554217-C-A **
10770608-C-T **
18274906-G-A 16163026-G-A P6_Prx **
21774753-T-C **
22167213-T-A 20005327-T-A **
10809620-A-T **
14270569-C-A 12149863-C-A **
18890493-A-G 16778613-A-G **
21464535-TC-T 19302649-TC-T **
10998028-A-C **
19745027-C-T 17633147-C-T P5_Prx **
21774630-A-G **
16309508-C-A 14197628-C-A **
10770607-C-T **
10984459-A-C **
4665794-C-A 4797753-C-A **
56845285-G-A **
3274232-C-A 3406191-C-A **
13564484-C-A 11408808-C-A **
17860715-C-A 15748835-C-A **
10925406-A-T **
22244051-A-T 20082165-A-T DYZ19 **
10770594-A-T **
10925518-C-T **
11010000-C-A **
56875471-C-A **
3584741-A-T 3716700-A-T **
10987954-C-A **
3673836-A-T 3805795-A-T **
14474532-C-A 12353801-C-A **
10895852-A-C **
3632126-G-T 3764085-G-T **
10895853-T-G **
10895867-A-T **
10802156-C-A **
10895881-C-T **
3416632-C-A 3548591-C-A **
28484886-C-A 26338739-C-A **
7225395-C-A 7357354-C-A **
4936999-C-A 5068958-C-A **
7541549-C-A 7673508-C-A **
23505146-C-A 21343260-C-A **
4262664-C-A 4394623-C-A **
3705409-A-C 3837368-A-C **
16040920-C-T 13929040-C-T **
10669527-T-G **
11003713-A-T **
19067950-C-A 16956070-C-A **
20197606-T-TA 18035720-T-TA P5_Dst **
2873887-GC-G 3005846-GC-G **
14314241-G-T 12193535-G-T **
9870116-T-C 10032507-T-C **
3812231-T-A 3944190-T-A **
3740956-G-T 3872915-G-T **
7255094-C-A 7387053-C-A **
14511433-C-A 12399638-C-A **
4678975-C-CA 4810934-C-CA 14×A**
24729748-G-T 22583601-G-T P3_b2 **
3728611-A-G 3860570-A-G **
21116893-C-A 18955007-C-A **
10996615-T-C **
13582867-C-A 11427191-C-A **
9778890-G-A 9941281-G-A **
3347039-A-C 3478998-A-C **
14716642-C-A 12604710-C-A **
2970808-A-T 3102767-A-T **
3101792-C-A 3233751-C-A **
3092012-T-G 3223971-T-G **
2696617-G-T 2828576-G-T **
4533632-C-A 4665591-C-A **
15454964-C-A 13343084-C-A **
16688423-G-T 14576543-G-T **
10828184-T-A **
10694174-G-T **
4322441-G-T 4454400-G-T **
18154617-G-A 16042737-G-A **
2915155-C-A 3047114-C-A **
2665424-T-C 2797383-T-C **
2901552-C-A 3033511-C-A **
2752638-A-C 2884597-A-C **
2766799-C-A 2898758-C-A **
2810450-TA-T 2942409-TA-T **
8238350-C-A 8370309-C-A **
3116547-T-C 3248506-T-C **
13939687-C-A 11818981-C-A **
14076687-C-A 11955981-C-A **
13468905-C-A 11313229-C-A **
3722151-G-T 3854110-G-T **
18249861-C-A 16137981-C-A **
16786207-T-C 14674327-T-C **
3332083-T-A 3464042-T-A **
10759801-A-AGTACCCTCCT **
10825294-C-CTATT **
25524741-C-T 23378594-C-T P1_gr1 **
18354441-C-A 16242561-C-A P6_Prx **
56742659-A-G **
3307383-A-G 3439342-A-G **
56728117-G-A **
21584233-A-G 19422347-A-G **
23395854-G-T 21233968-G-T **
10759133-T-G **
3158924-G-T 3290883-G-T **
10851115-A-T **
16876977-C-A 14765097-C-A **
18125464-C-A 16013584-C-A Y101394 **
18274912-G-A 16163032-G-A P6_Prx **
16018876-C-A 13906996-C-A **
17244278-G-T 15132398-G-T **
4272512-T-C 4404471-T-C **
6948270-C-T 7080229-C-T **
13453223-C-G 11297547-C-G **
13453224-C-A 11297548-C-A **
4175225-C-A 4307184-C-A **
4309103-G-T 4441062-G-T **
4122516-C-A 4254475-C-A **
4119348-G-T 4251307-G-T **
10851009-C-T **
10759160-C-T **
3815042-C-G 3947001-C-G **
26043744-A-T 23897597-A-T P1_Y1 **
4094615-A-C 4226574-A-C **
17788988-C-A 15677108-C-A **
4364991-G-T 4496950-G-T **
21945421-C-A 19783535-C-A **
14831869-G-A 12719936-G-A **
4836592-C-A 4968551-C-A **
14354576-G-C 12233871-G-C **
14495662-C-A 12383859-C-A **
13962071-GA-T 11841365-GA-T **
15084657-C-A 12972747-C-A **
13811100-A-C 11690394-A-C **
4702764-G-C 4834723-G-C **
18263811-C-A 16151931-C-A **
23449217-G-T 21287331-G-T **
23137065-C-A 20975179-C-A **
5612746-C-A 5744705-C-A **
4384074-G-T 4516033-G-T **
15533726-T-A 13421846-T-A **
15533739-C-A 13421859-C-A **
26154006-G-T 24007859-G-T P1_Y1 **
10669559-A-G **
10759163-T-C **
4996106-C-A 5128065-C-A **
5215845-G-T 5347804-G-T **
7649119-C-A 7781078-C-A **
9991803-C-A 10154194-C-A **
3965334-G-T 4097293-G-T **
3887293-A-T 4019252-A-T **
13474822-C-A 11319146-C-A **
26314906-C-A 24168759-C-A P1_Y1 **
14379351-A-G 12258647-A-G **
9438069-C-A 9600460-C-A **
19479928-G-T 17368048-G-T **
6293397-C-T 6425356-C-T IR3_Dst **
5587121-G-T 5719080-G-T **
21553447-A-T 19391561-A-T **
10851017-C-T **
3873668-T-G 4005627-T-G **
3855242-A-G 3987201-A-G **
13473791-A-AT 11318115-A-AT **
17434171-C-A 15322291-C-A **
7413419-A-C 7545378-A-C **
18853612-C-A 16741732-C-A **
10914719-A-T **
6495120-C-A 6627079-C-A **
17170371-C-A 15058491-C-A **
4094501-T-C 4226460-T-C **
4066552-C-A 4198511-C-A **
4065276-T-G 4197235-T-G **
56834446-TCCCTTCCATTC-T ***
56742742-G-T ***
5358613-A-G 5490572-A-G ***
28787976-T-C 26641829-T-C ***
7418066-T-C 7550025-T-C Y38958 ***
22629552-G-C 20467666-G-C ***
3407758-A-T 3539717-A-T ***
13462098-T-A 11306422-T-A ***
28795297-G-A 26649150-G-A ***
3550572-CTC-A,CAC 3682531-CTC-A,CAC ***
14356890-CTT-C,CT 12236185-CTT-C,CT 17×T***
23522459-C-G 21360573-C-G ***
22165199-T-A 20003313-T-A ***
15882459-A-T 13770579-A-T ***
23450557-C-A 21288671-C-A ***
16478341-C-A 14366461-C-A ***
17907835-C-A 15795955-C-A ***
15882483-A-G 13770603-A-G ***
9100127-G-T 9262518-G-T ***
18160863-TGATG-T 16048983-TGATG-T 11×GATG***
15993683-A-G 13881803-A-G BY12313BY12338 ***
13489835-C-T 11334159-C-T ***
17960995-C-T 15849115-C-T ***
15975610-ATG-A 13863730-ATG-A ***
15829934-CT-C 13718054-CT-C FGC20775 10×T***
6582942-C-T 6714901-C-T ***
27713405-TCTTGA-T 25567258-TCTTGA-T P1_Y2 ***
3966983-T-C 4098942-T-C ***
6925058-C-T 7057017-C-T ***
16278700-C-A 14166820-C-A ***
8702843-A-T 8834802-A-T ***
14884619-A-G 12772685-A-G ***
17115190-G-T 15003310-G-T ***
13489833-A-T 11334157-A-T ***
16309571-C-CAA 14197691-C-CAA 17×A***
15183050-C-A 13071136-C-A ***
14453692-G-A 12332965-G-A ***
16595955-G-T 14484075-G-T ***
13212752-C-A 11057076-C-A ***
14065930-C-A 11945224-C-A ***
3279803-C-A 3411762-C-A ***
10888868-C-A ***
56826084-C-A,CTA ***
56826085-C-AAT ***
3131058-C-A 3263017-C-A ***
13219952-C-A 11064276-C-A ***
22010459-T-A 19848573-T-A ***
8078534-G-T 8210493-G-T ***
7938161-GAAAA-G,GAAA 8070120-GAAAA-G,GAAA 15×A***
56884277-G-T ***
13457824-T-C 11302148-T-C ***
15940305-TCAAA-T 13828425-TCAAA-T ***
13463569-A-G 11307893-A-G ***
14555821-C-A 12444022-C-A ***
13253975-A-C 11098299-A-C ***
13478775-G-A 11323099-G-A ***
13489452-C-A 11333776-C-A ***
22824947-A-T 20663061-A-T ***
13643084-T-A 11487408-T-A ***
7021926-C-A 7153885-C-A ***
13856608-G-T 11735902-G-T ***
13869154-G-GACAC 11748448-G-GACAC ***
13489811-A-G 11334135-A-G ***
17532412-C-A 15420532-C-A ***
18923961-C-A 16812081-C-A ***
21549226-G-T 19387340-G-T ***
6996509-A-G 7128468-A-G ***
6996545-G-A 7128504-G-A ***
2750796-G-T 2882755-G-T ***
7137039-A-G 7268998-A-G ***
16244792-GGTGTGTGT-G,GGT 14132912-GGTGTGTGT-G,GGT 16×GT***
9100129-C-T 9262520-C-T ***
7237314-G-A 7369273-G-A ***
14238412-CAAA-C 12117706-CAAA-C 12×A***
21211046-G-T 19049160-G-T ***
16862273-C-A 14750393-C-A ***
7427882-G-A 7559841-G-A ***
7538000-C-A 7669959-C-A ***
5022139-AC-A 5154098-AC-A ***
17533824-G-A 15421944-G-A 21×A***
7996469-C-A 8128428-C-A ***
13489827-A-T 11334151-A-T ***
9874182-G-T 10036573-G-T ***
13489829-G-C 11334153-G-C ***
17030940-C-A 14919060-C-A ***
16422362-C-A 14310482-C-A ***
9965199-G-T 10127590-G-T ***
10980744-C-A ***
9907532-A-G 10069923-A-G ***
9730364-C-A 9892755-C-A IR3_Prx ***
9420138-ATATTAT-A,ATAT 9582529-ATATTAT-A,ATAT 14×TAT***
6915835-C-T 7047794-C-T ***
8281795-T-A 8413754-T-A ***
9047947-G-T 9210338-G-T ***
9513025-C-A 9675416-C-A ***
19127250-G-T 17015370-G-T ***
19266684-A-G 17154804-A-G ***
8888402-C-T 9020361-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 189101942616576838327592437
Used in age calculations942616576838327592437
Counts of SNPs44
Variant counts last updated 2019-05-29 00:16:51.


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