Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > FGC15710 > CTS10029 > BY3190 > FGC29721 > FGC29724 > FGC33363

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
246892
FGC
ASVM9
5373302-A-G 5505261-A-G FGC33357 +
22463401-T-A 20301515-T-A BY221116 DYZ19 +**
14245278-A-G 12124572-A-G FGC33359 YY+
22798507-A-G 20636621-A-G FGC33364 Y+
17976669-G-A 15864789-G-A FGC33360 Y++
3688823-C-T 3820782-C-T FGC33356 **+
14026511-C-T 11905805-C-T FGC33358 YY++
26526565-T-TG 24380418-T-TG P1_Y1 *
28336668-C-CAAA 26190521-C-CAAA P1_b4 31×A**
13565410-T-C 11409734-T-C **
9932903-A-G 10095294-A-G **
19937234-C-A 17825354-C-A P5_Prx **
13565045-C-A 11409369-C-A **
20326007-C-CTTTTTTTT 18164121-C-CTTTTTTTT P5_Dst 29×T**
6133850-C-G 6265809-C-G **
13564989-G-C 11409313-G-C **
13544839-C-A 11389163-C-A **
13533504-T-A 11377828-T-A Y133088 **
13533486-A-G 11377810-A-G Y133094 **
13533485-C-T 11377809-C-T Y133086 **
13533402-C-G 11377726-C-G **
17463405-T-G 15351525-T-G Z6034 **
24235387-G-GTTTTTT 22089240-G-GTTTTTT P3_b1 29×T**
13508114-A-C 11352438-A-C **
13532875-CAAAAA-C 11377199-CAAAAA-C 13×A**
13469198-T-C 11313522-T-C **
13565341-T-G 11409665-T-G **
26563701-A-G 24417554-A-G ZS1732 P1_g2 **
10049023-G-C 10211414-G-C **
3483826-TACAC-T 3615785-TACAC-T 13×AC**
7656025-TA-T 7787984-TA-T 10×A**
22503307-G-T 20341421-G-T DYZ19 ***
22502657-G-T 20340771-G-T DYZ19 ***
22481668-A-G 20319782-A-G DYZ19 ***
22503315-A-T 20341429-A-T DYZ19 ***
22531998-C-A 20370112-C-A ***
22480731-G-A 20318845-G-A DYZ19 ***
22452554-C-T 20290668-C-T DYZ19 ***
22636178-C-G 20474292-C-G ***
23415340-A-T 21253454-A-T ***
24588345-C-A 22442198-C-A P3_t2 ***
25854868-T-A 23708721-T-A P1_Y1 ***
26040485-C-T 23894338-C-T P1_Y1 ***
26040500-G-T 23894353-G-T P1_Y1 ***
26207397-A-T 24061250-A-T P1_Y1 ***
26249438-T-A 24103291-T-A P1_Y1 ***
26262895-C-A 24116748-C-A P1_Y1 ***
26462026-A-T 24315879-A-T P1_Y1 ***
27517366-C-A 25371219-C-A P1_Y2 ***
27646081-G-A 25499934-G-A P1_Y2 ***
27676505-T-A 25530358-T-A P1_Y2 ***
28022807-G-C 25876660-G-C P1_Y2 ***
28022823-C-T 25876676-C-T P1_Y2 ***
58822034-C-G 56768837-G-C ***
58822043-A-T 56768828-T-A ***
22450153-A-C 20288267-A-C DYZ19 ***
22337606-C-A 20175720-C-A DYZ19 ***
22450016-C-G 20288130-C-G DYZ19 ***
20388703-C-T 18226817-C-T P5_Dst ***
20389058-G-A 18227172-G-A P5_Dst ***
20389045-T-C 18227159-T-C P5_Dst ***
20389034-C-T 18227148-C-T P5_Dst ***
20389030-T-A 18227144-T-A P5_Dst ***
20388728-G-A 18226842-G-A P5_Dst ***
20388708-T-A 18226822-T-A P5_Dst ***
20362799-A-T 18200913-A-T P5_Dst ***
20389074-A-T 18227188-A-T P5_Dst ***
20362762-T-A 18200876-T-A P5_Dst ***
20338110-T-A 18176224-T-A P5_Dst ***
19270480-T-C 17158600-T-C ***
18453204-G-A 16341324-G-A P6_Dst ***
18453202-T-C 16341322-T-C P6_Dst ***
18453197-G-A 16341317-G-A P6_Dst ***
20389072-T-A 18227186-T-A P5_Dst ***
20389088-G-T 18227202-G-T P5_Dst ***
22435757-G-C 20273871-G-C DYZ19 ***
58831542-C-A 56759329-G-T ***
22366938-G-A 20205052-G-A DYZ19 ***
22365810-C-T 20203924-C-T DYZ19 ***
22360576-G-T 20198690-G-T DYZ19 ***
22360090-A-C 20198204-A-C DYZ19 ***
22357668-T-A 20195782-T-A DYZ19 ***
22343853-G-T 20181967-G-T DYZ19 ***
22274109-A-G 20112223-A-G DYZ19 ***
20389089-A-T 18227203-A-T P5_Dst ***
22274098-G-T 20112212-G-T DYZ19 ***
22235080-A-C 20073194-A-C DYZ19 ***
22235054-G-A 20073168-G-A DYZ19 ***
20957703-G-T 18795817-G-T P4_Dst ***
20569015-G-T 18407129-G-T P5_Dst ***
20569008-G-A 18407122-G-A P5_Dst ***
20462569-G-C 18300683-G-C P5_Dst ***
58831538-T-A 56759333-A-T ***
58835806-C-T 56755065-G-A ***
58831581-T-C 56759290-A-G ***
13528196-TCAGC-CCAGT 11372520-TCAGC-CCAGT ***
17994850-TC-AA 15882970-TC-AA P7_Prx ***
15480111-ATTTTTT-A 13368231-ATTTTTT-A 21×T***
14657759-T-TAAAAAAA 12545824-T-TAAAAAAA 15×A***
14420787-C-CTTTTTT 12300062-C-CTTTTTT 18×T***
13842566-CAGAG-TGGAA 11721860-CAGAG-TGGAA ***
13540253-AACAC-A 11384577-AACAC-A 23×AC***
13535673-ATA-GTG 11379997-ATA-GTG ***
13508110-AGCTA-GGCTC 11352434-AGCTA-GGCTC ***
20648567-AAAAGGAAAGG-A 18486681-AAAAGGAAAGG-A P4_Prx 11×AAAGG***
13487533-AAGAA-CAGAC 11331857-AAGAA-CAGAC ***
13487523-GGG-TGA 11331847-GGG-TGA ***
13485086-GATA-TATC 11329410-GATA-TATC ***
13484727-ATCAA-GTCAC 11329051-ATCAA-GTCAC ***
13479204-CTCTG-ATCTT 11323528-CTCTG-ATCTT ***
13473563-ATGAGTG-TTCAGTA 11317887-ATGAGTG-TTCAGTA ***
13473535-GC-CT 11317859-GC-CT ***
13473522-TCTGTAG-CCTCTAA 11317846-TCTGTAG-CCTCTAA ***
20462571-GTATAAG-CT 18300685-GTATAAG-CT P5_Dst ***
21501086-A-ATTTTT 19339200-A-ATTTTT 37×T***
10031930-CGGCA-GGGCG 10194321-CGGCA-GGGCG ***
28633965-T-TA 26487818-T-TA 10×A***
58910210-TTT-AAA 56680659-AAA-TTT ***
58909168-GA-G 56681701-GT-G ***
58909162-TTAGC-T 56681704-CGCTA-C ***
58879434-GATTCCATTGCATTCC-G 56711413-GAATGGAATGGAATGC-G ***
58877094-CCATAG-C 56713768-AATGCT-A ***
58877065-C-TG 56713806-G-CA ***
58877059-AG-A 56713810-GC-G ***
58823383-CTCTATC-TTCCATT 56767482-GATAGAG-AATGGAA ***
28529232-C-CA 26383085-C-CA 23×A***
22235088-TACAA-CTAAG 20073202-TACAA-CTAAG DYZ19 ***
28491345-A-ACCCCCCCAAAAAAAAG 26345198-A-ACCCCCCCAAAAAAAAG ***
27519033-CCACCGATCCCAC-TTGCCTTT 25372886-CCACCGATCCCAC-TTGCCTTT P1_Y2 ***
27519006-CAATAAAAAATTATAAAGGGGATA-GAGTGATAATTTTTTAACTAAAT 25372859-CAATAAAAAATTATAAAGGGGATA-GAGTGATAATTTTTTAACTAAAT P1_Y2 ***
25207889-CAAAG-AAAAA 23061742-CAAAG-AAAAA P2_r1 ***
23702223-GT-G 21540337-GT-G 14×T***
22739716-C-CAAAAAAAA 20577830-C-CAAAAAAAA 24×A***
22499115-GTCTT-TTCTA 20337229-GTCTT-TTCTA DYZ19 ***
22292677-AT-GC 20130791-AT-GC DYZ19 ***
13140123-TCGC-T 10629609-TCGC-T ***
9390695-ATGT-A 9553086-ATGT-A ***
58834677-G-C 56756194-C-G ***
58851743-C-A 56739128-G-T ***
58867402-A-T 56723469-T-A ***
58867401-G-T 56723470-C-A ***
58867396-C-A 56723475-G-T ***
58867388-G-T 56723483-C-A ***
58867381-C-T 56723490-G-A ***
58851936-T-C 56738935-A-G ***
58851781-T-C 56739090-A-G ***
58851732-A-T 56739139-T-A ***
58867687-C-A 56723184-G-T ***
58848626-G-A 56742245-C-T ***
58848622-T-C 56742249-A-G ***
58843242-T-G 56747629-A-C ***
58836459-T-A 56754412-A-T ***
58835896-C-T 56754975-G-A ***
13704721-C-A 11549045-C-A ***
58835804-T-A 56755067-A-T ***
58835800-A-T 56755071-T-A ***
58867403-G-T 56723468-C-A ***
58868189-C-T 56722682-G-A ***
2903272-TTCCT-C 3035231-TTCCT-C ***
58908589-T-G 56682282-A-C ***
15791505-GAT-G 13679625-GAT-G ***
13557556-AC-GT 11401880-AC-GT ***
14609822-ATAT-A ***
13489029-TGCGC-CGCGT 11333353-TGCGC-CGCGT ***
28642809-GACAC-G 26496662-GACAC-G 22×AC***
22480586-TTGAATTC-T 20318700-TTGAATTC-T DYZ19 ***
58916653-C-T 56674218-G-A ***
58910201-T-A 56680670-A-T ***
58905820-T-A 56685051-A-T FGC81074 ***
58868299-T-A 56722572-A-T ***
58879543-T-G 56711328-A-C ***
58877145-G-C 56713726-C-G ***
58877111-A-T 56713760-T-A ***
58877089-C-G 56713782-G-C ***
58876172-T-A 56714699-A-T ***
58875426-A-G 56715445-T-C ***
58870635-G-T 56720236-C-A ***
58870110-C-A 56720761-G-T ***
14056518-C-A 11935812-C-A ***
13701249-G-T 11545573-G-T ***
13529010-C-A 11373334-C-A ***
13110501-A-T 10599987-A-T ***
58835606-G-A 56755265-C-T ***
22342731-G-C 20180845-G-C DYZ19 ***
13372190-C-T 11216514-C-T ***
22496169-T-C 20334283-T-C DYZ19 ***
13500110-CAAAAAA-C 11344434-CAAAAAA-C 16×A***
22481754-G-T 20319868-G-T DYZ19 ***
27808469-C-T 25662322-C-T P1_Y2 ***
58910244-T-A 56680627-A-T ***
13193952-N-NTCT ***
58867456-G-C 56723415-C-G ***
58851970-A-G 56738901-T-C ***
25954142-T-C 23807995-T-C P1_Y1 ***
22341180-GC-CT 20179294-GC-CT DYZ19 ***
13503636-TATGTAT-CATGCA 11347960-TATGTAT-CATGCA ***
22341725-CT-TC 20179839-CT-TC DYZ19 ***
58835639-T-C 56755232-A-G ***
22488535-GAAGCTACC-TAAGTTGCA 20326649-GAAGCTACC-TAAGTTGCA DYZ19 ***
22360415-T-C 20198529-T-C DYZ19 ***
20025484-C-T 17913604-C-T P5_Prx ***
22503330-A-G 20341444-A-G DYZ19 ***
13473535-G-A 11317859-G-A ***
9939336-A-G 10101727-A-G ***
22421538-G-A 20259652-G-A DYZ19 ***
22421536-C-T 20259650-C-T DYZ19 ***
22341728-T-G 20179842-T-G DYZ19 ***
22364887-G-T 20203001-G-T DYZ19 ***
22341175-C-A 20179289-C-A DYZ19 ***
22421522-T-C 20259636-T-C DYZ19 ***
22360431-G-A 20198545-G-A DYZ19 ***
13140064-G-C 10629550-G-C ***
13473535-G-C 11317859-G-C ***
22367118-GA-AG 20205232-GA-AG DYZ19 ***
22367107-C-A 20205221-C-A DYZ19 ***
22360499-G-C 20198613-G-C DYZ19 ***
58916658-G-A 56674213-C-T ***
22292969-T-A 20131083-T-A DYZ19 ***
58841385-T-C 56749486-A-G ***
13193951-N-NTC ***
22421679-C-G 20259793-C-G DYZ19 ***
22257084-T-C 20095198-T-C DYZ19 ***
22251591-A-T 20089705-A-T DYZ19 ***
22358798-TTTCG-GTTCC 20196912-TTTCG-GTTCC DYZ19 ***
22341228-ATCAG-TTCAT 20179342-ATCAG-TTCAT DYZ19 ***
8739154-AAAT-A 8871113-AAAT-A 13×AAT***
58910578-G-A 56680293-C-T ***
27499478-C-T 25353331-C-T P1_Y2 ***
22481631-A-G 20319745-A-G DYZ19 ***
22257224-T-A 20095338-T-A DYZ19 ***
16050996-CTCTTTCTTTCTT-C 13939116-CTCTTTCTTTCTT-C 16×TCTT***
22450048-G-T 20288162-G-T DYZ19 ***
13479380-G-A 11323704-G-A ***
13467743-C-G 11312067-C-G ***
22421531-T-C 20259645-T-C DYZ19 ***
27499459-A-G 25353312-A-G P1_Y2 ***
27499491-C-T 25353344-C-T P1_Y2 ***
22292071-C-T 20130185-C-T DYZ19 ***
22236723-G-T 20074837-G-T Z3461 DYZ19 ***
22257284-C-T 20095398-C-T FT63661 DYZ19 ***
22292968-A-G 20131082-A-G DYZ19 ***
22421957-G-T 20260071-G-T DYZ19 ***
58844027-T-TTCCATTCGATTCCA 56746842-A-AATGGAATCGAATGG ***
26152094-TCTC-CCTT 24005947-TCTC-CCTT P1_Y1 ***
26060208-GACT-AAAA 23914061-GACT-AAAA P1_Y1 ***
13140097-CAG-C 10629583-CAG-C ***
13481949-T-G 11326273-T-G ***
58836512-C-T 56754359-G-A ***
22248409-G-GA 20086523-G-GA DYZ19 ***
22248406-TC-T 20086520-TC-T DYZ19 ***
58874474-C-A 56716397-G-T ***
27997660-G-A 25851513-G-A P1_Y2 ***
22360373-T-G 20198487-T-G DYZ19 ***
13708403-AAC-GAG 11552727-AAC-GAG ***
58844750-C-G 56746121-G-C ***
58829066-T-G 56761805-A-C ***
58846333-C-T 56744538-G-A ***
13484692-C-G 11329016-C-G ***
58844938-T-C 56745933-A-G ***
58911286-G-C 56679585-C-G ***
58870474-T-C 56720397-A-G ***
58867155-A-C 56723716-T-G ***
27636864-A-G 25490717-A-G P1_Y2 ***
27636848-C-T 25490701-C-T P1_Y2 ***
16321779-C-CAA 14209899-C-CAA 38×A***
5757308-CAAAAAA-C 5889267-CAAAAAA-C 18×A***
13370417-G-C 11214741-G-C ***
28022805-G-A 25876658-G-A P1_Y2 ***
28022790-G-T 25876643-G-T P1_Y2 ***
28022789-A-T 25876642-A-T P1_Y2 ***
58907501-ATTCCGTTCGATTCCC-A 56683335-TGGAAGGGAATCGAAC-T ***
26386480-C-CAAAAAAAAAAAAAA 24240333-C-CAAAAAAAAAAAAAA P1_Y1 20×A***
58877130-G-C 56713741-C-G ***
5106939-T-G 5238898-T-G ***
13494460-A-C 11338784-A-C ***
58916694-G-T 56674177-C-A ***
22361364-A-T 20199478-A-T DYZ19 ***
13110062-A-G 10599548-A-G ***
13479204-C-A 11323528-C-A ***
13463998-A-G 11308322-A-G ***
13463995-G-A 11308319-G-A ***
13463500-C-T 11307824-C-T ***
13463491-C-G 11307815-C-G ***
13222816-G-A 11067140-G-A ***
13109782-G-A 10599268-G-A ***
25855066-T-C 23708919-T-C P1_Y1 ***
9780678-A-G 9943069-A-G ***
9309613-G-T 9472004-G-T ***
9191035-T-A 9353426-T-A ***
9191024-T-A 9353415-T-A 10×A***
2932203-T-A 3064162-T-A ***
2932202-T-A 3064161-T-A ***
13370465-C-A 11214789-C-A ***
22236485-A-T 20074599-A-T DYZ19 ***
3550567-AAC-A 3682526-AAC-A ***
58889797-G-A 56701074-C-T ***
22292975-T-A 20131089-T-A DYZ19 ***
58913269-A-G 56677602-T-C ***
22292646-T-C 20130760-T-C DYZ19 ***
13110584-C-A 10600070-C-A ***
13110570-C-A 10600056-C-A ***
22358325-G-A 20196439-G-A DYZ19 ***
22342904-C-G 20181018-C-G DYZ19 ***
22226668-T-C 20064782-T-C DYZ19 ***
22488170-G-A,T 20326284-G-A,T DYZ19 ***
20025480-T-C 17913600-T-C P5_Prx ***
18352135-GA-G 16240255-GA-G P6_Prx 8×A***
13728174-CGG-TGA 11572498-CGG-TGA ***
23036678-CA-C 20874792-CA-C 21×A***
13473507-GATA-TATG 11317831-GATA-TATG ***
5986600-TTTTTTTT-GTTTTTG 6118559-TTTTTTTT-GTTTTTG ***
13517368-GACT-G 11361692-GACT-G ***
13740389-T-C 11584713-T-C ***
6294687-C-T 6426646-C-T IR3_Dst ***
13110175-T-A 10599661-T-A ***
23380570-CAAA-C 21218684-CAAA-C 13×A***
58909204-G-C 56681667-C-G ***
28587017-ATTTA-GTTTG 26440870-ATTTA-GTTTG ***
18928568-TAC-AAA 16816688-TAC-AAA ***
22502698-G-T 20340812-G-T DYZ19 ***
22502690-A-T 20340804-A-T DYZ19 ***
22231868-A-T 20069982-A-T DYZ19 ***
9939652-T-C 10102043-T-C ***
26030817-C-T 23884670-C-T P1_Y1 ***
9314577-C-T 9476968-C-T ***
25250431-A-G 23104284-A-G P2_r1 ***
22296683-G-A 20134797-G-A DYZ19 ***
19852581-G-C 17740701-G-C P5_Prx ***
10034295-G-C 10196686-G-C ***
10034293-T-C 10196684-T-C ***
10034288-T-G 10196679-T-G ***
10034287-C-A 10196678-C-A ***
58910230-T-TC 56680640-A-AG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
Zenker1325151011-141212121313291610-1011112514183015-15-17-17111019-231615181836-38121211915-1681011810111223-2316101212148122320131211131111121234159161226281912121212109121210111130121223131011211519132417121524122318101416101211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2468921034884674415427499620
Kit: ASVM9*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs42
Variant counts last updated 2019-08-26 23:02:05.

* BED data not available. Using default values.


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